Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

41180763 .. 41181783

Gene Structure 1021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTGGAGAAGGAGCAGGCAAGACCGCTAGCCCCGGCCGGCTACCGACCCAGCAGCGACGACAATGAAGCTGCCCTCCAAATAAAAAGAGCTCGACAAAAGAAGTTCATAAACTGCTGCGGGTGCATAACAGCCATAGTGCTAATCCAAGCCGTAGTTATCATAATCCTAGCTTTCACCGTGTTCCGAGTCAAGGAGCCGAAAATCAACATGAACAAAGTCACAGTCACAAAGCTCGAGCTGATCAATGGCACCACCCCCAAGCCGGGCACCAACATCTCGTTAACGGCTGATGTTTCGGTGAAGAATCCAAACGTGGCTTCGTTCAAGTACAGCAACACCACCACCACGCTGTATTATCACGGCACGGTGGTGGGGGAGGCTAGAGGTCCGCCTGGACGATCTAAGGCCCGACGGACGACGAGGATGAACATCACGGTGGATATTATCACCGACATGCTGATTACCAACCCGAACCTGAAGGCGGACGTGGATTCGGGGCTGTTGACGATGAGCAGCTATTCTAGGATTCCGGGAAGGGTGAACATGTTGAATATAGTGAAGAAGCATGTCATTGTGAAGATGAACTGTACTATGACGGTTAATATTTCTAGCCAGGCGATTCAAGAACAAAAGTGCAAGAGGAAGGTTAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

219

Amino Acids

24.16

Weight (kDa)

10.02

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	99 - 198	9.2e-12	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	251, 269
AciI	CCGC	4 cut(s)	26, 120, 392, 485
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	332, 592
AfiI	CCNNNNNNNGG	4 cut(s)	193, 265, 266, 484
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	328, 553, 626
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	394, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	6 cut(s)	71, 92, 173, 235, 241, 519
AluI	AGCT	6 cut(s)	71, 92, 173, 235, 241, 519
Alw21I	GWGCWC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	36, 408
ApeKI	GCWGC	4 cut(s)	54, 71, 117, 516
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspS9I	GGNCC	2 cut(s)	389, 409
AsuC2I	CCSGG	3 cut(s)	35, 267, 534
AsuHPI	GGTGA	4 cut(s)	169, 313, 442, 553
AsuNHI	GCTAGC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	272
BanI	GGYRCC	2 cut(s)	251, 269
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	4 cut(s)	58, 66, 104, 528
BceAI	ACGGC	3 cut(s)	137, 303, 379
BciT130I	CCWGG	2 cut(s)	396, 617
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	3 cut(s)	35, 267, 534
BfaI	CTAG	5 cut(s)	29, 170, 384, 525, 612
BfmI	CTRYAG	1 cut(s)	656
BisI	GCNGC	4 cut(s)	55, 72, 118, 517
BlsI	GCNGC	4 cut(s)	56, 73, 119, 518
Bme1390I	CCNGG	5 cut(s)	35, 267, 396, 534, 617
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	389, 409
BmiI	GGNNCC	3 cut(s)	198, 253, 271
BmrFI	CCNGG	5 cut(s)	35, 267, 396, 534, 617
BmtI	GCTAGC	1 cut(s)	32
BpuMI	CCSGG	3 cut(s)	35, 267, 534
BsaBI	GATNNNNATC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 265, 266, 484
Bse118I	RCCGGY	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	396, 617
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	432
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	4 cut(s)	193, 265, 266, 484
BseSI	GKGCMC	1 cut(s)	272
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	58, 66, 104, 528
BseYI	CCCAGC	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	38, 410
BshNI	GGYRCC	2 cut(s)	251, 269
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	4 cut(s)	35, 39, 266, 533
BslI	CCNNNNNNNGG	4 cut(s)	193, 265, 266, 484
BsnI	GGCC	2 cut(s)	38, 410
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	94, 272
Bsp143I	GATC	2 cut(s)	243, 401
BspACI	CCGC	4 cut(s)	26, 120, 392, 485
BspANI	GGCC	2 cut(s)	38, 410
BspLI	GGNNCC	3 cut(s)	198, 253, 271
BspOI	GCTAGC	1 cut(s)	32
BspT107I	GGYRCC	2 cut(s)	251, 269
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	243, 401
Bst2UI	CCWGG	2 cut(s)	396, 617
Bst4CI	ACNGT	6 cut(s)	181, 226, 370, 439, 590, 601
BstC8I	GCNNGC	3 cut(s)	18, 30, 40
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	2 cut(s)	246, 404
BstMBI	GATC	2 cut(s)	243, 401
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	2 cut(s)	396, 617
BstNSI	RCATGY	3 cut(s)	460, 550, 572
BstSCI	CCNGG	5 cut(s)	33, 265, 394, 532, 615
BstSFI	CTRYAG	1 cut(s)	656
BstSLI	GKGCMC	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	58, 66, 104, 528
BstZI	CGGCCG	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	38, 410
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	432
Cac8I	GCNNGC	3 cut(s)	18, 30, 40
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	389, 409
Csp6I	GTAC	2 cut(s)	331, 591
CviAII	CATG	4 cut(s)	211, 457, 547, 569
CviQI	GTAC	2 cut(s)	331, 591
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	245, 403
DpnII	GATC	2 cut(s)	243, 401
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
EciI	GGCGGA	2 cut(s)	381, 500
Ecl136II	GAGCTC	1 cut(s)	92
EclXI	CGGCCG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	389
Eco52I	CGGCCG	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	394, 615
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	4 cut(s)	214, 460, 550, 572
FatI	CATG	4 cut(s)	210, 456, 546, 568
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	55, 72, 118, 517
FokI	GGATG	1 cut(s)	439
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	4 cut(s)	55, 72, 118, 517
FspBI	CTAG	5 cut(s)	29, 170, 384, 525, 612
GluI	GCNGC	4 cut(s)	55, 72, 118, 517
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	38, 410
HapII	CCGG	4 cut(s)	35, 39, 266, 533
Hin1II	CATG	4 cut(s)	214, 460, 550, 572
HincII	GTYRAC	2 cut(s)	285, 507
HindII	GTYRAC	2 cut(s)	285, 507
HinfI	GANTC	5 cut(s)	189, 307, 494, 529, 622
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	4 cut(s)	35, 39, 266, 533
HphI	GGTGA	4 cut(s)	169, 313, 442, 553
Hpy166II	GTNNAC	3 cut(s)	285, 507, 544
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	3 cut(s)	285, 507, 544
Hpy99I	CGWCG	3 cut(s)	62, 417, 424
HpyAV	CCTTC	4 cut(s)	4, 475, 531, 640
HpyCH4III	ACNGT	6 cut(s)	181, 226, 370, 439, 590, 601
HpyCH4IV	ACGT	2 cut(s)	315, 489
HpyCH4V	TGCA	2 cut(s)	126, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	315, 489
Hsp92II	CATG	4 cut(s)	214, 460, 550, 572
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	243
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	243, 401
LmnI	GCTCC	2 cut(s)	13, 196
Lsp1109I	GCAGC	4 cut(s)	58, 66, 104, 528
MaeI	CTAG	5 cut(s)	29, 170, 384, 525, 612
MaeII	ACGT	2 cut(s)	315, 489
MaeIII	GTNAC	2 cut(s)	220, 226
MalI	GATC	2 cut(s)	245, 403
MboI	GATC	2 cut(s)	243, 401
MboII	GAAGA	3 cut(s)	316, 574, 592
MhlI	GDGCHC	2 cut(s)	94, 272
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	86, 373, 380, 417, 636
MroNI	GCCGGC	1 cut(s)	38
MseI	TTAA	3 cut(s)	284, 603, 651
MslI	CAYNNNNRTG	3 cut(s)	371, 437, 455
MspI	CCGG	4 cut(s)	35, 39, 266, 533
MspR9I	CCNGG	5 cut(s)	35, 267, 396, 534, 617
MvaI	CCWGG	2 cut(s)	396, 617
MwoI	GCNNNNNNNGC	1 cut(s)	123
NaeI	GCCGGC	1 cut(s)	40
NciI	CCSGG	3 cut(s)	35, 267, 534
NdeII	GATC	2 cut(s)	243, 401
NgoMIV	GCCGGC	1 cut(s)	38
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	214, 460, 550, 572
NlaIV	GGNNCC	3 cut(s)	198, 253, 271
NmuCI	GTSAC	2 cut(s)	220, 226
NspI	RCATGY	3 cut(s)	460, 550, 572
OliI	CACNNNNGTG	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	236
PciI	ACATGT	1 cut(s)	546
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	4 cut(s)	307, 494, 529, 622
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	4 cut(s)	56, 73, 119, 518
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PscI	ACATGT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	394, 615
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	394, 615
PspN4I	GGNNCC	3 cut(s)	198, 253, 271
PspPI	GGNCC	2 cut(s)	389, 409
PspXI	VCTCGAGB	1 cut(s)	236
RsaI	GTAC	2 cut(s)	332, 592
RsaNI	GTAC	2 cut(s)	331, 591
RseI	CAYNNNNRTG	3 cut(s)	371, 437, 455
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	284, 603, 651
SatI	GCNGC	4 cut(s)	55, 72, 118, 517
Sau3AI	GATC	2 cut(s)	243, 401
Sau96I	GGNCC	2 cut(s)	389, 409
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	5 cut(s)	35, 267, 396, 534, 617
SduI	GDGCHC	2 cut(s)	94, 272
SfcI	CTRYAG	1 cut(s)	656
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	3 cut(s)	371, 437, 455
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SsiI	CCGC	4 cut(s)	26, 120, 392, 485
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	5 cut(s)	29, 170, 384, 525, 612
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	5 cut(s)	33, 265, 394, 532, 615
TaaI	ACNGT	6 cut(s)	181, 226, 370, 439, 590, 601
TaiI	ACGT	2 cut(s)	318, 492
TaqI	TCGA	2 cut(s)	94, 237
TatI	WGTACW	2 cut(s)	330, 590
TfiI	GAWTC	4 cut(s)	307, 494, 529, 622
Tru1I	TTAA	3 cut(s)	284, 603, 651
Tru9I	TTAA	3 cut(s)	284, 603, 651
TseFI	GTSAC	2 cut(s)	220, 226
TseI	GCWGC	4 cut(s)	54, 71, 117, 516
Tsp45I	GTSAC	2 cut(s)	220, 226
TspDTI	ATGAA	5 cut(s)	81, 97, 227, 443, 599
TspGWI	ACGGA	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	389
XceI	RCATGY	3 cut(s)	460, 550, 572
XhoI	CTCGAG	1 cut(s)	236
XspI	CTAG	5 cut(s)	29, 170, 384, 525, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.