Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

18084072 .. 18085099

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGATGGGGGCAGGTGTTTCTATACACGGTAGCTTTCGTGTAGCAACAGAGAAGACAGTGTTTGCTATTCCGGAAACAGTTATTGGATCGTTTCCTGATATTGGTTACTCTTACCACCTCTCAAGACTTCCTAGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCTAAAATGCTTGCTTTGGGTCTAGCAACTAACTTTGTTCCGTCATCTAAATTGGCTTTGCTAGAAGAAGCCTTGGCATCACCAACAAGTTTGAAGATTGCTTTAAGATCGATTCGAGGAGGAAGGCGGCTTCAAGGAGTTGGTGAGTGCATTGTTTGCGAATATAGAATTATTTATCATATTTTGTGTGGGGAAATCAACAATGATTTCATGGAGGGTTGCAGAGCTATACTCTTGGACAAGGATAAGAACCCAAAGTGGAAGCCTTCTAGATTAGAGCTTGTCACTGACCAGATGGTAGGCCACTACTTCTCTAGATTGCATGATAACGAAGAATTAAAGCTCCCTCAAAAATCTAAATTGTCTGCAACGGCCATTTCCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

191

Amino Acids

20.97

Weight (kDa)

9.06

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	1 - 87	5.6e-36	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	87 - 165	8.4e-20	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	277, 317
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	5 cut(s)	36, 410, 463, 526, 568
AluI	AGCT	5 cut(s)	36, 410, 463, 526, 568
AlwI	GGATC	1 cut(s)	97
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	2 cut(s)	484, 555
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	255, 338
AvaII	GGWCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	62
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	1 cut(s)	570
BfaI	CTAG	5 cut(s)	135, 206, 245, 453, 498
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
BpuEI	CTTGAG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	486, 557
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	2 cut(s)	486, 557
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	89, 290
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	2 cut(s)	486, 557
BspDI	ATCGAT	1 cut(s)	293
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	89, 290
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	4 cut(s)	32, 61, 82, 182
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	92, 293
BstMBI	GATC	2 cut(s)	89, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	486, 557
BsuTUI	ATCGAT	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	66, 468
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	293
CviAII	CATG	2 cut(s)	394, 506
DpnI	GATC	2 cut(s)	91, 292
DpnII	GATC	2 cut(s)	89, 290
EaeI	YGGCCR	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	397, 509
FaiI	YATR	6 cut(s)	26, 348, 363, 395, 413, 507
FatI	CATG	2 cut(s)	393, 505
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	5 cut(s)	135, 206, 245, 453, 498
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	486, 557
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	2 cut(s)	397, 509
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	2 cut(s)	138, 295
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	255, 338
Hpy188III	TCNNGA	5 cut(s)	74, 98, 126, 453, 498
HpyAV	CCTTC	2 cut(s)	300, 459
HpyCH4III	ACNGT	4 cut(s)	32, 61, 82, 182
HpyCH4V	TGCA	4 cut(s)	333, 405, 505, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	397, 509
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	89, 290
LmnI	GCTCC	1 cut(s)	531
LpnPI	CCDG	5 cut(s)	87, 111, 150, 184, 488
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	5 cut(s)	135, 206, 245, 453, 498
MaeIII	GTNAC	2 cut(s)	107, 466
MalI	GATC	2 cut(s)	91, 292
MboI	GATC	2 cut(s)	89, 290
MboII	GAAGA	4 cut(s)	67, 260, 289, 527
MluCI	AATT	4 cut(s)	233, 351, 518, 542
MnlI	CCTC	5 cut(s)	131, 293, 296, 391, 540
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	2 cut(s)	287, 521
MspI	CCGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	89, 290
NlaIII	CATG	2 cut(s)	397, 509
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	466
PaqCI	CACCTGC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	138, 295
PkrI	GCNGC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	287, 521
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	89, 290
Sau96I	GGNCC	1 cut(s)	182
SetI	ASST	8 cut(s)	19, 38, 123, 169, 412, 465, 528, 570
SfaNI	GCATC	1 cut(s)	269
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	233, 351, 518, 542
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	5 cut(s)	135, 206, 245, 453, 498
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	4 cut(s)	32, 61, 82, 182
TaqI	TCGA	2 cut(s)	293, 298
TasI	AATT	4 cut(s)	233, 351, 518, 542
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	138, 295
Tru1I	TTAA	2 cut(s)	287, 521
Tru9I	TTAA	2 cut(s)	287, 521
TscAI	CASTG	2 cut(s)	66, 475
TseFI	GTSAC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	66, 475
VpaK11BI	GGWCC	1 cut(s)	182
XbaI	TCTAGA	2 cut(s)	452, 497
XspI	CTAG	5 cut(s)	135, 206, 245, 453, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.