RLG00000029082

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
32510457 .. 32518301
7845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029082

Sequence Viewer

Length: 1161 bp
ATGGCTTCTCTCAACTCAACCCGACGCGACGACGACGACGATTCGGTGGTTTTGGTACGAGAGGATTTCTTTGCGAGGACGTTGACATTGAACAGGCCTCGACAACTGAATGCCCTTAACTTTGAAATGATTTCTCGACTGTTGGAACTTTTCCTTGCATACGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGAAATTGGAGATTAGGTGCAATTTTTTTTCGAAAGGAGTTTACCTTAAACTACTTAATGGCAACATACAGTAAACCACAGGTTTCAATTCTGAATGGAATTGTCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGATTCCGTGTTGCAACTGAGAATTCGGTTTTTGCAATGCCAGAAACAGCTCTGGGACTTTTTCCAGATGTAGGTGCCTCTTATTATTTGTCCAGGCTTCCTGGATTCTTTGGAGAATACGTTGGTCTTACAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGCAGATCTATGCAAAGTTGATTCAAGTGAGTTCGCAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCAGCTCTAAAAGAGAGAAGTGCTTATTACCGGATGGATGTTATTGACAAGTGCTTTTCTAGAAGAACAGTGGAAGAAATTTTATCTGCCCTCGAGGAGGAGGCTGCAAAGAGGGCAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGACAAGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTTTGCGAGGAGAAGTCAGCAAGGACTTCAGAGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAGGAACCCAAAGTGGGAGCCTTCTAAATTGGAGCTCATCAATGATCATATGGTTGAGCAGTACTTCTCTAAGTTGGATGATGAAGAATGGGAAGAGTTAAAGCTCCCTGCAAGATTCAACTTGCCCGTAACTGCCATTGCAAAGCTTTGA

Protein Analysis

387

Amino Acids

43.36

Weight (kDa)

6.29

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 26 - 359 3.5e-129 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 28 - 256 4.1e-29 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 779
AccB1I GGYRCC 2 cut(s) 473, 533
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 678
AcsI RAATTY 2 cut(s) 421, 765
AcuI CTGAAG 2 cut(s) 881, 958
AfaI GTAC 2 cut(s) 57, 1073
AfiI CCNNNNNNNGG 4 cut(s) 470, 597, 784, 1024
AgsI TTSAA 9 cut(s) 91, 125, 348, 614, 639, 659, 830, 862, 1129
AjnI CCWGG 2 cut(s) 491, 499
AluBI AGCT 7 cut(s) 449, 662, 692, 992, 1045, 1114, 1156
AluI AGCT 7 cut(s) 449, 662, 692, 992, 1045, 1114, 1156
Alw21I GWGCWC 1 cut(s) 1047
AlwI GGATC 1 cut(s) 678
Ama87I CYCGRG 1 cut(s) 779
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 682, 791
ApoI RAATTY 2 cut(s) 421, 765
AseI ATTAAT 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 937
AsuHPI GGTGA 3 cut(s) 199, 239, 840
AsuII TTCGAA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 779
BanI GGYRCC 2 cut(s) 473, 533
BanII GRGCYC 1 cut(s) 1047
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 2 cut(s) 694, 778
BccI CCATC 3 cut(s) 398, 539, 715
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 2 cut(s) 493, 501
BclI TGATCA 1 cut(s) 1054
BfaI CTAG 1 cut(s) 747
BglII AGATCT 1 cut(s) 619
BisI GCNGC 3 cut(s) 237, 683, 792
BlsI GCNGC 3 cut(s) 238, 684, 793
BmcAI AGTACT 1 cut(s) 1073
Bme1390I CCNGG 2 cut(s) 493, 501
BmeT110I CYCGRG 1 cut(s) 779
BmiI GGNNCC 4 cut(s) 475, 535, 1016, 1029
BmrFI CCNGG 2 cut(s) 493, 501
BmsI GCATC 3 cut(s) 160, 694, 854
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 717
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 504, 534
Bsc4I CCNNNNNNNGG 4 cut(s) 470, 597, 784, 1024
Bse3DI GCAATG 2 cut(s) 441, 1146
BseBI CCWGG 2 cut(s) 493, 501
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 7 cut(s) 175, 390, 550, 685, 726, 730, 1093
BseLI CCNNNNNNNGG 4 cut(s) 470, 597, 784, 1024
BseMI GCAATG 2 cut(s) 441, 1146
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 4 cut(s) 179, 797, 800, 969
BseXI GCAGC 2 cut(s) 694, 778
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 2 cut(s) 473, 533
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 1 cut(s) 718
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 4 cut(s) 470, 597, 784, 1024
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 779
Bsp119I TTCGAA 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp143I GATC 4 cut(s) 619, 670, 875, 1054
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 409
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 4 cut(s) 475, 535, 1016, 1029
BspPI GGATC 1 cut(s) 678
BspQI GCTCTTC 1 cut(s) 202
BspT104I TTCGAA 1 cut(s) 292
BspT107I GGYRCC 2 cut(s) 473, 533
BsrDI GCAATG 2 cut(s) 441, 1146
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 619, 670, 875, 1054
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 2 cut(s) 493, 501
Bst4CI ACNGT 3 cut(s) 141, 332, 757
Bst6I CTCTTC 2 cut(s) 202, 1098
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 2 cut(s) 417, 1080
BstDSI CCRYGG 1 cut(s) 394
BstENI CCTNNNNNAGG 2 cut(s) 595, 782
BstF5I GGATG 7 cut(s) 175, 390, 550, 685, 726, 730, 1093
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 4 cut(s) 622, 673, 878, 1057
BstMBI GATC 4 cut(s) 619, 670, 875, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 218, 800
BstNI CCWGG 2 cut(s) 493, 501
BstSCI CCNGG 2 cut(s) 491, 499
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 694, 778
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 7 cut(s) 175, 390, 550, 685, 726, 730, 1093
BtsIMutI CAGTG 1 cut(s) 762
Cac8I GCNNGC 1 cut(s) 561
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 56, 1072
CviAII CATG 3 cut(s) 367, 395, 944
CviQI GTAC 2 cut(s) 56, 1072
DdeI CTNAG 2 cut(s) 417, 1080
DpnI GATC 4 cut(s) 621, 672, 877, 1056
DpnII GATC 4 cut(s) 619, 670, 875, 1054
Eam1104I CTCTTC 2 cut(s) 202, 1098
EarI CTCTTC 2 cut(s) 202, 1098
Ecl136II GAGCTC 1 cut(s) 1045
Eco130I CCWWGG 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 1047
Eco53kI GAGCTC 1 cut(s) 1045
Eco57I CTGAAG 2 cut(s) 881, 958
Eco88I CYCGRG 1 cut(s) 779
EcoICRI GAGCTC 1 cut(s) 1045
EcoNI CCTNNNNNAGG 2 cut(s) 595, 782
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 491, 499
EcoT14I CCWWGG 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 1047
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 3 cut(s) 370, 398, 947
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FaqI GGGAC 1 cut(s) 468
FatI CATG 3 cut(s) 366, 394, 943
FauNDI CATATG 1 cut(s) 1059
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 3 cut(s) 237, 683, 792
FokI GGATG 7 cut(s) 182, 377, 557, 672, 733, 737, 1100
FriOI GRGCYC 1 cut(s) 1047
Fsp4HI GCNGC 3 cut(s) 237, 683, 792
FspBI CTAG 1 cut(s) 747
GluI GCNGC 3 cut(s) 237, 683, 792
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 718
HgaI GACGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 370, 398, 947
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 1154
HinfI GANTC 6 cut(s) 41, 190, 402, 504, 635, 1125
HpaII CCGG 1 cut(s) 718
HphI GGTGA 3 cut(s) 199, 239, 840
Hpy166II GTNNAC 3 cut(s) 84, 303, 335
Hpy188I TCNGA 2 cut(s) 354, 977
Hpy188III TCNNGA 6 cut(s) 135, 248, 464, 611, 747, 923
Hpy8I GTNNAC 3 cut(s) 84, 303, 335
Hpy99I CGWCG 5 cut(s) 27, 32, 35, 38, 41
HpyAV CCTTC 3 cut(s) 254, 885, 1041
HpyCH4III ACNGT 3 cut(s) 141, 332, 757
HpyCH4IV ACGT 2 cut(s) 80, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 800
HpyF3I CTNAG 2 cut(s) 417, 1080
HpySE526I ACGT 2 cut(s) 80, 519
Hsp92II CATG 3 cut(s) 370, 398, 947
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 4 cut(s) 619, 670, 875, 1054
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 3 cut(s) 1027, 1042, 1119
Lsp1109I GCAGC 2 cut(s) 694, 778
LweI GCATC 3 cut(s) 160, 694, 854
MaeI CTAG 1 cut(s) 747
MaeII ACGT 2 cut(s) 80, 519
MaeIII GTNAC 1 cut(s) 1138
MalI GATC 4 cut(s) 621, 672, 877, 1056
MboI GATC 4 cut(s) 619, 670, 875, 1054
MboII GAAGA 6 cut(s) 219, 762, 773, 874, 1106, 1115
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 1047
MmeI TCCRAC 3 cut(s) 123, 981, 1065
MroXI GAANNNNTTC 1 cut(s) 937
MseI TTAA 5 cut(s) 117, 255, 308, 317, 1109
MspI CCGG 1 cut(s) 718
MspR9I CCNGG 2 cut(s) 493, 501
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 2 cut(s) 493, 501
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 218, 800
NcoI CCATGG 1 cut(s) 394
NdeI CATATG 1 cut(s) 1059
NdeII GATC 4 cut(s) 619, 670, 875, 1054
NlaIII CATG 3 cut(s) 370, 398, 947
NlaIV GGNNCC 4 cut(s) 475, 535, 1016, 1029
NspV TTCGAA 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 779
PceI AGGCCT 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 6 cut(s) 41, 190, 402, 504, 635, 1125
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 238, 684, 793
PshBI ATTAAT 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 1047
Psp6I CCWGG 2 cut(s) 491, 499
PspGI CCWGG 2 cut(s) 491, 499
PspN4I GGNNCC 4 cut(s) 475, 535, 1016, 1029
PspXI VCTCGAGB 1 cut(s) 779
PsuI RGATCY 1 cut(s) 619
RsaI GTAC 2 cut(s) 57, 1073
RsaNI GTAC 2 cut(s) 56, 1072
SacI GAGCTC 1 cut(s) 1047
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 5 cut(s) 117, 255, 308, 317, 1109
SatI GCNGC 3 cut(s) 237, 683, 792
Sau3AI GATC 4 cut(s) 619, 670, 875, 1054
ScaI AGTACT 1 cut(s) 1073
ScrFI CCNGG 2 cut(s) 493, 501
SduI GDGCHC 1 cut(s) 1047
SfaNI GCATC 3 cut(s) 160, 694, 854
Sfr274I CTCGAG 1 cut(s) 779
SfuI TTCGAA 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 779
SmlI CTYRAG 2 cut(s) 194, 779
SmoI CTYRAG 2 cut(s) 194, 779
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 747
SstI GAGCTC 1 cut(s) 1047
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 491, 499
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 141, 332, 757
TaiI ACGT 2 cut(s) 83, 522
TaqI TCGA 5 cut(s) 100, 136, 292, 780, 818
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 6 cut(s) 41, 190, 402, 504, 635, 1125
Tru1I TTAA 5 cut(s) 117, 255, 308, 317, 1109
Tru9I TTAA 5 cut(s) 117, 255, 308, 317, 1109
TscAI CASTG 1 cut(s) 762
TseI GCWGC 2 cut(s) 682, 791
TspDTI ATGAA 2 cut(s) 273, 1107
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 1 cut(s) 762
VspI ATTAAT 1 cut(s) 255
XagI CCTNNNNNAGG 2 cut(s) 595, 782
XapI RAATTY 2 cut(s) 421, 765
XbaI TCTAGA 1 cut(s) 746
XhoI CTCGAG 1 cut(s) 779
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 1 cut(s) 747
ZrmI AGTACT 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.