Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013980.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

10912 .. 11982

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013980.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atgctctcgcagctgtctgaactgttcctccgctacgagcacgatccccatgtcaagttggtcattctcaaagctaacggtaaggcactttcgccgggggacgacgttgcgtctgtaggtcatcatctctacaatggcaatttgagagctgctttcaaaagtttctcaactgcatacaccttaatgtacttggtggcaacaaagactacaccccaggtttcatttctcaatggaatgaccatggggaccggggcaggtgtttcgatacacggtagttttcgtgtggcaacggagaagacggtgtttgccataccggaagcagctatcggagcgtttcctgatgttggttcctcttatttcctatcaagacttcctggattctttggagagtatctcggtcttacaggtgccagattggacggccctgaaatgcttgctttgggtctaccaactcacttttttccctcatcgaaattggcttcggtagaagaagccctagtaagaacactcggtgcttttcctaatacaagctcaagtgatgaccatgcttttatttcagctattctagatgcatactctgagcaaccagctctgaaagtgaacagcgcttaccatcgtatggatgttattgacaagtgcttttctcaatccacagtggaagagattttaagtagccttgaaaaggagtttgctacattaaccaacataagtgatcatcatgaatggttatcttcatcaattcagtcaatgaaaaatgcatcgccattaagtttgaagattgctttgagatcgattcgagaaggaaggcggctgcaaggagttggtgagtgcattgttcgcgaatataggattatttgtcatgttttgcgcggggaaatcagcaaggatttcatggagggttgcagagctatactgttggacaaggataagaacccaaagtggaagccttctagattagagcttgtcactgaccagatggttggccactacttctctaggttgcatgatgacgaagaattaaagctccctcaaagatccaaattgtctgcaactgccatttccaagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

356

Amino Acids

39.26

Weight (kDa)

6.9

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	407
AccB7I	CCANNNNNTGG	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	445
AccII	CGCG	2 cut(s)	840, 870
AciI	CCGC	3 cut(s)	31, 808, 870
AclWI	GGATC	2 cut(s)	38, 1029
AcoI	YGGCCR	1 cut(s)	982
AdeI	CACNNNGTG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	607
AfiI	CCNNNNNNNGG	3 cut(s)	344, 619, 682
AgsI	TTSAA	3 cut(s)	157, 680, 775
AhdI	GACNNNNNGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	213, 373
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	38, 1029
Aor51HI	AGCGCT	1 cut(s)	607
AoxI	GGCC	2 cut(s)	421, 982
ApeKI	GCWGC	4 cut(s)	10, 149, 320, 811
AspLEI	GCGC	2 cut(s)	608, 870
AspS9I	GGNCC	2 cut(s)	246, 422
AsuC2I	CCSGG	2 cut(s)	96, 250
AsuHPI	GGTGA	1 cut(s)	836
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	984
BanI	GGYRCC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	22, 136, 332, 798
BccI	CCATC	2 cut(s)	621, 970
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	2 cut(s)	215, 375
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	2 cut(s)	96, 250
BfaI	CTAG	4 cut(s)	497, 566, 951, 996
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	609
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	5 cut(s)	11, 150, 321, 809, 812
BlsI	GCNGC	5 cut(s)	12, 151, 322, 810, 813
Bme1390I	CCNGG	4 cut(s)	96, 215, 250, 375
Bme18I	GGWCC	1 cut(s)	246
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	246, 422
BmiI	GGNNCC	3 cut(s)	247, 349, 409
BmrFI	CCNGG	4 cut(s)	96, 215, 250, 375
BmsI	GCATC	2 cut(s)	559, 767
BpiI	GAAGAC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	2 cut(s)	96, 250
Bsa29I	ATCGAT	1 cut(s)	791
BsaJI	CCNNGG	4 cut(s)	95, 213, 240, 249
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 619, 682
BseBI	CCWGG	2 cut(s)	215, 375
BseCI	ATCGAT	1 cut(s)	791
BseDI	CCNNGG	4 cut(s)	95, 213, 240, 249
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	3 cut(s)	344, 619, 682
BseMII	CTCAG	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	22, 136, 332, 798
Bsh1236I	CGCG	2 cut(s)	840, 870
BshFI	GGCC	2 cut(s)	423, 984
BshNI	GGYRCC	1 cut(s)	407
BshVI	ATCGAT	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	95, 249, 314
BslFI	GGGAC	2 cut(s)	113, 259
BslI	CCNNNNNNNGG	3 cut(s)	344, 619, 682
BsmFI	GGGAC	2 cut(s)	113, 259
BsnI	GGCC	2 cut(s)	423, 984
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	43, 712, 788, 1034
Bsp19I	CCATGG	1 cut(s)	240
Bsp68I	TCGCGA	1 cut(s)	840
BspACI	CCGC	3 cut(s)	31, 808, 870
BspANI	GGCC	2 cut(s)	423, 984
BspCNI	CTCAG	1 cut(s)	571
BspDI	ATCGAT	1 cut(s)	791
BspFNI	CGCG	2 cut(s)	840, 870
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	3 cut(s)	247, 349, 409
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	38, 1029
BspT107I	GGYRCC	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	95, 213, 240, 249
BssMI	GATC	4 cut(s)	43, 712, 788, 1034
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	215, 375
Bst4CI	ACNGT	6 cut(s)	24, 80, 272, 301, 655, 915
Bst6I	CTCTTC	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	579
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	2 cut(s)	840, 870
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	608, 870
BstKTI	GATC	4 cut(s)	46, 715, 791, 1037
BstMBI	GATC	4 cut(s)	43, 712, 788, 1034
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 329, 837
BstNI	CCWGG	2 cut(s)	215, 375
BstSCI	CCNGG	4 cut(s)	94, 213, 248, 373
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	2 cut(s)	840, 870
BstV1I	GCAGC	4 cut(s)	22, 136, 332, 798
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	1034
BstXI	CCANNNNNNTGG	1 cut(s)	980
BstYI	RGATCY	1 cut(s)	1034
Bsu15I	ATCGAT	1 cut(s)	791
BsuRI	GGCC	2 cut(s)	423, 984
BsuTUI	ATCGAT	1 cut(s)	791
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	744
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	660, 966
BtuMI	TCGCGA	1 cut(s)	840
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	435
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	2 cut(s)	608, 870
Cfr13I	GGNCC	2 cut(s)	246, 422
ClaI	ATCGAT	1 cut(s)	791
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	7 cut(s)	50, 241, 545, 719, 860, 892, 1004
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	4 cut(s)	45, 714, 790, 1036
DpnII	GATC	4 cut(s)	43, 712, 788, 1034
DraIII	CACNNNGTG	1 cut(s)	512
DriI	GACNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	982
Eam1104I	CTCTTC	1 cut(s)	654
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	654
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	246
Eco47III	AGCGCT	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	213, 373
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	2 cut(s)	574, 760
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	7 cut(s)	53, 244, 548, 722, 863, 895, 1007
FaqI	GGGAC	2 cut(s)	113, 259
FatI	CATG	7 cut(s)	49, 240, 544, 718, 859, 891, 1003
FauI	CCCGC	1 cut(s)	863
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	5 cut(s)	11, 150, 321, 809, 812
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	5 cut(s)	11, 150, 321, 809, 812
FspBI	CTAG	4 cut(s)	497, 566, 951, 996
GlaI	GCGC	2 cut(s)	607, 869
GluI	GCNGC	5 cut(s)	11, 150, 321, 809, 812
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	2 cut(s)	423, 984
HapII	CCGG	3 cut(s)	95, 249, 314
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	2 cut(s)	608, 870
Hin1II	CATG	7 cut(s)	53, 244, 548, 722, 863, 895, 1007
Hin6I	GCGC	2 cut(s)	606, 868
HinP1I	GCGC	2 cut(s)	606, 868
HindIII	AAGCTT	1 cut(s)	1064
HinfI	GANTC	2 cut(s)	378, 793
HpaII	CCGG	3 cut(s)	95, 249, 314
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	2 cut(s)	446, 601
Hpy188I	TCNGA	4 cut(s)	19, 329, 580, 594
Hpy188III	TCNNGA	7 cut(s)	338, 366, 566, 719, 797, 839, 951
Hpy8I	GTNNAC	2 cut(s)	446, 601
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	794, 798, 957
HpyCH4III	ACNGT	6 cut(s)	24, 80, 272, 301, 655, 915
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	8 cut(s)	173, 572, 758, 814, 831, 903, 1003, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 329, 837
HpyF3I	CTNAG	1 cut(s)	579
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	7 cut(s)	53, 244, 548, 722, 863, 895, 1007
HspAI	GCGC	2 cut(s)	606, 868
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	43, 712, 788, 1034
LmnI	GCTCC	2 cut(s)	329, 1029
Lsp1109I	GCAGC	4 cut(s)	22, 136, 332, 798
LweI	GCATC	2 cut(s)	559, 767
MaeI	CTAG	4 cut(s)	497, 566, 951, 996
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	964
MalI	GATC	4 cut(s)	45, 714, 790, 1036
MboI	GATC	4 cut(s)	43, 712, 788, 1034
MboII	GAAGA	6 cut(s)	307, 500, 671, 723, 787, 1025
MflI	RGATCY	1 cut(s)	1034
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	984
MluCI	AATT	5 cut(s)	139, 473, 738, 1016, 1040
MluNI	TGGCCA	1 cut(s)	984
MmeI	TCCRAC	1 cut(s)	897
MnlI	CCTC	5 cut(s)	38, 361, 475, 889, 1038
Mox20I	TGGCCA	1 cut(s)	984
Mph1103I	ATGCAT	2 cut(s)	574, 760
MscI	TGGCCA	1 cut(s)	984
MseI	TTAA	5 cut(s)	182, 668, 698, 767, 1019
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	984
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	3 cut(s)	95, 249, 314
MspR9I	CCNGG	4 cut(s)	96, 215, 250, 375
MvaI	CCWGG	2 cut(s)	215, 375
MvnI	CGCG	2 cut(s)	840, 870
MwoI	GCNNNNNNNGC	3 cut(s)	10, 329, 837
NciI	CCSGG	2 cut(s)	96, 250
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	43, 712, 788, 1034
NlaIII	CATG	7 cut(s)	53, 244, 548, 722, 863, 895, 1007
NlaIV	GGNNCC	3 cut(s)	247, 349, 409
NmuCI	GTSAC	1 cut(s)	964
NruI	TCGCGA	1 cut(s)	840
NsiI	ATGCAT	2 cut(s)	574, 760
PagI	TCATGA	1 cut(s)	718
PaqCI	CACCTGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	378, 793
PflMI	CCANNNNNTGG	1 cut(s)	619
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	5 cut(s)	12, 151, 322, 810, 813
Psp6I	CCWGG	2 cut(s)	213, 373
PspGI	CCWGG	2 cut(s)	213, 373
PspN4I	GGNNCC	3 cut(s)	247, 349, 409
PspPI	GGNCC	2 cut(s)	246, 422
PsrI	GAACNNNNNNTAC	2 cut(s)	593, 625
PsuI	RGATCY	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	840
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	5 cut(s)	182, 668, 698, 767, 1019
SatI	GCNGC	5 cut(s)	11, 150, 321, 809, 812
Sau3AI	GATC	4 cut(s)	43, 712, 788, 1034
Sau96I	GGNCC	2 cut(s)	246, 422
ScrFI	CCNGG	4 cut(s)	96, 215, 250, 375
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	559, 767
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	5 cut(s)	139, 473, 738, 1016, 1040
SsiI	CCGC	3 cut(s)	31, 808, 870
SspMI	CTAG	4 cut(s)	497, 566, 951, 996
StyD4I	CCNGG	4 cut(s)	94, 213, 248, 373
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	6 cut(s)	24, 80, 272, 301, 655, 915
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	263, 470, 791, 796
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	5 cut(s)	139, 473, 738, 1016, 1040
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	811
TfiI	GAWTC	2 cut(s)	378, 793
Tru1I	TTAA	5 cut(s)	182, 668, 698, 767, 1019
Tru9I	TTAA	5 cut(s)	182, 668, 698, 767, 1019
TscAI	CASTG	2 cut(s)	660, 973
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	4 cut(s)	10, 149, 320, 811
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	5 cut(s)	210, 723, 735, 764, 880
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	660, 973
Van91I	CCANNNNNTGG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	680
XbaI	TCTAGA	2 cut(s)	565, 950
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	4 cut(s)	497, 566, 951, 996
Zsp2I	ATGCAT	2 cut(s)	574, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.