Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004092.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

215546 .. 223229

Gene Structure 7684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004092.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atggcttctctcaactcaacccgacgcgacgacgacgatgattcggtggttttggtacgagaggatttctttgcgaggacgttgacattgaacaggcctcggcaactgaatgcccttaactttgaaatggggaaaggaagagcattttgtgctggtggtgatgtagcggctgtggttcgtgatattaatgaaggaaattggagattaggtgcaattttttttcgaaaggagtttaccttaaactacttaatggcaacatacagtaaaccacaggtttcaattctgaatggaattgtcatgggaggtggggctggtgcttccatccatggtagattccgtgttgcaactgagaattcggttttcgcaatgccagaaacagctctgggactttttccagatgtaggtgcctcttattatttgtccaggcttcctggattctttggagaatatgttggtcttacaggtgccagattggatggtgctgaaatgcttgcttgtggtcttgcaactcactttgttccctcaacgaggctgtcctctcttgaagcagatctatgcaaagttgattcaagtgagttcgcaacaattcaagctattttggatcaatacttgcagcatccagctctaaaagagaaaagtgcttattaccggatggatgttattgacaagtgcttttctagaagaacagtggaagaaattttatctgccctcgaggaggaggctgcaaagagggcaaatgattggttatcgacaacaattcaatctctaaaaaaggcatcaccaatgagtttgaagatttctttgagatcaattagagaaggaaggcttcagggagttggtcaatgccttgttcgtgaatatagaatggtttctcatgttttgcgaggagaagtcagcaaggatttcagagagggttgcagagctatattgttggacaaggataggaacccaaagtgggagccttctaaattggagctcatcaatgatcatatggttgagcagtacttctctaagttggatgatgaagaatgggaagagttaaagctccctgcaagattcaacttgcccgtaactgccattgcaaagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

363

Amino Acids

40.69

Weight (kDa)

6.28

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	710
AccB1I	GGYRCC	2 cut(s)	404, 464
AccII	CGCG	1 cut(s)	27
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	2 cut(s)	352, 696
AcuI	CTGAAG	1 cut(s)	812
AfaI	GTAC	2 cut(s)	57, 1004
AfiI	CCNNNNNNNGG	4 cut(s)	401, 528, 715, 955
AgsI	TTSAA	9 cut(s)	91, 125, 279, 545, 570, 590, 761, 793, 1060
AjnI	CCWGG	2 cut(s)	422, 430
AluBI	AGCT	7 cut(s)	380, 593, 623, 923, 976, 1045, 1087
AluI	AGCT	7 cut(s)	380, 593, 623, 923, 976, 1045, 1087
Alw21I	GWGCWC	1 cut(s)	978
AlwI	GGATC	1 cut(s)	609
Ama87I	CYCGRG	1 cut(s)	710
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	613, 722
ApoI	RAATTY	2 cut(s)	352, 696
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	868
AsuHPI	GGTGA	2 cut(s)	170, 771
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	710
BanI	GGYRCC	2 cut(s)	404, 464
BanII	GRGCYC	1 cut(s)	978
Bbv12I	GWGCWC	1 cut(s)	978
BbvI	GCAGC	2 cut(s)	625, 709
BccI	CCATC	3 cut(s)	329, 470, 646
BciT130I	CCWGG	2 cut(s)	424, 432
BclI	TGATCA	1 cut(s)	985
BfaI	CTAG	1 cut(s)	678
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	3 cut(s)	168, 614, 723
BlsI	GCNGC	3 cut(s)	169, 615, 724
BmcAI	AGTACT	1 cut(s)	1004
Bme1390I	CCNGG	2 cut(s)	424, 432
BmeT110I	CYCGRG	1 cut(s)	710
BmiI	GGNNCC	4 cut(s)	406, 466, 947, 960
BmrFI	CCNGG	2 cut(s)	424, 432
BmsI	GCATC	2 cut(s)	625, 785
Bpu14I	TTCGAA	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	98, 325
BsaWI	WCCGGW	1 cut(s)	648
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 435, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	401, 528, 715, 955
Bse3DI	GCAATG	2 cut(s)	372, 1077
BseBI	CCWGG	2 cut(s)	424, 432
BseDI	CCNNGG	2 cut(s)	98, 325
BseGI	GGATG	6 cut(s)	321, 481, 616, 657, 661, 1024
BseLI	CCNNNNNNNGG	4 cut(s)	401, 528, 715, 955
BseMI	GCAATG	2 cut(s)	372, 1077
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	3 cut(s)	728, 731, 900
BseXI	GCAGC	2 cut(s)	625, 709
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	2 cut(s)	404, 464
BsiHKAI	GWGCWC	1 cut(s)	978
BsiHKCI	CYCGRG	1 cut(s)	710
BsiSI	CCGG	1 cut(s)	649
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	4 cut(s)	401, 528, 715, 955
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	710
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	978
Bsp143I	GATC	4 cut(s)	550, 601, 806, 985
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	406, 466, 947, 960
BspPI	GGATC	1 cut(s)	609
BspQI	GCTCTTC	1 cut(s)	133
BspT104I	TTCGAA	1 cut(s)	223
BspT107I	GGYRCC	2 cut(s)	404, 464
BsrDI	GCAATG	2 cut(s)	372, 1077
BssECI	CCNNGG	2 cut(s)	98, 325
BssMI	GATC	4 cut(s)	550, 601, 806, 985
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	424, 432
Bst4CI	ACNGT	2 cut(s)	263, 688
Bst6I	CTCTTC	2 cut(s)	133, 1029
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	348, 1011
BstDSI	CCRYGG	1 cut(s)	325
BstENI	CCTNNNNNAGG	2 cut(s)	526, 713
BstF5I	GGATG	6 cut(s)	321, 481, 616, 657, 661, 1024
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	553, 604, 809, 988
BstMBI	GATC	4 cut(s)	550, 601, 806, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 731
BstNI	CCWGG	2 cut(s)	424, 432
BstSCI	CCNGG	2 cut(s)	422, 430
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	625, 709
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	6 cut(s)	321, 481, 616, 657, 661, 1024
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	492
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	56, 1003
CviAII	CATG	3 cut(s)	298, 326, 875
CviQI	GTAC	2 cut(s)	56, 1003
DdeI	CTNAG	2 cut(s)	348, 1011
DpnI	GATC	4 cut(s)	552, 603, 808, 987
DpnII	GATC	4 cut(s)	550, 601, 806, 985
Eam1104I	CTCTTC	2 cut(s)	133, 1029
EarI	CTCTTC	2 cut(s)	133, 1029
Ecl136II	GAGCTC	1 cut(s)	976
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	978
Eco53kI	GAGCTC	1 cut(s)	976
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	976
EcoNI	CCTNNNNNAGG	2 cut(s)	526, 713
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	422, 430
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	978
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	301, 329, 878
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	3 cut(s)	297, 325, 874
FauNDI	CATATG	1 cut(s)	990
FbaI	TGATCA	1 cut(s)	985
Fnu4HI	GCNGC	3 cut(s)	168, 614, 723
FokI	GGATG	6 cut(s)	308, 488, 603, 664, 668, 1031
FriOI	GRGCYC	1 cut(s)	978
Fsp4HI	GCNGC	3 cut(s)	168, 614, 723
FspBI	CTAG	1 cut(s)	678
GluI	GCNGC	3 cut(s)	168, 614, 723
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	649
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	301, 329, 878
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	1085
HinfI	GANTC	5 cut(s)	41, 333, 435, 566, 1056
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	2 cut(s)	170, 771
Hpy166II	GTNNAC	3 cut(s)	84, 234, 266
Hpy188I	TCNGA	2 cut(s)	285, 908
Hpy188III	TCNNGA	5 cut(s)	179, 395, 542, 678, 854
Hpy8I	GTNNAC	3 cut(s)	84, 234, 266
Hpy99I	CGWCG	4 cut(s)	27, 32, 35, 38
HpyAV	CCTTC	4 cut(s)	185, 812, 816, 972
HpyCH4III	ACNGT	2 cut(s)	263, 688
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	9 cut(s)	212, 344, 506, 558, 613, 725, 918, 1052, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 731
HpyF3I	CTNAG	2 cut(s)	348, 1011
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	301, 329, 878
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	4 cut(s)	550, 601, 806, 985
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	3 cut(s)	958, 973, 1050
Lsp1109I	GCAGC	2 cut(s)	625, 709
LweI	GCATC	2 cut(s)	625, 785
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	1069
MalI	GATC	4 cut(s)	552, 603, 808, 987
MboI	GATC	4 cut(s)	550, 601, 806, 985
MboII	GAAGA	6 cut(s)	150, 693, 704, 805, 1037, 1046
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	1 cut(s)	978
MmeI	TCCRAC	2 cut(s)	912, 996
MroXI	GAANNNNTTC	1 cut(s)	868
MseI	TTAA	5 cut(s)	117, 186, 239, 248, 1040
MspI	CCGG	1 cut(s)	649
MspR9I	CCNGG	2 cut(s)	424, 432
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	2 cut(s)	424, 432
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	149, 731
NcoI	CCATGG	1 cut(s)	325
NdeI	CATATG	1 cut(s)	990
NdeII	GATC	4 cut(s)	550, 601, 806, 985
NlaIII	CATG	3 cut(s)	301, 329, 878
NlaIV	GGNNCC	4 cut(s)	406, 466, 947, 960
NmeAIII	GCCGAG	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	710
PceI	AGGCCT	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	5 cut(s)	41, 333, 435, 566, 1056
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	169, 615, 724
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	978
Psp6I	CCWGG	2 cut(s)	422, 430
PspGI	CCWGG	2 cut(s)	422, 430
PspN4I	GGNNCC	4 cut(s)	406, 466, 947, 960
PspXI	VCTCGAGB	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	2 cut(s)	57, 1004
RsaNI	GTAC	2 cut(s)	56, 1003
SacI	GAGCTC	1 cut(s)	978
SapI	GCTCTTC	1 cut(s)	133
SaqAI	TTAA	5 cut(s)	117, 186, 239, 248, 1040
SatI	GCNGC	3 cut(s)	168, 614, 723
Sau3AI	GATC	4 cut(s)	550, 601, 806, 985
ScaI	AGTACT	1 cut(s)	1004
ScrFI	CCNGG	2 cut(s)	424, 432
SduI	GDGCHC	1 cut(s)	978
SfaNI	GCATC	2 cut(s)	625, 785
Sfr274I	CTCGAG	1 cut(s)	710
SfuI	TTCGAA	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	978
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	422, 430
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	263, 688
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	223, 711, 749
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	5 cut(s)	41, 333, 435, 566, 1056
Tru1I	TTAA	5 cut(s)	117, 186, 239, 248, 1040
Tru9I	TTAA	5 cut(s)	117, 186, 239, 248, 1040
TscAI	CASTG	1 cut(s)	693
TseI	GCWGC	2 cut(s)	613, 722
TspDTI	ATGAA	2 cut(s)	204, 1038
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	693
VspI	ATTAAT	1 cut(s)	186
XagI	CCTNNNNNAGG	2 cut(s)	526, 713
XapI	RAATTY	2 cut(s)	352, 696
XbaI	TCTAGA	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	1 cut(s)	678
ZrmI	AGTACT	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.