Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

35930420 .. 35931871

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG236200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTTCTTTCAGCTCAGATCATCATGATCATGGGAATCCAGAGATTCTAGTACAAGAGAATAATCCATTCATTAGGACATTGACACTCCACCAACCTAAAAAATTGAATGTTATCTCCAATCCCATGATCTTCCGATTGTTTGAGCTGTTCCTCAACTACGAGCACGATGCCTTTGTCAAGTTAGTCATTCTCAAAGGTAGCGGAAAAGCTTTTTGTGCTGGTGGTGATGTTGTGTATGTAGCACGTCATCTCTACAATGGCAATTTGAGACATGCTCTCAATTTTTTCAAAATTGGATACACTCTAATGTATTTCCTAGCAACAAAAACTACACTACAAGTTTCATTTCTTAATGGAATCACTATGGGGAGTGGGGCAGGTATTTCTATACACGGTAGCTTTCGTGTAGCAACGGAGAAGACAGTGTTTGCTATGCCAGAAACAGCTATTGGAGGGTTTCCTGATGTTGGTTCCTTTTACTACCTTTCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCTAGATTGGACGGTCCTGAAATGCTTTCTTTGGGTCTAGCAACTCACTATGTTCCCTCATCTAACTTGTGTTTGCTAGAAGAAGCCTTAATAAGAAAACTAGGCGCTTCTTCAACTAATACAAGCTCAACTGATGATTATGCTATTATTTCAGCTATTCTAGATGAATACTCTGAGCAACCAGCTCCAAAAACCAAGAGTGCTTACCACTATATGGATGTTATTGACAAGTGTTTTTCTCAATCAACAGTGGAAGACATAATAAGTAGCCTAGAGAATGAGCTCGCTACCATAATCAACATAACTGATCACCATGAATGGTTATCGTCAGCAATTCAGTCACTAAGACAGGCATCACCAACAAGTTTGAAGATTACTTTAAGATCGATTCGAGGAGGAAGGCGGCTTCAAGGAGTTGGTGAGTGCATTGTTCACGAATATAGAATTATTTCTCATGTTTTGCGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

334

Amino Acids

36.95

Weight (kDa)

6.53

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	25 - 333	4.9e-94	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	25 - 218	4.2e-22	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	748
AciI	CCGC	2 cut(s)	204, 937
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	470, 748
AgsI	TTSAA	6 cut(s)	109, 292, 492, 648, 904, 944
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	9 cut(s)	15, 148, 212, 402, 449, 660, 689, 719, 817
AluI	AGCT	9 cut(s)	15, 148, 212, 402, 449, 660, 689, 719, 817
Alw21I	GWGCWC	2 cut(s)	168, 819
Alw26I	GTCTC	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	982
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	239, 836, 882, 965
AvaII	GGWCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	819
BbsI	GAAGAC	2 cut(s)	428, 795
Bbv12I	GWGCWC	2 cut(s)	168, 819
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	2 cut(s)	28, 841
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
BfoI	RGCGCY	1 cut(s)	642
BfuAI	ACCTGC	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	938
BlsI	GCNGC	1 cut(s)	939
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	160, 896
BpiI	GAAGAC	2 cut(s)	428, 795
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
Bsa29I	ATCGAT	1 cut(s)	920
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 748
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	920
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	2 cut(s)	470, 748
BseMII	CTCAG	2 cut(s)	30, 699
BseRI	GAGGAG	1 cut(s)	942
BshVI	ATCGAT	1 cut(s)	920
BsiHKAI	GWGCWC	2 cut(s)	168, 819
BslI	CCNNNNNNNGG	2 cut(s)	470, 748
BsmAI	GTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	168, 819
Bsp143I	GATC	5 cut(s)	19, 28, 129, 841, 917
BspACI	CCGC	2 cut(s)	204, 937
BspCNI	CTCAG	2 cut(s)	29, 700
BspDI	ATCGAT	1 cut(s)	920
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	371
BssMI	GATC	5 cut(s)	19, 28, 129, 841, 917
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	4 cut(s)	398, 427, 548, 784
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	3 cut(s)	16, 708, 878
BstF5I	GGATG	1 cut(s)	757
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	5 cut(s)	22, 31, 132, 844, 920
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	5 cut(s)	19, 28, 129, 841, 917
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	499
BstV2I	GAAGAC	2 cut(s)	428, 795
Bsu15I	ATCGAT	1 cut(s)	920
BsuI	GTATCC	1 cut(s)	293
BsuTUI	ATCGAT	1 cut(s)	920
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	2 cut(s)	432, 789
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	819
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	548
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	6 cut(s)	26, 32, 127, 275, 848, 989
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	3 cut(s)	16, 708, 878
DpnI	GATC	5 cut(s)	21, 30, 131, 843, 919
DpnII	GATC	5 cut(s)	19, 28, 129, 841, 917
Ecl136II	GAGCTC	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	817
EcoICRI	GAGCTC	1 cut(s)	817
EcoRII	CCWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	819
FaeI	CATG	6 cut(s)	29, 35, 130, 278, 851, 992
FatI	CATG	6 cut(s)	25, 31, 126, 274, 847, 988
FbaI	TGATCA	2 cut(s)	28, 841
Fnu4HI	GCNGC	1 cut(s)	938
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	1 cut(s)	938
FspBI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	1 cut(s)	938
HaeII	RGCGCY	1 cut(s)	642
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	6 cut(s)	29, 35, 130, 278, 851, 992
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	5 cut(s)	37, 46, 360, 504, 922
HphI	GGTGA	4 cut(s)	239, 836, 882, 965
Hpy166II	GTNNAC	1 cut(s)	967
Hpy188I	TCNGA	3 cut(s)	19, 137, 709
Hpy188III	TCNNGA	7 cut(s)	26, 41, 464, 492, 551, 695, 968
Hpy8I	GTNNAC	1 cut(s)	967
HpyAV	CCTTC	1 cut(s)	927
HpyCH4III	ACNGT	4 cut(s)	398, 427, 548, 784
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	960
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	16, 708, 878
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	6 cut(s)	29, 35, 130, 278, 851, 992
HspAI	GCGC	1 cut(s)	639
Ksp22I	TGATCA	2 cut(s)	28, 841
Kzo9I	GATC	5 cut(s)	19, 28, 129, 841, 917
LmnI	GCTCC	1 cut(s)	724
LweI	GCATC	2 cut(s)	160, 896
MaeI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	873
MalI	GATC	5 cut(s)	21, 30, 131, 843, 919
MboI	GATC	5 cut(s)	19, 28, 129, 841, 917
MboII	GAAGA	6 cut(s)	124, 433, 626, 636, 800, 916
MhlI	GDGCHC	2 cut(s)	168, 819
MluCI	AATT	6 cut(s)	104, 265, 283, 294, 867, 978
MnlI	CCTC	5 cut(s)	164, 449, 601, 920, 923
MroXI	GAANNNNTTC	1 cut(s)	982
MseI	TTAA	3 cut(s)	354, 623, 914
MslI	CAYNNNNRTG	2 cut(s)	30, 308
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	5 cut(s)	19, 28, 129, 841, 917
NlaIII	CATG	6 cut(s)	29, 35, 130, 278, 851, 992
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	873
NspI	RCATGY	1 cut(s)	278
PagI	TCATGA	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	982
PfeI	GAWTC	5 cut(s)	37, 46, 360, 504, 922
PflMI	CCANNNNNTGG	1 cut(s)	748
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	939
Psp124BI	GAGCTC	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	548
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	2 cut(s)	30, 308
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	3 cut(s)	354, 623, 914
SatI	GCNGC	1 cut(s)	938
Sau3AI	GATC	5 cut(s)	19, 28, 129, 841, 917
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	168, 819
SfaNI	GCATC	2 cut(s)	160, 896
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	30, 308
Sse9I	AATT	6 cut(s)	104, 265, 283, 294, 867, 978
SsiI	CCGC	2 cut(s)	204, 937
SspMI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806
SstI	GAGCTC	1 cut(s)	819
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	4 cut(s)	398, 427, 548, 784
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	920, 925
TasI	AATT	6 cut(s)	104, 265, 283, 294, 867, 978
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	1 cut(s)	940
TfiI	GAWTC	5 cut(s)	37, 46, 360, 504, 922
Tru1I	TTAA	3 cut(s)	354, 623, 914
Tru9I	TTAA	3 cut(s)	354, 623, 914
TscAI	CASTG	2 cut(s)	432, 789
TseFI	GTSAC	1 cut(s)	873
Tsp45I	GTSAC	1 cut(s)	873
TspDTI	ATGAA	4 cut(s)	61, 336, 714, 864
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	432, 789
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	548
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	982
XspI	CTAG	8 cut(s)	50, 320, 537, 572, 611, 635, 695, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.