Rh1CG252100

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
51526778 .. 51528179
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG252100.1

Sequence Viewer

Length: 885 bp
ATGTACTTGGTGGCAACAAAGACTACACCCCAGGTTTCATTTCTCAATGGAATGACCATGGGAACCGGGGCAGGTGTTTCAATACACGGTAGTTTTCATGTGGCAACGGAGAAGATGGTGTTTGCCATGCCGGAAGCAGCTATCGGAGGGTTTCCTGATGTTGGTTCCTCTTATTTCCTATCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTTTTCCCTCAACGAAATTGGCTTCGGTAGAAGAAGCCCTAGTAAGAACTCTCGGTGCTTTTCCTAATACAAGCTCAAGTGATGACCATGCTTTTATTTCAGACATTCTAGATGCATACTCTGAGCAACCAGCTCTGAAAGTGAACAGTGCTTACCACCGTATGGATGTTATTGACAAGTGCTTTTCTCAATCCACAGTGGAAGAGATTTTAAGCCTTGAAAAGGAGTTTGCTACATTAACCAACATAAGTGATCATGATGAATGGTTATCTTCATCAATTCAGTCAATGAAAAATGCATCGCCATCAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGCGGCTGCAAGGAGTTGGTGAGTGCATTGTTCGCGAATATAGGATTATTTGTCATGTTTTGCGTGGGGAAATCAGCAAGGATTTCATGGAGGGTTGTAGAGCTATACTGTTGGACAAGGATAAGAACCCAAAGTGGAAGCCTTCTAGATTAGAGCTTGTCACTGACGAGATGGTTGGCCACTACTTCTCTAGGTTGCATGATGACGAAGAATTAAAGCTCCCTCAAAGATCCAAATTGTCTACAACTGCCATTTCCAAGTTTTGA

Protein Analysis

294

Amino Acids

32.51

Weight (kDa)

5.87

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 2 - 269 8.6e-84 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 6 - 158 1.4e-08 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 1 cut(s) 860
AccII CGCG 1 cut(s) 654
AciI CCGC 1 cut(s) 622
AclWI GGATC 1 cut(s) 843
AcoI YGGCCR 1 cut(s) 796
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 161, 436, 496
AgsI TTSAA 3 cut(s) 81, 494, 589
AjnI CCWGG 2 cut(s) 30, 190
AluBI AGCT 6 cut(s) 140, 348, 407, 722, 775, 838
AluI AGCT 6 cut(s) 140, 348, 407, 722, 775, 838
AlwI GGATC 1 cut(s) 843
AoxI GGCC 1 cut(s) 796
ApeKI GCWGC 2 cut(s) 137, 625
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 650
AvaII GGWCC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 798
BanI GGYRCC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 149, 612
BccI CCATC 3 cut(s) 109, 586, 784
BciT130I CCWGG 2 cut(s) 32, 192
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 67
BfaI CTAG 5 cut(s) 263, 314, 383, 765, 810
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 138, 623, 626
BlsI GCNGC 3 cut(s) 139, 624, 627
Bme1390I CCNGG 3 cut(s) 32, 67, 192
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 3 cut(s) 64, 166, 226
BmrFI CCNGG 3 cut(s) 32, 67, 192
BmsI GCATC 2 cut(s) 376, 581
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 605
BsaJI CCNNGG 3 cut(s) 30, 57, 66
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 436, 496
BseBI CCWGG 2 cut(s) 32, 192
BseCI ATCGAT 1 cut(s) 605
BseDI CCNNGG 3 cut(s) 30, 57, 66
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 3 cut(s) 161, 436, 496
BseMII CTCAG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 149, 612
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 798
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 605
BsiSI CCGG 2 cut(s) 66, 131
BslI CCNNNNNNNGG 3 cut(s) 161, 436, 496
BsnI GGCC 1 cut(s) 798
Bsp143I GATC 3 cut(s) 526, 602, 848
Bsp19I CCATGG 1 cut(s) 57
Bsp68I TCGCGA 1 cut(s) 654
BspACI CCGC 1 cut(s) 622
BspANI GGCC 1 cut(s) 798
BspCNI CTCAG 1 cut(s) 388
BspDI ATCGAT 1 cut(s) 605
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 3 cut(s) 64, 166, 226
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 30, 57, 66
BssMI GATC 3 cut(s) 526, 602, 848
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 32, 192
Bst4CI ACNGT 6 cut(s) 89, 239, 422, 434, 472, 729
Bst6I CTCTTC 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 654
BstKTI GATC 3 cut(s) 529, 605, 851
BstMBI GATC 3 cut(s) 526, 602, 848
BstMWI GCNNNNNNNGC 1 cut(s) 651
BstNI CCWGG 2 cut(s) 32, 192
BstSCI CCNGG 3 cut(s) 30, 65, 190
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 149, 612
BstX2I RGATCY 1 cut(s) 848
BstYI RGATCY 1 cut(s) 848
Bsu15I ATCGAT 1 cut(s) 605
BsuRI GGCC 1 cut(s) 798
BsuTUI ATCGAT 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 3 cut(s) 427, 477, 780
BtuMI TCGCGA 1 cut(s) 654
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 252
CciI TCATGA 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 605
Csp6I GTAC 1 cut(s) 4
CviAII CATG 8 cut(s) 58, 98, 127, 362, 530, 674, 706, 818
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 396
DpnI GATC 3 cut(s) 528, 604, 850
DpnII GATC 3 cut(s) 526, 602, 848
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 30, 190
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 2 cut(s) 391, 574
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 8 cut(s) 61, 101, 130, 365, 533, 677, 709, 821
FatI CATG 8 cut(s) 57, 97, 126, 361, 529, 673, 705, 817
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 860
Fnu4HI GCNGC 3 cut(s) 138, 623, 626
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 3 cut(s) 138, 623, 626
FspBI CTAG 5 cut(s) 263, 314, 383, 765, 810
GluI GCNGC 3 cut(s) 138, 623, 626
HaeIII GGCC 1 cut(s) 798
HapII CCGG 2 cut(s) 66, 131
Hin1II CATG 8 cut(s) 61, 101, 130, 365, 533, 677, 709, 821
HinfI GANTC 2 cut(s) 195, 607
HpaII CCGG 2 cut(s) 66, 131
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 2 cut(s) 418, 861
Hpy188I TCNGA 4 cut(s) 146, 376, 397, 411
Hpy188III TCNNGA 8 cut(s) 155, 183, 242, 383, 530, 611, 653, 765
Hpy8I GTNNAC 2 cut(s) 418, 861
HpyAV CCTTC 3 cut(s) 608, 612, 771
HpyCH4III ACNGT 6 cut(s) 89, 239, 422, 434, 472, 729
HpyCH4V TGCA 5 cut(s) 389, 572, 628, 645, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 651
HpyF3I CTNAG 1 cut(s) 396
Hsp92II CATG 8 cut(s) 61, 101, 130, 365, 533, 677, 709, 821
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 3 cut(s) 526, 602, 848
LmnI GCTCC 1 cut(s) 843
Lsp1109I GCAGC 2 cut(s) 149, 612
LweI GCATC 2 cut(s) 376, 581
MaeI CTAG 5 cut(s) 263, 314, 383, 765, 810
MaeIII GTNAC 1 cut(s) 778
MalI GATC 3 cut(s) 528, 604, 850
MboI GATC 3 cut(s) 526, 602, 848
MboII GAAGA 6 cut(s) 124, 317, 488, 537, 601, 839
MflI RGATCY 1 cut(s) 848
MlsI TGGCCA 1 cut(s) 798
MluCI AATT 4 cut(s) 290, 552, 830, 854
MluNI TGGCCA 1 cut(s) 798
MmeI TCCRAC 1 cut(s) 711
MnlI CCTC 5 cut(s) 140, 178, 292, 703, 852
Mox20I TGGCCA 1 cut(s) 798
Mph1103I ATGCAT 2 cut(s) 391, 574
MscI TGGCCA 1 cut(s) 798
MseI TTAA 3 cut(s) 485, 512, 833
Msp20I TGGCCA 1 cut(s) 798
MspI CCGG 2 cut(s) 66, 131
MspR9I CCNGG 3 cut(s) 32, 67, 192
MvaI CCWGG 2 cut(s) 32, 192
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 651
NciI CCSGG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 57
NdeII GATC 3 cut(s) 526, 602, 848
NlaIII CATG 8 cut(s) 61, 101, 130, 365, 533, 677, 709, 821
NlaIV GGNNCC 3 cut(s) 64, 166, 226
NmuCI GTSAC 1 cut(s) 778
NruI TCGCGA 1 cut(s) 654
NsiI ATGCAT 2 cut(s) 391, 574
PagI TCATGA 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 195, 607
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 190
PkrI GCNGC 3 cut(s) 139, 624, 627
Psp6I CCWGG 2 cut(s) 30, 190
PspGI CCWGG 2 cut(s) 30, 190
PspN4I GGNNCC 3 cut(s) 64, 166, 226
PspPI GGNCC 1 cut(s) 239
PsrI GAACNNNNNNTAC 2 cut(s) 410, 442
PsuI RGATCY 1 cut(s) 848
RruI TCGCGA 1 cut(s) 654
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 485, 512, 833
SatI GCNGC 3 cut(s) 138, 623, 626
Sau3AI GATC 3 cut(s) 526, 602, 848
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 3 cut(s) 32, 67, 192
SfaNI GCATC 2 cut(s) 376, 581
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 4 cut(s) 290, 552, 830, 854
SsiI CCGC 1 cut(s) 622
SspMI CTAG 5 cut(s) 263, 314, 383, 765, 810
StyD4I CCNGG 3 cut(s) 30, 65, 190
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 6 cut(s) 89, 239, 422, 434, 472, 729
TaqI TCGA 2 cut(s) 605, 610
TasI AATT 4 cut(s) 290, 552, 830, 854
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 2 cut(s) 195, 607
Tru1I TTAA 3 cut(s) 485, 512, 833
Tru9I TTAA 3 cut(s) 485, 512, 833
TscAI CASTG 3 cut(s) 427, 477, 787
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 2 cut(s) 137, 625
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 6 cut(s) 27, 86, 537, 549, 578, 694
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 3 cut(s) 427, 477, 787
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 239
XagI CCTNNNNNAGG 1 cut(s) 494
XbaI TCTAGA 2 cut(s) 382, 764
XmiI GTMKAC 1 cut(s) 860
XspI CTAG 5 cut(s) 263, 314, 383, 765, 810
Zsp2I ATGCAT 2 cut(s) 391, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.