RLG00000027659

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
13657743 .. 13658568
826 bp
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UTR
Exon/CDS
Intron
RLM00000027659

Sequence Viewer

Length: 714 bp
ATGGGAGGTGGAGCTGGAATTTCTATACACGGTAGGTTTCGTGTAGCAACTGAGAACTCGGTGTTTGCTATGCCGAAAAAAGCACTTGGGTTGTTTCTAGATTTAGGTGCCTCTTATTTTTTGTCAAGGCTTCCTGGATTCTTTGGAGAATATCTTGGTCTTACTGGTGCTAGATTGGACGGTTCTGAAATGCTCGCTTGTGGTTTAGCAACTCACTTTGTTCCCTCAACCAAATTGGCCTCGTTAGAAGAAGCTCTAGTATCAAAAATTGCTTCAAAAAATATATCAAGCAGTGACCTTGGAGGAAATTTAAGTGCTCTTGAGAAGGAGCTTGCTACCATTGGTTTAAATGGTCGTGAATGGTTGTCTTCATCGATTAAATCCCTGAAGAAGGCATCGCCGATAAGTTTGAAGATTACATTGAGATCGATTCGAGAAGGAAGGATGCAAGGAGTTGGCGAGTGCCTTGTTCATGAGTACAGAATGTTTTGCCATGTTATGAGAGGGGAAATCAGCAAGGATTTTAGGGAGGGTTGTAGAGCTATATTGTTGGATAAGGATAAGAACCCGAAATGGGAGCCTTCTAAGTTGGAGCTTATCACTGATGAGATGGTTGATCACTACTTCTCGAAGTTAGATGATGATGAAGAATGGGAAGAGTTAAAGCTGCCTGAAAGATCTAATTTGTATGGTACTGCCATTGCTAAGCTTTAA

Protein Analysis

238

Amino Acids

26.11

Weight (kDa)

6.54

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 1 - 93 7e-39 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 1 - 96 1.5e-06 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 115 - 209 4.8e-27 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AcsI RAATTY 2 cut(s) 18, 307
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 2 cut(s) 479, 694
AfiI CCNNNNNNNGG 2 cut(s) 391, 574
AgsI TTSAA 2 cut(s) 276, 412
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 7 cut(s) 14, 254, 331, 542, 595, 667, 709
AluI AGCT 7 cut(s) 14, 254, 331, 542, 595, 667, 709
Alw21I GWGCWC 1 cut(s) 319
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 667
ApoI RAATTY 2 cut(s) 18, 307
BanI GGYRCC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 654
BccI CCATC 1 cut(s) 604
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 616
BfaI CTAG 3 cut(s) 98, 171, 257
BglII AGATCT 1 cut(s) 677
BisI GCNGC 1 cut(s) 668
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 1 cut(s) 669
Bme1390I CCNGG 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 109, 579
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 404, 435
BpiI GAAGAC 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 341
Bsa29I ATCGAT 2 cut(s) 374, 428
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 574
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 135
BseCI ATCGAT 2 cut(s) 374, 428
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 391, 574
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 654
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 2 cut(s) 374, 428
BsiHKAI GWGCWC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 391, 574
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 3 cut(s) 425, 616, 677
Bsp1720I GCTNAGC 1 cut(s) 705
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 2 cut(s) 374, 428
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 109, 579
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 3 cut(s) 425, 616, 677
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 32, 182
Bst6I CTCTTC 1 cut(s) 651
BstC8I GCNNGC 2 cut(s) 195, 333
BstDEI CTNAG 3 cut(s) 51, 585, 705
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 450
BstKTI GATC 3 cut(s) 428, 619, 680
BstMBI GATC 3 cut(s) 425, 616, 677
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 654
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 677
BstYI RGATCY 1 cut(s) 677
Bsu15I ATCGAT 2 cut(s) 374, 428
BsuRI GGCC 1 cut(s) 239
BsuTUI ATCGAT 2 cut(s) 374, 428
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 450
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 298, 600
Cac8I GCNNGC 2 cut(s) 195, 333
CciI TCATGA 1 cut(s) 472
ClaI ATCGAT 2 cut(s) 374, 428
Csp6I GTAC 2 cut(s) 478, 693
CviAII CATG 2 cut(s) 473, 494
CviQI GTAC 2 cut(s) 478, 693
DdeI CTNAG 3 cut(s) 51, 585, 705
DpnI GATC 3 cut(s) 427, 618, 679
DpnII GATC 3 cut(s) 425, 616, 677
DraI TTTAAA 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 407
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 476, 497
FaiI YATR 8 cut(s) 26, 71, 284, 474, 495, 500, 545, 690
FatI CATG 2 cut(s) 472, 493
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 1 cut(s) 668
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 668
FspBI CTAG 3 cut(s) 98, 171, 257
GluI GCNGC 1 cut(s) 668
HaeIII GGCC 1 cut(s) 239
Hin1II CATG 2 cut(s) 476, 497
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 2 cut(s) 138, 430
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 6 cut(s) 98, 320, 356, 434, 473, 628
HpyAV CCTTC 5 cut(s) 319, 385, 431, 435, 591
HpyCH4III ACNGT 2 cut(s) 32, 182
HpyCH4V TGCA 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 51, 585, 705
Hsp92II CATG 2 cut(s) 476, 497
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 425, 616, 677
LmnI GCTCC 4 cut(s) 11, 328, 577, 592
LpnPI CCDG 5 cut(s) 120, 147, 150, 398, 684
Lsp1109I GCAGC 1 cut(s) 654
LweI GCATC 2 cut(s) 404, 435
MaeI CTAG 3 cut(s) 98, 171, 257
MaeIII GTNAC 1 cut(s) 293
MalI GATC 3 cut(s) 427, 618, 679
MboI GATC 3 cut(s) 425, 616, 677
MboII GAAGA 6 cut(s) 260, 360, 400, 424, 659, 668
MflI RGATCY 1 cut(s) 677
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 5 cut(s) 18, 233, 267, 307, 682
MmeI TCCRAC 2 cut(s) 531, 570
MnlI CCTC 6 cut(s) 121, 235, 250, 296, 497, 523
MseI TTAA 5 cut(s) 311, 347, 378, 662, 712
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
NdeII GATC 3 cut(s) 425, 616, 677
NlaIII CATG 2 cut(s) 476, 497
NlaIV GGNNCC 2 cut(s) 109, 579
NmuCI GTSAC 1 cut(s) 293
PagI TCATGA 1 cut(s) 472
PfeI GAWTC 2 cut(s) 138, 430
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 109, 579
PsuI RGATCY 1 cut(s) 677
RsaI GTAC 2 cut(s) 479, 694
RsaNI GTAC 2 cut(s) 478, 693
SaqAI TTAA 5 cut(s) 311, 347, 378, 662, 712
SatI GCNGC 1 cut(s) 668
Sau3AI GATC 3 cut(s) 425, 616, 677
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 319
SfaNI GCATC 2 cut(s) 404, 435
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 5 cut(s) 18, 233, 267, 307, 682
SspMI CTAG 3 cut(s) 98, 171, 257
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 32, 182
TaqI TCGA 4 cut(s) 374, 428, 433, 629
TasI AATT 5 cut(s) 18, 233, 267, 307, 682
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 2 cut(s) 138, 430
Tru1I TTAA 5 cut(s) 311, 347, 378, 662, 712
Tru9I TTAA 5 cut(s) 311, 347, 378, 662, 712
TscAI CASTG 2 cut(s) 298, 607
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 667
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 360, 461, 660
TspRI CASTG 2 cut(s) 298, 607
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 2 cut(s) 18, 307
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 3 cut(s) 98, 171, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.