Rh1DG172700

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
35582985 .. 35597278
14294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG172700.1

Sequence Viewer

Length: 855 bp
ATGAATATTTCTCGACTGTTGGAACTTTTCCTTGCATATGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGCAGGACTTCTTTATTATCTCTGTTGCTGTGGTATCCTATTTATTCCCCTTTGCAATACATTGCAGGAGAATATGTTGGTCTTACAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGAAGATTTATGCAAAGTTGATTCAAGTGAGTTCGCAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCAGCTCTAAAAGAGAAAAGTGCTTATTACCGGATGGATGTTATTGACAAGTGCTTTTCTAGAAGAACAGTGGAAGAAATTTTATCTGCCCTCGAGGAGGAGGTTGCAAAGAGGACAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGAGAAGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTTTGCGAGGAGAAGTCAGCAAGGATTTCAGAGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAGGAACCCAAAGTGGGAGCCTTCTAAATTGGAGCTCATCAATGATCATATGGTTGAGCAGTACTTCTTTAAGTTGGATGATGAAGAGTGGGAAGAGTTAAAGCTCCCTGCAAGATTCAACTTGCCCGTAACTGCCATTGCAAAGCTTTGA

Protein Analysis

284

Amino Acids

32.24

Weight (kDa)

5.75

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 3 - 50 1.6e-09 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 68 - 257 2.6e-57 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 1 cut(s) 767
AfiI CCNNNNNNNGG 3 cut(s) 291, 478, 718
AgsI TTSAA 6 cut(s) 308, 333, 353, 524, 556, 823
AluBI AGCT 6 cut(s) 356, 386, 686, 739, 808, 850
AluI AGCT 6 cut(s) 356, 386, 686, 739, 808, 850
Alw21I GWGCWC 1 cut(s) 741
AlwI GGATC 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 1 cut(s) 459
AseI ATTAAT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 631
AsuHPI GGTGA 3 cut(s) 76, 116, 534
AvaI CYCGRG 1 cut(s) 473
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 233, 409
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 748
BfaI CTAG 1 cut(s) 441
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 114, 377
BlsI GCNGC 2 cut(s) 115, 378
BmcAI AGTACT 1 cut(s) 767
BmeT110I CYCGRG 1 cut(s) 473
BmiI GGNNCC 3 cut(s) 229, 710, 723
BmsI GCATC 3 cut(s) 37, 388, 548
BpuEI CTTGAG 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 478, 718
Bse3DI GCAATG 2 cut(s) 198, 840
BseGI GGATG 6 cut(s) 52, 244, 379, 420, 424, 787
BseLI CCNNNNNNNGG 3 cut(s) 291, 478, 718
BseMI GCAATG 2 cut(s) 198, 840
BseRI GAGGAG 4 cut(s) 56, 491, 494, 663
BseXI GCAGC 1 cut(s) 388
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 741
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 291, 478, 718
BsoBI CYCGRG 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 3 cut(s) 364, 569, 748
BspACI CCGC 1 cut(s) 113
BspLI GGNNCC 3 cut(s) 229, 710, 723
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 2 cut(s) 198, 840
BssMI GATC 3 cut(s) 364, 569, 748
Bst4CI ACNGT 2 cut(s) 18, 451
Bst6I CTCTTC 3 cut(s) 79, 783, 792
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 255
BstENI CCTNNNNNAGG 2 cut(s) 289, 476
BstF5I GGATG 6 cut(s) 52, 244, 379, 420, 424, 787
BstKTI GATC 3 cut(s) 367, 572, 751
BstMBI GATC 3 cut(s) 364, 569, 748
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 388
BsuI GTATCC 1 cut(s) 183
BtsCI GGATG 6 cut(s) 52, 244, 379, 420, 424, 787
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 766
CviAII CATG 1 cut(s) 638
CviQI GTAC 1 cut(s) 766
DpnI GATC 3 cut(s) 366, 571, 750
DpnII GATC 3 cut(s) 364, 569, 748
Eam1104I CTCTTC 3 cut(s) 79, 783, 792
EarI CTCTTC 3 cut(s) 79, 783, 792
Ecl136II GAGCTC 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 741
Eco53kI GAGCTC 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 739
EcoNI CCTNNNNNAGG 2 cut(s) 289, 476
EcoT38I GRGCYC 1 cut(s) 741
FaeI CATG 1 cut(s) 641
FaiI YATR 9 cut(s) 37, 39, 213, 319, 624, 639, 689, 753, 755
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FatI CATG 1 cut(s) 637
FauNDI CATATG 2 cut(s) 37, 753
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 2 cut(s) 114, 377
FokI GGATG 6 cut(s) 59, 251, 366, 427, 431, 794
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 2 cut(s) 114, 377
FspBI CTAG 1 cut(s) 441
GluI GCNGC 2 cut(s) 114, 377
HapII CCGG 1 cut(s) 412
Hin1II CATG 1 cut(s) 641
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 3 cut(s) 67, 329, 819
HpaII CCGG 1 cut(s) 412
HphI GGTGA 3 cut(s) 76, 116, 534
Hpy188I TCNGA 1 cut(s) 671
Hpy188III TCNNGA 5 cut(s) 12, 125, 305, 441, 617
HpyAV CCTTC 4 cut(s) 131, 575, 579, 735
HpyCH4III ACNGT 2 cut(s) 18, 451
HpyCH4V TGCA 9 cut(s) 35, 193, 203, 269, 321, 488, 681, 815, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 641
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 3 cut(s) 364, 569, 748
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 3 cut(s) 721, 736, 813
LpnPI CCDG 9 cut(s) 84, 127, 189, 210, 244, 396, 425, 578, 825
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 3 cut(s) 37, 388, 548
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 832
MalI GATC 3 cut(s) 366, 571, 750
MboI GATC 3 cut(s) 364, 569, 748
MboII GAAGA 8 cut(s) 96, 320, 323, 456, 467, 568, 800, 809
MhlI GDGCHC 1 cut(s) 741
MluCI AATT 5 cut(s) 348, 459, 519, 573, 731
MmeI TCCRAC 2 cut(s) 675, 759
MroXI GAANNNNTTC 1 cut(s) 631
MseI TTAA 3 cut(s) 132, 774, 803
MspI CCGG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeI CATATG 2 cut(s) 37, 753
NdeII GATC 3 cut(s) 364, 569, 748
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 3 cut(s) 229, 710, 723
PaeR7I CTCGAG 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 631
PfeI GAWTC 3 cut(s) 67, 329, 819
PkrI GCNGC 2 cut(s) 115, 378
PshBI ATTAAT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 741
PspN4I GGNNCC 3 cut(s) 229, 710, 723
PspXI VCTCGAGB 1 cut(s) 473
RsaI GTAC 1 cut(s) 767
RsaNI GTAC 1 cut(s) 766
SacI GAGCTC 1 cut(s) 741
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 3 cut(s) 132, 774, 803
SatI GCNGC 2 cut(s) 114, 377
Sau3AI GATC 3 cut(s) 364, 569, 748
ScaI AGTACT 1 cut(s) 767
SduI GDGCHC 1 cut(s) 741
SetI ASST 8 cut(s) 229, 358, 388, 486, 688, 741, 810, 852
SfaNI GCATC 3 cut(s) 37, 388, 548
Sfr274I CTCGAG 1 cut(s) 473
SlaI CTCGAG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 71, 473
SmoI CTYRAG 2 cut(s) 71, 473
Sse9I AATT 5 cut(s) 348, 459, 519, 573, 731
SsiI CCGC 1 cut(s) 113
SspI AATATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 741
TaaI ACNGT 2 cut(s) 18, 451
TaqI TCGA 3 cut(s) 13, 474, 512
TasI AATT 5 cut(s) 348, 459, 519, 573, 731
TatI WGTACW 1 cut(s) 765
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 67, 329, 819
Tru1I TTAA 3 cut(s) 132, 774, 803
Tru9I TTAA 3 cut(s) 132, 774, 803
TscAI CASTG 1 cut(s) 456
TseI GCWGC 1 cut(s) 376
TspDTI ATGAA 3 cut(s) 17, 150, 801
TspRI CASTG 1 cut(s) 456
VspI ATTAAT 1 cut(s) 132
XagI CCTNNNNNAGG 2 cut(s) 289, 476
XapI RAATTY 1 cut(s) 459
XbaI TCTAGA 1 cut(s) 440
XhoI CTCGAG 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 631
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.