Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

49565211 .. 49566666

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTGGTTCCTCTTACTACCTTTCAAGACTTCTTGGATTCTTTGGAGAGTATCTTGGTCTTACATGCAAGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTATGTTCCCTCATCTAACTTGGGTTTGCTAGAAGAAGCCTTAATAAGAAAACTAGGCTCTTCTTCAACTAATACAAGCTCAACTGATGATTGTGCTATTATTTCAGCTATTCTAGATGAATACTCTGAGCAACCAGCTCCAAAAACGAAGAGTGCTTACCACTATATGGATGTTATTGACAAGTGTTTTTCTCAATCAACAGTGGAAGACATATTAAGCAGCCTAGAGAATGAGCTTGCTACCATAATCAACATAACTGATCACCATGAATGGTTATCGTCATCAATTCAGTCACTAAGATGGCATCACCAACAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

146

Amino Acids

16.17

Weight (kDa)

4.61

Isoelectric Point (pI)

67.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	24 - 140	2.2e-15	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	26, 186
AluBI	AGCT	4 cut(s)	198, 227, 257, 355
AluI	AGCT	4 cut(s)	198, 227, 257, 355
ApeKI	GCWGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	374, 419
AvaII	GGWCC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BbsI	GAAGAC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	414
BclI	TGATCA	1 cut(s)	379
BfaI	CTAG	5 cut(s)	110, 149, 173, 233, 344
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	9
BspQI	GCTCTTC	1 cut(s)	184
BssMI	GATC	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	86, 322
Bst6I	CTCTTC	2 cut(s)	184, 263
BstC8I	GCNNGC	2 cut(s)	99, 357
BstDEI	CTNAG	2 cut(s)	246, 416
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	99, 357
Cfr13I	GGNCC	1 cut(s)	86
CviAII	CATG	2 cut(s)	65, 386
CviJI	RGCY	7 cut(s)	158, 177, 198, 227, 257, 342, 355
CviKI_1	RGCY	7 cut(s)	158, 177, 198, 227, 257, 342, 355
DdeI	CTNAG	2 cut(s)	246, 416
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	184, 263
EarI	CTCTTC	2 cut(s)	184, 263
Eco47I	GGWCC	1 cut(s)	86
FaeI	CATG	2 cut(s)	68, 389
FaiI	YATR	8 cut(s)	66, 123, 285, 287, 332, 365, 374, 387
FatI	CATG	2 cut(s)	64, 385
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	5 cut(s)	110, 149, 173, 233, 344
GluI	GCNGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	68, 389
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	2 cut(s)	374, 419
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	26, 89, 233
HpyCH4III	ACNGT	2 cut(s)	86, 322
HpyCH4V	TGCA	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	246, 416
Hsp92II	CATG	2 cut(s)	68, 389
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	3 cut(s)	88, 102, 267
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	5 cut(s)	110, 149, 173, 233, 344
MaeIII	GTNAC	1 cut(s)	411
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	5 cut(s)	164, 171, 174, 280, 338
MluCI	AATT	1 cut(s)	405
MnlI	CCTC	2 cut(s)	21, 139
MseI	TTAA	2 cut(s)	161, 335
MslI	CAYNNNNRTG	2 cut(s)	69, 418
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	68, 389
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	411
NspI	RCATGY	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	86
RseI	CAYNNNNRTG	2 cut(s)	69, 418
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	161, 335
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	86
SetI	ASST	5 cut(s)	23, 200, 229, 259, 357
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	69, 418
Sse9I	AATT	1 cut(s)	405
SspMI	CTAG	5 cut(s)	110, 149, 173, 233, 344
TaaI	ACNGT	2 cut(s)	86, 322
TasI	AATT	1 cut(s)	405
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	161, 335
Tru9I	TTAA	2 cut(s)	161, 335
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	411
TspDTI	ATGAA	2 cut(s)	252, 402
TspRI	CASTG	1 cut(s)	327
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	5 cut(s)	110, 149, 173, 233, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.