Rh1AG172400

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
33095262 .. 33104659
9398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG172400.1

Sequence Viewer

Length: 1053 bp
ATGGCTTCTCTCAACTCAACCCGACGCGACGACGACGATTCGGTTGTTTTGGTACGAGAGGATTTCTTTGCGAGGACGTTGACATTGAACAGGCCTCGGCAACTGAATGCCCTTAACTTTGAAATGATTTCTCGACTGTTGGAACTTTTCCTTGCATATGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGAAATTGGAGATTAGGTGCAATTTTTTTCCGAAAGGAGTTTACCTTAAACTACTTAATGGCAACATACAGTAAACCACAGGTTTCAATTCTGAATGGAATTGTCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGATTCCGTGTTGCAACTGAGAATTCGGTTTTTGCAATGCCAGAAACAGCTCTGGGACTTTTTCCAGATGTAGGTGCCTCTTATTATTTGTCCCGGCTTCCTGGATTCTTTGGAGAATATGTTGGTCTTACAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGCAGATCTATGCAAAGTTGATTCAAGTGAGTTTGCAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCAGCTCTAAAAGAGAAAAGTGCTTATTACCGGATGGATGTTATTGACAAGTGCTTTTCTAGAAGAACAGTGGAAGAAATTTTATCTGCCCTCGAGGAGGAGGCTGCAAAGAGGGCAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGAGACGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTTTGCGAGGAGAAGTCAGCAAGGATTTCAGAGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAGGAACCCAAAGGTAGGAATGACTTACCCACATGCAATCCCTTAA

Protein Analysis

350

Amino Acids

38.9

Weight (kDa)

8.45

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 25 - 340 5.3e-122 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 27 - 256 2.7e-29 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 776
AccB1I GGYRCC 2 cut(s) 470, 530
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 675
AcsI RAATTY 2 cut(s) 418, 762
AcuI CTGAAG 1 cut(s) 878
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1022
AgsI TTSAA 8 cut(s) 88, 122, 345, 611, 636, 656, 827, 859
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 4 cut(s) 446, 659, 689, 989
AluI AGCT 4 cut(s) 446, 659, 689, 989
Alw26I GTCTC 1 cut(s) 876
AlwI GGATC 1 cut(s) 675
Ama87I CYCGRG 1 cut(s) 776
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 679, 788
ApoI RAATTY 2 cut(s) 418, 762
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 934
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 3 cut(s) 196, 236, 837
AvaI CYCGRG 1 cut(s) 776
BanI GGYRCC 2 cut(s) 470, 530
BbvI GCAGC 2 cut(s) 691, 775
BccI CCATC 3 cut(s) 395, 536, 712
BciT130I CCWGG 1 cut(s) 498
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 876
BfaI CTAG 1 cut(s) 744
BglII AGATCT 1 cut(s) 616
BisI GCNGC 3 cut(s) 234, 680, 789
BlsI GCNGC 3 cut(s) 235, 681, 790
Bme1390I CCNGG 2 cut(s) 490, 498
BmeT110I CYCGRG 1 cut(s) 776
BmiI GGNNCC 3 cut(s) 472, 532, 1013
BmrFI CCNGG 2 cut(s) 490, 498
BmsI GCATC 3 cut(s) 157, 691, 851
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 490
BsaJI CCNNGG 2 cut(s) 95, 391
BsaWI WCCGGW 1 cut(s) 714
BsaXI ACNNNNNCTCC 4 cut(s) 259, 289, 501, 531
Bsc4I CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1022
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 95, 391
BseGI GGATG 6 cut(s) 172, 387, 547, 682, 723, 727
BseLI CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1022
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 405
BseRI GAGGAG 4 cut(s) 176, 794, 797, 966
BseXI GCAGC 2 cut(s) 691, 775
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 2 cut(s) 470, 530
BsiHKCI CYCGRG 1 cut(s) 776
BsiSI CCGG 2 cut(s) 490, 715
BslFI GGGAC 2 cut(s) 465, 472
BslI CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1022
BsmAI GTCTC 1 cut(s) 876
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 2 cut(s) 465, 472
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 776
Bsp143I GATC 3 cut(s) 616, 667, 872
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 472, 532, 1013
BspPI GGATC 1 cut(s) 675
BspQI GCTCTTC 1 cut(s) 199
BspT107I GGYRCC 2 cut(s) 470, 530
BsrDI GCAATG 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 95, 391
BssMI GATC 3 cut(s) 616, 667, 872
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 3 cut(s) 138, 329, 754
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 391
BstENI CCTNNNNNAGG 2 cut(s) 592, 779
BstF5I GGATG 6 cut(s) 172, 387, 547, 682, 723, 727
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 619, 670, 875
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 3 cut(s) 616, 667, 872
BstMWI GCNNNNNNNGC 2 cut(s) 215, 797
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 1043
BstSCI CCNGG 2 cut(s) 488, 496
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 691, 775
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 6 cut(s) 172, 387, 547, 682, 723, 727
BtsIMutI CAGTG 1 cut(s) 759
Cac8I GCNNGC 1 cut(s) 558
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 53
CviAII CATG 4 cut(s) 364, 392, 941, 1040
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 618, 669, 874
DpnII GATC 3 cut(s) 616, 667, 872
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 878
Eco88I CYCGRG 1 cut(s) 776
EcoNI CCTNNNNNAGG 2 cut(s) 592, 779
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 4 cut(s) 367, 395, 944, 1043
FaqI GGGAC 2 cut(s) 465, 472
FatI CATG 4 cut(s) 363, 391, 940, 1039
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 234, 680, 789
FokI GGATG 6 cut(s) 179, 374, 554, 669, 730, 734
Fsp4HI GCNGC 3 cut(s) 234, 680, 789
FspBI CTAG 1 cut(s) 744
GluI GCNGC 3 cut(s) 234, 680, 789
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 490, 715
HgaI GACGC 1 cut(s) 33
Hin1II CATG 4 cut(s) 367, 395, 944, 1043
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 5 cut(s) 38, 187, 399, 501, 632
HpaII CCGG 2 cut(s) 490, 715
HphI GGTGA 3 cut(s) 196, 236, 837
Hpy166II GTNNAC 3 cut(s) 81, 300, 332
Hpy188I TCNGA 3 cut(s) 290, 351, 974
Hpy188III TCNNGA 6 cut(s) 132, 245, 461, 608, 744, 920
Hpy8I GTNNAC 3 cut(s) 81, 300, 332
Hpy99I CGWCG 4 cut(s) 27, 32, 35, 38
HpyAV CCTTC 2 cut(s) 251, 882
HpyCH4III ACNGT 3 cut(s) 138, 329, 754
HpyCH4IV ACGT 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 797
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 4 cut(s) 367, 395, 944, 1043
Kzo9I GATC 3 cut(s) 616, 667, 872
LguI GCTCTTC 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 691, 775
LweI GCATC 3 cut(s) 157, 691, 851
MaeI CTAG 1 cut(s) 744
MaeII ACGT 1 cut(s) 77
MalI GATC 3 cut(s) 618, 669, 874
MboI GATC 3 cut(s) 616, 667, 872
MboII GAAGA 4 cut(s) 216, 759, 770, 871
MflI RGATCY 1 cut(s) 616
MluCI AATT 9 cut(s) 262, 279, 345, 357, 418, 651, 762, 822, 876
MmeI TCCRAC 2 cut(s) 120, 978
MroXI GAANNNNTTC 1 cut(s) 934
MseI TTAA 5 cut(s) 114, 252, 305, 314, 1051
MspI CCGG 2 cut(s) 490, 715
MspR9I CCNGG 2 cut(s) 490, 498
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 215, 797
NciI CCSGG 1 cut(s) 490
NcoI CCATGG 1 cut(s) 391
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 616, 667, 872
NlaIII CATG 4 cut(s) 367, 395, 944, 1043
NlaIV GGNNCC 3 cut(s) 472, 532, 1013
NmeAIII GCCGAG 1 cut(s) 76
NspI RCATGY 1 cut(s) 1043
PaeR7I CTCGAG 1 cut(s) 776
PceI AGGCCT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 199
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 934
PfeI GAWTC 5 cut(s) 38, 187, 399, 501, 632
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 3 cut(s) 235, 681, 790
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 3 cut(s) 472, 532, 1013
PspXI VCTCGAGB 1 cut(s) 776
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 5 cut(s) 114, 252, 305, 314, 1051
SatI GCNGC 3 cut(s) 234, 680, 789
Sau3AI GATC 3 cut(s) 616, 667, 872
ScrFI CCNGG 2 cut(s) 490, 498
SfaNI GCATC 3 cut(s) 157, 691, 851
Sfr274I CTCGAG 1 cut(s) 776
SlaI CTCGAG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 191, 776
SmoI CTYRAG 2 cut(s) 191, 776
Sse9I AATT 9 cut(s) 262, 279, 345, 357, 418, 651, 762, 822, 876
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 744
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 488, 496
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 3 cut(s) 138, 329, 754
TaiI ACGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 133, 777, 815
TasI AATT 9 cut(s) 262, 279, 345, 357, 418, 651, 762, 822, 876
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 5 cut(s) 38, 187, 399, 501, 632
Tru1I TTAA 5 cut(s) 114, 252, 305, 314, 1051
Tru9I TTAA 5 cut(s) 114, 252, 305, 314, 1051
TscAI CASTG 1 cut(s) 759
TseI GCWGC 2 cut(s) 679, 788
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 2 cut(s) 392, 900
TspRI CASTG 1 cut(s) 759
VspI ATTAAT 1 cut(s) 252
XagI CCTNNNNNAGG 2 cut(s) 592, 779
XapI RAATTY 2 cut(s) 418, 762
XbaI TCTAGA 1 cut(s) 743
XceI RCATGY 1 cut(s) 1043
XhoI CTCGAG 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 934
XspI CTAG 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.