Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

18736384 .. 18737407

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTTCTTTCAACCAGGTTTTGGTACAAGAATCTTTGTTCGTGAGGACATTGACACCAAACAGGCCTCGCCAACTGAACACCCTTTCCCTTGAAATGCTCTCTCGGCTCTCCCAACTGTTCCTGGCGTATGACAATAGTTCCAATGTCAAGTTGAACATTCTCAAAAGTAACGGAAGAGCATTTTGTGCCAGTGGTGACGTAGCTGCGGTGCACCGTCATTTTCTTAAAGGAAATTTGAAATTTGGTGCAATAACTAGTCAGAAGATGCTTAACTTAACCTACTTTGTAGCAACATGCACTAAACCCCAAGTATGTCTGAATTTTGCACAATGTTTCCTTTACTTTTTTATGCTCCGTGGCGTCGGTATTTCAGTACACGGTAAATTCCGTGCAGTAACAGAGAATTCAGTCTTTGCAATGCCGGAAACAGCTCTGGGATTGTTTCCCGATGTCGGTGCATCTTATTTCTTGTCAAGACTTTCTGCATTTTTTGGTGAGTATTTGGGTCTTACAGGTGCAAGATTGATTGGTGCTGAAATGCTTGCATGTGGTCTAGCGACTCACTATGTGCCCTCAGCCAAATTGTCTTTACTGGAAGAAGCCCTAAAATGCCGAGTAGCTTCATCTATTTCATCAAGCTGTGATCATGCTTCTACTATTTCAGCAATTATAGATGAATACTCGCTGAAGAAACCAGCTTTGAGTGAAAAAGTGCTTATTACAAAAGGGATATTGTTGACAAGTGCTTTTCTAAACAGACAGTGGAAGAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

260

Amino Acids

28.49

Weight (kDa)

9.53

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	22
AciI	CCGC	1 cut(s)	209
AcsI	RAATTY	6 cut(s)	235, 242, 322, 386, 406, 773
AcuI	CTGAAG	1 cut(s)	710
AcyI	GRCGYC	1 cut(s)	363
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	2 cut(s)	27, 378
AfiI	CCNNNNNNNGG	2 cut(s)	22, 455
AgsI	TTSAA	4 cut(s)	13, 95, 157, 241
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	15, 123
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	5 cut(s)	206, 434, 623, 642, 701
AluI	AGCT	5 cut(s)	206, 434, 623, 642, 701
Alw21I	GWGCWC	1 cut(s)	216
Alw44I	GTGCAC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	65
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	6 cut(s)	235, 242, 322, 386, 406, 773
AsuHPI	GGTGA	2 cut(s)	209, 509
BaeGI	GKGCMC	2 cut(s)	216, 576
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	2 cut(s)	17, 125
BclI	TGATCA	1 cut(s)	646
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	2 cut(s)	258, 557
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	17, 125
BmrFI	CCNGG	2 cut(s)	17, 125
BmsI	GCATC	2 cut(s)	258, 470
Bpu10I	CCTNAGC	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 455
Bse1I	ACTGG	2 cut(s)	192, 600
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	17, 125
BseDI	CCNNGG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	22, 455
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	192, 600
BseSI	GKGCMC	2 cut(s)	216, 576
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	22, 455
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	216, 576
Bsp143I	GATC	1 cut(s)	646
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	590
BspQI	GCTCTTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	192, 600
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	646
BssNI	GRCGYC	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	17, 125
Bst4CI	ACNGT	4 cut(s)	120, 218, 383, 765
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	1 cut(s)	577
BstDSI	CCRYGG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	649
BstMBI	GATC	1 cut(s)	646
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 188
BstNI	CCWGG	2 cut(s)	17, 125
BstNSI	RCATGY	2 cut(s)	300, 552
BstSCI	CCNGG	2 cut(s)	15, 123
BstSLI	GKGCMC	2 cut(s)	216, 576
BstV1I	GCAGC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	199, 770
Cac8I	GCNNGC	1 cut(s)	546
CseI	GACGC	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	26, 377
CviAII	CATG	3 cut(s)	297, 549, 650
CviQI	GTAC	2 cut(s)	26, 377
DdeI	CTNAG	1 cut(s)	577
DpnI	GATC	1 cut(s)	648
DpnII	GATC	1 cut(s)	646
DraIII	CACNNNGTG	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	15, 123
FaeI	CATG	3 cut(s)	300, 552, 653
FaiI	YATR	8 cut(s)	132, 298, 316, 353, 550, 570, 651, 674
FatI	CATG	3 cut(s)	296, 548, 649
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	258, 557
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	300, 552, 653
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HinfI	GANTC	2 cut(s)	32, 562
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	209, 509
Hpy166II	GTNNAC	3 cut(s)	214, 379, 741
Hpy188I	TCNGA	2 cut(s)	264, 321
Hpy188III	TCNNGA	3 cut(s)	43, 449, 477
Hpy8I	GTNNAC	3 cut(s)	214, 379, 741
Hpy99I	CGWCG	1 cut(s)	368
HpyCH4III	ACNGT	4 cut(s)	120, 218, 383, 765
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 188
HpyF3I	CTNAG	1 cut(s)	577
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	300, 552, 653
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	1 cut(s)	646
LguI	GCTCTTC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	258, 470
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	2 cut(s)	258, 557
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	170, 197, 397
MalI	GATC	1 cut(s)	648
MboI	GATC	1 cut(s)	646
MboII	GAAGA	4 cut(s)	189, 277, 611, 703
MhlI	GDGCHC	2 cut(s)	216, 576
MluCI	AATT	8 cut(s)	235, 242, 322, 386, 406, 584, 669, 773
MlyI	GAGTC	1 cut(s)	556
MnlI	CCTC	3 cut(s)	39, 78, 586
MseI	TTAA	4 cut(s)	228, 273, 278, 778
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	17, 125
MvaI	CCWGG	2 cut(s)	17, 125
MwoI	GCNNNNNNNGC	2 cut(s)	106, 188
NdeII	GATC	1 cut(s)	646
NlaIII	CATG	3 cut(s)	300, 552, 653
NmeAIII	GCCGAG	2 cut(s)	85, 641
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	2 cut(s)	300, 552
PceI	AGGCCT	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
Psp6I	CCWGG	2 cut(s)	15, 123
PspGI	CCWGG	2 cut(s)	15, 123
RsaI	GTAC	2 cut(s)	27, 378
RsaNI	GTAC	2 cut(s)	26, 377
SapI	GCTCTTC	1 cut(s)	172
SaqAI	TTAA	4 cut(s)	228, 273, 278, 778
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	646
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	17, 125
SduI	GDGCHC	2 cut(s)	216, 576
SetI	ASST	9 cut(s)	21, 204, 208, 284, 436, 520, 625, 644, 703
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	258, 470
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	8 cut(s)	235, 242, 322, 386, 406, 584, 669, 773
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	2 cut(s)	258, 557
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	15, 123
TaaI	ACNGT	4 cut(s)	120, 218, 383, 765
TaiI	ACGT	1 cut(s)	204
TasI	AATT	8 cut(s)	235, 242, 322, 386, 406, 584, 669, 773
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	4 cut(s)	228, 273, 278, 778
Tru9I	TTAA	4 cut(s)	228, 273, 278, 778
TscAI	CASTG	2 cut(s)	199, 770
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	615, 624, 693
TspGWI	ACGGA	3 cut(s)	189, 347, 380
TspRI	CASTG	2 cut(s)	199, 770
Van91I	CCANNNNNTGG	1 cut(s)	22
VneI	GTGCAC	1 cut(s)	212
XapI	RAATTY	6 cut(s)	235, 242, 322, 386, 406, 773
XceI	RCATGY	2 cut(s)	300, 552
XspI	CTAG	2 cut(s)	258, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.