Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

29750170 .. 29751735

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGTTCTTTCAACTCAGATCATCATGATCATGGGAATTCAAAGATTCTAGTACAAGAGAATAATCCATTCATTAGGACATTGACACTCCACAGGCCTCAAAAATTGAATGTTTTCTCCACTCCCATGCTCTTGCAGCTGTTTGAGCATTTCCTCAACTACGAGCACGATGCCTTTATCAGGTTAGTCATTCTCAAAGGTAGCGGAAAAGCTTTTTCTGCCGGCGGTGATGTTGCTTATATAGCACGTCATCTCTACAATGGCAATTTGAGACATGCGCTCAAATTGTTCAAAATTGGATACACTCTAATGTATTTCCTAGCAACAAAAACTACCCTGCAGGTTTCTTTTCTTAATGGAATCACTATGGGGATGGGGGCAAGTGTTTCTATACACGGTAGCTTTCGTGTAGCAACAGAGAAGACAATGTTTGCTATGCCGGAAACAGCTATTGGATTGTTTCCTGATGTTGGTTCCTCTTACTACCTTTCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCAGAAATGCTTGCAGTGGGTCTAGCAACTCACTATGTTCCCTCATCTAAATTGGGTTTGCTAGAAGAAGCCTTAATAAGAAAACTAGGTGCTTCTTCAACTAATACAAGCTCAGCTGATGATTATGCTATTATTTCAGCTATTCTAGATGAATACTATGAGCAACCAGCTCCAAAAAGGAAGAGTGCTTACCACTATATGGATGTTATTGACAAGTGCTTTTCTCAATCAACAATGGAAGAAATATTAAGTAGCCTAGAAAAGGAGCTTGCTACCATAATCAACATAACTGATCACCATGAATGGTTATCGTCAGCAATTCAATCACTAAGACAGGCATCACCAACAAGTTTGAAGATTGCTTTAAGATCGATTCGAGGAGGAAGGAGGCTTCAAGGAGTTGGTGAGTGCATTGTTCACGAATATAGAATTATTTTTCATATTTTCCGTGGGGAAATCAGCAAGGACTTCATGGAGGGTTGCAGAGCTATGTTGTTTGACAAAGATAAGAACCCAAAGTGGAAGCCTTCTAGATTGGAGCTCGTCACGGACCAGATGGTTGAGCACTACTTCTCTAGGTTGGGTGATGACGAAGAATTAAAGCTCCCTCAAACATTCAATTTGCCTCTCACTGCCATTTCCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

399

Amino Acids

44.84

Weight (kDa)

7.29

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	25 - 374	3.9e-108	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	25 - 237	3.3e-22	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	748
AciI	CCGC	2 cut(s)	204, 225
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	4 cut(s)	180, 470, 748, 811
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
Alw21I	GWGCWC	3 cut(s)	168, 1092, 1116
Alw26I	GTCTC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	548, 1099
AsuHPI	GGTGA	5 cut(s)	239, 836, 882, 965, 1145
AvaII	GGWCC	2 cut(s)	548, 1099
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	1092
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	3 cut(s)	168, 1092, 1116
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	367, 1099
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	2 cut(s)	28, 841
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
BfmI	CTRYAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	2 cut(s)	548, 1099
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	548, 1099
BmiI	GGNNCC	2 cut(s)	475, 535
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	160, 896
BpiI	GAAGAC	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	920
BsaJI	CCNNGG	1 cut(s)	997
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 470, 748, 811
Bse118I	RCCGGY	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	920
BseDI	CCNNGG	1 cut(s)	997
BseGI	GGATG	2 cut(s)	378, 757
BseLI	CCNNNNNNNGG	4 cut(s)	180, 470, 748, 811
BseMII	CTCAG	2 cut(s)	30, 675
BseRI	GAGGAG	1 cut(s)	942
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	920
BsiHKAI	GWGCWC	3 cut(s)	168, 1092, 1116
BsiSI	CCGG	2 cut(s)	222, 440
BslI	CCNNNNNNNGG	4 cut(s)	180, 470, 748, 811
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	3 cut(s)	168, 1092, 1116
Bsp143I	GATC	4 cut(s)	19, 28, 841, 917
Bsp1720I	GCTNAGC	1 cut(s)	661
BspACI	CCGC	2 cut(s)	204, 225
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	29, 674
BspDI	ATCGAT	1 cut(s)	920
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	475, 535
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	997
BssMI	GATC	4 cut(s)	19, 28, 841, 917
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	398, 548
Bst6I	CTCTTC	1 cut(s)	725
BstC8I	GCNNGC	3 cut(s)	223, 561, 819
BstDEI	CTNAG	3 cut(s)	16, 661, 878
BstDSI	CCRYGG	1 cut(s)	997
BstENI	CCTNNNNNAGG	2 cut(s)	178, 809
BstF5I	GGATG	2 cut(s)	378, 757
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	4 cut(s)	22, 31, 844, 920
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	4 cut(s)	19, 28, 841, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 145, 218, 242
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	428
Bsu15I	ATCGAT	1 cut(s)	920
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	97
BsuTUI	ATCGAT	1 cut(s)	920
BtgI	CCRYGG	1 cut(s)	997
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	378, 757
BtsI	GCAGTG	2 cut(s)	570, 1179
BtsIMutI	CAGTG	2 cut(s)	570, 1179
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	223, 561, 819
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	548, 1099
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	6 cut(s)	26, 32, 127, 275, 848, 1021
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	3 cut(s)	16, 661, 878
DpnI	GATC	4 cut(s)	21, 30, 843, 919
DpnII	GATC	4 cut(s)	19, 28, 841, 917
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Ecl136II	GAGCTC	1 cut(s)	1090
Eco147I	AGGCCT	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	1092
Eco47I	GGWCC	2 cut(s)	548, 1099
Eco53kI	GAGCTC	1 cut(s)	1090
EcoICRI	GAGCTC	1 cut(s)	1090
EcoNI	CCTNNNNNAGG	2 cut(s)	178, 809
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	1092
FaeI	CATG	6 cut(s)	29, 35, 130, 278, 851, 1024
FatI	CATG	6 cut(s)	25, 31, 126, 274, 847, 1020
FbaI	TGATCA	2 cut(s)	28, 841
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	385, 764
FriOI	GRGCYC	1 cut(s)	1092
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	222, 440
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	6 cut(s)	29, 35, 130, 278, 851, 1024
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	4 cut(s)	46, 360, 504, 922
HpaII	CCGG	2 cut(s)	222, 440
HphI	GGTGA	5 cut(s)	239, 836, 882, 965, 1145
Hpy166II	GTNNAC	1 cut(s)	967
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	7 cut(s)	26, 464, 492, 551, 695, 968, 1080
Hpy8I	GTNNAC	1 cut(s)	967
HpyAV	CCTTC	2 cut(s)	927, 1086
HpyCH4III	ACNGT	2 cut(s)	398, 548
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	5 cut(s)	136, 340, 563, 960, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 145, 218, 242
HpyF3I	CTNAG	3 cut(s)	16, 661, 878
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	6 cut(s)	29, 35, 130, 278, 851, 1024
HspAI	GCGC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Ksp22I	TGATCA	2 cut(s)	28, 841
Kzo9I	GATC	4 cut(s)	19, 28, 841, 917
LmnI	GCTCC	4 cut(s)	724, 814, 1087, 1158
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	160, 896
MaeI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	1093
MalI	GATC	4 cut(s)	21, 30, 843, 919
MboI	GATC	4 cut(s)	19, 28, 841, 917
MboII	GAAGA	7 cut(s)	433, 626, 636, 742, 800, 916, 1154
MhlI	GDGCHC	3 cut(s)	168, 1092, 1116
MroNI	GCCGGC	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	5 cut(s)	354, 623, 797, 914, 1148
MslI	CAYNNNNRTG	3 cut(s)	30, 125, 308
MspA1I	CMGCKG	2 cut(s)	139, 665
MspI	CCGG	2 cut(s)	222, 440
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	136, 145, 218, 242
NaeI	GCCGGC	1 cut(s)	223
NdeII	GATC	4 cut(s)	19, 28, 841, 917
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	6 cut(s)	29, 35, 130, 278, 851, 1024
NlaIV	GGNNCC	2 cut(s)	475, 535
NmuCI	GTSAC	1 cut(s)	1093
NspI	RCATGY	1 cut(s)	278
PagI	TCATGA	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	97
PdiI	GCCGGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	46, 360, 504, 922
PflMI	CCANNNNNTGG	1 cut(s)	748
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	1092
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	475, 535
PspPI	GGNCC	2 cut(s)	548, 1099
PstI	CTGCAG	1 cut(s)	342
PvuII	CAGCTG	2 cut(s)	139, 665
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	3 cut(s)	30, 125, 308
SacI	GAGCTC	1 cut(s)	1092
SaqAI	TTAA	5 cut(s)	354, 623, 797, 914, 1148
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	4 cut(s)	19, 28, 841, 917
Sau96I	GGNCC	2 cut(s)	548, 1099
SbfI	CCTGCAGG	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	501
SdaI	CCTGCAGG	1 cut(s)	342
SduI	GDGCHC	3 cut(s)	168, 1092, 1116
SfaNI	GCATC	2 cut(s)	160, 896
SfcI	CTRYAG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	548, 1099
SmiMI	CAYNNNNRTG	3 cut(s)	30, 125, 308
Sse8387I	CCTGCAGG	1 cut(s)	342
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	204, 225
SspI	AATATT	1 cut(s)	795
SspMI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
SstI	GAGCTC	1 cut(s)	1092
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	398, 548
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	920, 925
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	4 cut(s)	46, 360, 504, 922
Tru1I	TTAA	5 cut(s)	354, 623, 797, 914, 1148
Tru9I	TTAA	5 cut(s)	354, 623, 797, 914, 1148
TscAI	CASTG	2 cut(s)	570, 1186
TseFI	GTSAC	1 cut(s)	1093
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	1093
TspDTI	ATGAA	5 cut(s)	61, 714, 864, 977, 1009
TspGWI	ACGGA	2 cut(s)	986, 1112
TspRI	CASTG	2 cut(s)	570, 1186
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	2 cut(s)	548, 1099
XagI	CCTNNNNNAGG	2 cut(s)	178, 809
XapI	RAATTY	1 cut(s)	37
XbaI	TCTAGA	2 cut(s)	694, 1079
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.