Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

34556752 .. 34564899

Gene Structure 8148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTTCTCTCAACTCAACCCGACGCGACGACGACGACGATTCGGTGGTTTTGGTACAAGAGGATTTCTTTGCGAGGACGTTGACATTGAACAGGCCTCGGCAACTGAATGCCCTTAACTTTGAAATGATTTCTCGACTGTTGGAACTTTTCCTTGCATATGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGAGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGCAGGACTTCTTTATTATCTCTGGTTTCAATTCTGAATGGAATTGTCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGATTCCGTGTTGCAACTGAGAATTCGGTTTTCGCAATGCCAGAAACAGCTCTGGGACTTTTTCCAGATGTAGGTGCCTCTTATTATTTGTCCAGGCTTCCTGGATTCTTTGGAGAATATGTTGGTCTTGCAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGCAGATCTATGCAAAGTTGATTCAAGTGAGTTTGCAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCACCTCTAAAAGAGAAAAGTGCTTATTACCGTGTTTTCTACTTGGTCATAGATAAAATGTTGACAATCTGCTTTGACGATGCCTTGCTTGCTATTAAGGAGGAGGAGGCTGCAAAGAGGGCAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGAGAAGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTTTGCGAGGAGAAGTCAGCAAGGATTTCAGAGAGTGGGAGCCTTCTAAATTGGAGCTCATCAATGATCATATGGTTGAGCAGTACTTCTCTAAGTTGGATGATGAAGAATGGGAAGAGTTAAAGCTCCCTGCAAGATTCAAGTTGCCCGTAACTGCCATTGCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

355

Amino Acids

39.55

Weight (kDa)

5.47

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	26 - 327	3.8e-87	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	28 - 189	4.2e-23	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	416, 476
AccII	CGCG	1 cut(s)	27
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	2 cut(s)	57, 980
AfiI	CCNNNNNNNGG	2 cut(s)	413, 540
AgsI	TTSAA	9 cut(s)	91, 125, 291, 557, 582, 602, 779, 811, 1036
AjnI	CCWGG	2 cut(s)	434, 442
AluBI	AGCT	5 cut(s)	392, 605, 952, 1021, 1063
AluI	AGCT	5 cut(s)	392, 605, 952, 1021, 1063
Alw21I	GWGCWC	1 cut(s)	954
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	625, 740
ApoI	RAATTY	1 cut(s)	364
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	886
AsuHPI	GGTGA	3 cut(s)	199, 239, 789
BanI	GGYRCC	2 cut(s)	416, 476
BanII	GRGCYC	1 cut(s)	954
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	2 cut(s)	637, 727
BccI	CCATC	2 cut(s)	341, 482
BciT130I	CCWGG	2 cut(s)	436, 444
BclI	TGATCA	1 cut(s)	961
BfuAI	ACCTGC	1 cut(s)	464
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	3 cut(s)	237, 626, 741
BlsI	GCNGC	3 cut(s)	238, 627, 742
BmcAI	AGTACT	1 cut(s)	980
Bme1390I	CCNGG	2 cut(s)	436, 444
BmiI	GGNNCC	3 cut(s)	418, 478, 936
BmrFI	CCNGG	2 cut(s)	436, 444
BmsI	GCATC	4 cut(s)	160, 637, 700, 803
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	98, 337
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 447, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 540
Bse3DI	GCAATG	2 cut(s)	384, 1053
BseBI	CCWGG	2 cut(s)	436, 444
BseDI	CCNNGG	2 cut(s)	98, 337
BseGI	GGATG	5 cut(s)	175, 333, 493, 628, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	413, 540
BseMI	GCAATG	2 cut(s)	384, 1053
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	4 cut(s)	179, 746, 749, 918
BseXI	GCAGC	2 cut(s)	637, 727
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	2 cut(s)	416, 476
BsiHKAI	GWGCWC	1 cut(s)	954
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	413, 540
BsmFI	GGGAC	1 cut(s)	411
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp143I	GATC	4 cut(s)	562, 613, 824, 961
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	418, 478, 936
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	621
BspQI	GCTCTTC	1 cut(s)	202
BspT107I	GGYRCC	2 cut(s)	416, 476
BsrDI	GCAATG	2 cut(s)	384, 1053
BssECI	CCNNGG	2 cut(s)	98, 337
BssMI	GATC	4 cut(s)	562, 613, 824, 961
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	2 cut(s)	436, 444
Bst4CI	ACNGT	2 cut(s)	141, 662
Bst6I	CTCTTC	2 cut(s)	202, 1005
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	504, 720
BstDEI	CTNAG	2 cut(s)	360, 987
BstDSI	CCRYGG	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	538
BstF5I	GGATG	5 cut(s)	175, 333, 493, 628, 1000
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	565, 616, 827, 964
BstMBI	GATC	4 cut(s)	562, 613, 824, 961
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 719, 749
BstNI	CCWGG	2 cut(s)	436, 444
BstSCI	CCNGG	2 cut(s)	434, 442
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	637, 727
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	5 cut(s)	175, 333, 493, 628, 1000
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	504, 720
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	56, 979
CviAII	CATG	3 cut(s)	310, 338, 893
CviQI	GTAC	2 cut(s)	56, 979
DdeI	CTNAG	2 cut(s)	360, 987
DpnI	GATC	4 cut(s)	564, 615, 826, 963
DpnII	GATC	4 cut(s)	562, 613, 824, 961
Eam1104I	CTCTTC	2 cut(s)	202, 1005
EarI	CTCTTC	2 cut(s)	202, 1005
Ecl136II	GAGCTC	1 cut(s)	952
Eco130I	CCWWGG	1 cut(s)	337
Eco147I	AGGCCT	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	954
Eco53kI	GAGCTC	1 cut(s)	952
Eco57I	CTGAAG	1 cut(s)	830
EcoICRI	GAGCTC	1 cut(s)	952
EcoNI	CCTNNNNNAGG	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	434, 442
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	3 cut(s)	313, 341, 896
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	3 cut(s)	309, 337, 892
FauNDI	CATATG	2 cut(s)	160, 966
FbaI	TGATCA	1 cut(s)	961
Fnu4HI	GCNGC	3 cut(s)	237, 626, 741
FokI	GGATG	5 cut(s)	182, 320, 500, 615, 1007
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	3 cut(s)	237, 626, 741
GluI	GCNGC	3 cut(s)	237, 626, 741
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	313, 341, 896
HincII	GTYRAC	2 cut(s)	84, 693
HindII	GTYRAC	2 cut(s)	84, 693
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	6 cut(s)	41, 190, 345, 447, 578, 1032
HphI	GGTGA	3 cut(s)	199, 239, 789
Hpy166II	GTNNAC	2 cut(s)	84, 693
Hpy188I	TCNGA	2 cut(s)	297, 926
Hpy188III	TCNNGA	5 cut(s)	135, 248, 407, 554, 872
Hpy8I	GTNNAC	2 cut(s)	84, 693
Hpy99I	CGWCG	5 cut(s)	27, 32, 35, 38, 41
HpyAV	CCTTC	4 cut(s)	254, 830, 834, 948
HpyCH4III	ACNGT	2 cut(s)	141, 662
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	9 cut(s)	158, 356, 473, 518, 570, 593, 743, 1028, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 719, 749
HpyF3I	CTNAG	2 cut(s)	360, 987
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	313, 341, 896
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	4 cut(s)	562, 613, 824, 961
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	3 cut(s)	934, 949, 1026
Lsp1109I	GCAGC	2 cut(s)	637, 727
LweI	GCATC	4 cut(s)	160, 637, 700, 803
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	1045
MalI	GATC	4 cut(s)	564, 615, 826, 963
MboI	GATC	4 cut(s)	562, 613, 824, 961
MboII	GAAGA	4 cut(s)	219, 823, 1013, 1022
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	7 cut(s)	291, 303, 364, 597, 774, 828, 944
MmeI	TCCRAC	2 cut(s)	123, 972
MroXI	GAANNNNTTC	1 cut(s)	886
MseI	TTAA	4 cut(s)	117, 255, 726, 1016
MspR9I	CCNGG	2 cut(s)	436, 444
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	2 cut(s)	436, 444
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	218, 719, 749
NcoI	CCATGG	1 cut(s)	337
NdeI	CATATG	2 cut(s)	160, 966
NdeII	GATC	4 cut(s)	562, 613, 824, 961
NlaIII	CATG	3 cut(s)	313, 341, 896
NlaIV	GGNNCC	3 cut(s)	418, 478, 936
NmeAIII	GCCGAG	1 cut(s)	79
PaqCI	CACCTGC	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	886
PfeI	GAWTC	6 cut(s)	41, 190, 345, 447, 578, 1032
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	238, 627, 742
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	954
Psp6I	CCWGG	2 cut(s)	434, 442
PspGI	CCWGG	2 cut(s)	434, 442
PspN4I	GGNNCC	3 cut(s)	418, 478, 936
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	2 cut(s)	57, 980
RsaNI	GTAC	2 cut(s)	56, 979
SacI	GAGCTC	1 cut(s)	954
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	117, 255, 726, 1016
SatI	GCNGC	3 cut(s)	237, 626, 741
Sau3AI	GATC	4 cut(s)	562, 613, 824, 961
ScaI	AGTACT	1 cut(s)	980
ScrFI	CCNGG	2 cut(s)	436, 444
SduI	GDGCHC	1 cut(s)	954
SfaNI	GCATC	4 cut(s)	160, 637, 700, 803
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	7 cut(s)	291, 303, 364, 597, 774, 828, 944
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	954
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	434, 442
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	141, 662
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	136, 767
TasI	AATT	7 cut(s)	291, 303, 364, 597, 774, 828, 944
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	6 cut(s)	41, 190, 345, 447, 578, 1032
Tru1I	TTAA	4 cut(s)	117, 255, 726, 1016
Tru9I	TTAA	4 cut(s)	117, 255, 726, 1016
TseI	GCWGC	2 cut(s)	625, 740
TspDTI	ATGAA	2 cut(s)	273, 1014
TspGWI	ACGGA	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	538
XapI	RAATTY	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	886
ZrmI	AGTACT	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.