Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

35920641 .. 35921176

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG236100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAAAATGCATCGCCATTAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGCGGCTGCAAGGAGTTGGTGAGTGCATTGTTCGCGAATATAGGATTATTTGTCATGTTTTGCGTGGGGAAATCAGCAAGGATTTCATGGAGGGTTGCAGAGCTATACTGTTGGACAAGGATAAGAACCCAAAGTGGAAGCCTTCTAGATTAGAGCTTGTCACTGACCAGATGGTTGGCCACTACTTCTCTAGGTTGCATGATGACGAAGAATTAAAGCTCCCTCAAAGATCCAAATTGTCTGCAACTGCCATTTCCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

107

Amino Acids

12.33

Weight (kDa)

9.62

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	1 - 82	2.2e-23	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	4 cut(s)	161, 214, 277, 319
AluI	AGCT	4 cut(s)	161, 214, 277, 319
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	204, 249
BisI	GCNGC	2 cut(s)	62, 65
BlsI	GCNGC	2 cut(s)	63, 66
BmsI	GCATC	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	44
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	41, 287
Bsp68I	TCGCGA	1 cut(s)	93
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	93
BspPI	GGATC	1 cut(s)	282
BssMI	GATC	2 cut(s)	41, 287
Bst4CI	ACNGT	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	44, 290
BstMBI	GATC	2 cut(s)	41, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	219
BtuMI	TCGCGA	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	44
CviAII	CATG	3 cut(s)	113, 145, 257
CviJI	RGCY	7 cut(s)	64, 161, 199, 214, 237, 277, 319
CviKI_1	RGCY	7 cut(s)	64, 161, 199, 214, 237, 277, 319
DpnI	GATC	2 cut(s)	43, 289
DpnII	GATC	2 cut(s)	41, 287
EaeI	YGGCCR	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	3 cut(s)	116, 148, 260
FaiI	YATR	5 cut(s)	99, 114, 146, 164, 258
FatI	CATG	3 cut(s)	112, 144, 256
Fnu4HI	GCNGC	2 cut(s)	62, 65
Fsp4HI	GCNGC	2 cut(s)	62, 65
FspBI	CTAG	2 cut(s)	204, 249
GluI	GCNGC	2 cut(s)	62, 65
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	116, 148, 260
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	89
Hpy188III	TCNNGA	3 cut(s)	50, 92, 204
HpyAV	CCTTC	3 cut(s)	47, 51, 210
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	11, 67, 84, 156, 256, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	116, 148, 260
Kzo9I	GATC	2 cut(s)	41, 287
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	204, 249
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	43, 289
MboI	GATC	2 cut(s)	41, 287
MboII	GAAGA	2 cut(s)	40, 278
MflI	RGATCY	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	2 cut(s)	269, 293
MluNI	TGGCCA	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	142, 291
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	2 cut(s)	20, 272
Msp20I	TGGCCA	1 cut(s)	237
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeII	GATC	2 cut(s)	41, 287
NlaIII	CATG	3 cut(s)	116, 148, 260
NmuCI	GTSAC	1 cut(s)	217
NruI	TCGCGA	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	63, 66
PsuI	RGATCY	1 cut(s)	287
RruI	TCGCGA	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	20, 272
SatI	GCNGC	2 cut(s)	62, 65
Sau3AI	GATC	2 cut(s)	41, 287
SetI	ASST	5 cut(s)	163, 216, 254, 279, 321
SfaNI	GCATC	1 cut(s)	20
Sse9I	AATT	2 cut(s)	269, 293
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	2 cut(s)	204, 249
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	44, 49
TasI	AATT	2 cut(s)	269, 293
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	20, 272
Tru9I	TTAA	2 cut(s)	20, 272
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	17, 133
TspRI	CASTG	1 cut(s)	226
XbaI	TCTAGA	1 cut(s)	203
XspI	CTAG	2 cut(s)	204, 249
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.