Rh1AG268500

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
49537365 .. 49538761
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG268500.1

Sequence Viewer

Length: 1194 bp
ATGGCTTCCTTCATCTCAGATCATCATTACAGCGATCCAGAGATTTTGGTACGAAAGAATAATCGATCTGTGACAACGTTGACACTCAACAGACCTCGAAAATTGAACGCGCTCTCAGTTTCCATGCTCTCGCGGCTGTCTGAACTGTTCCTCCGCTACGAGCACGATCCCCATGTCAAGTTGGTCATTCTCAAAGCTAACGGTAAGGCATTTTCACCGGGGGGCGACGTTGCGTCTGTAGCTCATCATCTCTACAATGGCAATTTGAGAGCTGCTTTCAAAAGTTTCGCAACTGCATACACCTTAATGTACTTGGTGGCAACAAAGACTACACCCCAGGTTTCATTTCTCAATGGAATGACCATGGGAACCGGGGCAGGTGTTTCAATACACGGTAGTTTTCGTGTGGCAACGGAGAAGACGGTGTTTGCCATGCCGGAAGCAGCTATCGGAGGGTTTCCTGATGTTGGTTCCTCTTATTTCCTATCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTTTTGCCTCAACGAAATTGGCTTCGGTAGAAGAAGCCCTAGTAAGAACTCTCGGTGCTTTTCCTAATACAAGCTCAAGTGATGACCATGCTTTTATTTCAGCCATTCTAGATGCATACTCTGAGCAACCAGCTCTGAAAGTGAACAGTGCTTACCACCGTATGGATGTTATTGACAAGTGCTTTTCTCAATCCACAGTGGAAGAGATTTTAAGTAGCCTTGAAAAGGAGTTTGCTACATTAACCAACATAAGTGATCATGATGAATGGTTATCTTCATCAATTCAGTCAATGAAAAATGCATCGCCATTAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGCGGCTGCAAGGAGTTGGTGAGTGCATTGTTCGCGAATATAGGATTATCTGTCATGTTTTGCGTGGGGAAATCAGCAAGGATTTCATGGAGGGTTGTAGAGCTATACTGTTGGACAAGGATAAGAACCCAAAGTGGAAGCCTTCTAGATTAGAGCTTGTCACTGACGAGATGGTTGGCCACTACTTCTCTAGGTTGCATGATGACGAAGAATTAAAGCTCCCTCAAAGATCCAAATTGTCTACAACTGCCATTTCCAAGCTTTGA

Protein Analysis

397

Amino Acids

43.9

Weight (kDa)

8.23

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 21 - 268 1.4e-24 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 25 - 372 1.6e-112 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 530
AccB7I CCANNNNNTGG 1 cut(s) 742
AccI GTMKAC 1 cut(s) 1169
AccII CGCG 3 cut(s) 110, 133, 963
AciI CCGC 3 cut(s) 133, 154, 931
AclI AACGTT 1 cut(s) 77
AclWI GGATC 3 cut(s) 29, 161, 1152
AcoI YGGCCR 1 cut(s) 1105
AfaI GTAC 2 cut(s) 51, 311
AfiI CCNNNNNNNGG 3 cut(s) 467, 742, 805
AgsI TTSAA 5 cut(s) 106, 280, 387, 803, 898
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 336, 496
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
Alw21I GWGCWC 1 cut(s) 165
AlwI GGATC 3 cut(s) 29, 161, 1152
AoxI GGCC 1 cut(s) 1105
ApeKI GCWGC 3 cut(s) 272, 443, 934
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 2 cut(s) 219, 373
AsuHPI GGTGA 2 cut(s) 207, 959
AvaII GGWCC 1 cut(s) 545
BalI TGGCCA 1 cut(s) 1107
BanI GGYRCC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 259, 455, 921
BccI CCATC 1 cut(s) 1093
BciT130I CCWGG 2 cut(s) 338, 498
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 2 cut(s) 219, 373
BfaI CTAG 5 cut(s) 569, 620, 689, 1074, 1119
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 5 cut(s) 134, 273, 444, 932, 935
BlsI GCNGC 5 cut(s) 135, 274, 445, 933, 936
Bme1390I CCNGG 4 cut(s) 219, 338, 373, 498
Bme18I GGWCC 1 cut(s) 545
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 3 cut(s) 370, 472, 532
BmrFI CCNGG 4 cut(s) 219, 338, 373, 498
BmsI GCATC 2 cut(s) 682, 890
BpiI GAAGAC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 2 cut(s) 219, 373
Bsa29I ATCGAT 2 cut(s) 64, 914
BsaJI CCNNGG 4 cut(s) 218, 336, 363, 372
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 742, 805
BseBI CCWGG 2 cut(s) 338, 498
BseCI ATCGAT 2 cut(s) 64, 914
BseDI CCNNGG 4 cut(s) 218, 336, 363, 372
BseGI GGATG 1 cut(s) 751
BseLI CCNNNNNNNGG 3 cut(s) 467, 742, 805
BseMII CTCAG 3 cut(s) 30, 129, 693
BseXI GCAGC 3 cut(s) 259, 455, 921
Bsh1236I CGCG 3 cut(s) 110, 133, 963
BshFI GGCC 1 cut(s) 1107
BshNI GGYRCC 1 cut(s) 530
BshVI ATCGAT 2 cut(s) 64, 914
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 218, 372, 437
BslI CCNNNNNNNGG 3 cut(s) 467, 742, 805
BsnI GGCC 1 cut(s) 1107
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
Bsp19I CCATGG 1 cut(s) 363
Bsp68I TCGCGA 1 cut(s) 963
BspACI CCGC 3 cut(s) 133, 154, 931
BspANI GGCC 1 cut(s) 1107
BspCNI CTCAG 3 cut(s) 29, 128, 694
BspDI ATCGAT 2 cut(s) 64, 914
BspFNI CGCG 3 cut(s) 110, 133, 963
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 3 cut(s) 370, 472, 532
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 3 cut(s) 29, 161, 1152
BspT107I GGYRCC 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 218, 336, 363, 372
BssMI GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 338, 498
Bst4CI ACNGT 9 cut(s) 147, 203, 395, 424, 545, 728, 740, 778, 1038
Bst6I CTCTTC 1 cut(s) 777
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 16, 115, 702
BstDSI CCRYGG 1 cut(s) 363
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 1 cut(s) 751
BstFNI CGCG 3 cut(s) 110, 133, 963
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 7 cut(s) 22, 37, 68, 169, 838, 914, 1160
BstMBI GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
BstMWI GCNNNNNNNGC 3 cut(s) 133, 239, 960
BstNI CCWGG 2 cut(s) 338, 498
BstSCI CCNGG 4 cut(s) 217, 336, 371, 496
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 3 cut(s) 110, 133, 963
BstV1I GCAGC 3 cut(s) 259, 455, 921
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 1157
BstYI RGATCY 1 cut(s) 1157
Bsu15I ATCGAT 2 cut(s) 64, 914
BsuRI GGCC 1 cut(s) 1107
BsuTUI ATCGAT 2 cut(s) 64, 914
BtgI CCRYGG 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 867
BtsCI GGATG 1 cut(s) 751
BtsIMutI CAGTG 3 cut(s) 733, 783, 1089
BtuMI TCGCGA 1 cut(s) 963
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 558
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 545
ClaI ATCGAT 2 cut(s) 64, 914
CseI GACGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 50, 310
CviAII CATG 9 cut(s) 124, 173, 364, 433, 668, 839, 983, 1015, 1127
CviQI GTAC 2 cut(s) 50, 310
DdeI CTNAG 3 cut(s) 16, 115, 702
DpnI GATC 7 cut(s) 21, 36, 67, 168, 837, 913, 1159
DpnII GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
DriI GACNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 1105
Eam1104I CTCTTC 1 cut(s) 777
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 545
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoRII CCWGG 2 cut(s) 336, 496
EcoT14I CCWWGG 1 cut(s) 363
EcoT22I ATGCAT 2 cut(s) 697, 883
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 9 cut(s) 127, 176, 367, 436, 671, 842, 986, 1018, 1130
FatI CATG 9 cut(s) 123, 172, 363, 432, 667, 838, 982, 1014, 1126
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 1 cut(s) 1169
Fnu4HI GCNGC 5 cut(s) 134, 273, 444, 932, 935
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 5 cut(s) 134, 273, 444, 932, 935
FspBI CTAG 5 cut(s) 569, 620, 689, 1074, 1119
GlaI GCGC 1 cut(s) 111
GluI GCNGC 5 cut(s) 134, 273, 444, 932, 935
HaeIII GGCC 1 cut(s) 1107
HapII CCGG 3 cut(s) 218, 372, 437
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 112
Hin1II CATG 9 cut(s) 127, 176, 367, 436, 671, 842, 986, 1018, 1130
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 1187
HinfI GANTC 2 cut(s) 501, 916
HpaII CCGG 3 cut(s) 218, 372, 437
HphI GGTGA 2 cut(s) 207, 959
Hpy166II GTNNAC 3 cut(s) 81, 724, 1170
Hpy188I TCNGA 5 cut(s) 19, 142, 452, 703, 717
Hpy188III TCNNGA 9 cut(s) 38, 461, 489, 548, 689, 839, 920, 962, 1074
Hpy8I GTNNAC 3 cut(s) 81, 724, 1170
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 4 cut(s) 19, 917, 921, 1080
HpyCH4III ACNGT 9 cut(s) 147, 203, 395, 424, 545, 728, 740, 778, 1038
HpyCH4IV ACGT 2 cut(s) 77, 228
HpyCH4V TGCA 6 cut(s) 296, 695, 881, 937, 954, 1126
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 239, 960
HpyF3I CTNAG 3 cut(s) 16, 115, 702
HpySE526I ACGT 2 cut(s) 77, 228
Hsp92II CATG 9 cut(s) 127, 176, 367, 436, 671, 842, 986, 1018, 1130
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
LmnI GCTCC 1 cut(s) 1152
Lsp1109I GCAGC 3 cut(s) 259, 455, 921
LweI GCATC 2 cut(s) 682, 890
MaeI CTAG 5 cut(s) 569, 620, 689, 1074, 1119
MaeII ACGT 2 cut(s) 77, 228
MaeIII GTNAC 2 cut(s) 70, 1087
MalI GATC 7 cut(s) 21, 36, 67, 168, 837, 913, 1159
MboI GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
MboII GAAGA 6 cut(s) 430, 623, 794, 846, 910, 1148
MflI RGATCY 1 cut(s) 1157
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 1107
MluCI AATT 6 cut(s) 101, 262, 596, 861, 1139, 1163
MluNI TGGCCA 1 cut(s) 1107
MmeI TCCRAC 1 cut(s) 1020
MnlI CCTC 7 cut(s) 105, 161, 446, 484, 598, 1012, 1161
Mox20I TGGCCA 1 cut(s) 1107
Mph1103I ATGCAT 2 cut(s) 697, 883
MscI TGGCCA 1 cut(s) 1107
MseI TTAA 5 cut(s) 305, 791, 821, 890, 1142
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 1107
MspI CCGG 3 cut(s) 218, 372, 437
MspR9I CCNGG 4 cut(s) 219, 338, 373, 498
MvaI CCWGG 2 cut(s) 338, 498
MvnI CGCG 3 cut(s) 110, 133, 963
MwoI GCNNNNNNNGC 3 cut(s) 133, 239, 960
NciI CCSGG 2 cut(s) 219, 373
NcoI CCATGG 1 cut(s) 363
NdeII GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
NlaIII CATG 9 cut(s) 127, 176, 367, 436, 671, 842, 986, 1018, 1130
NlaIV GGNNCC 3 cut(s) 370, 472, 532
NmuCI GTSAC 2 cut(s) 70, 1087
NruI TCGCGA 1 cut(s) 963
NsiI ATGCAT 2 cut(s) 697, 883
PagI TCATGA 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 501, 916
PflMI CCANNNNNTGG 1 cut(s) 742
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 5 cut(s) 135, 274, 445, 933, 936
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 336, 496
PspGI CCWGG 2 cut(s) 336, 496
PspN4I GGNNCC 3 cut(s) 370, 472, 532
PspPI GGNCC 1 cut(s) 545
PsrI GAACNNNNNNTAC 2 cut(s) 716, 748
PsuI RGATCY 1 cut(s) 1157
RruI TCGCGA 1 cut(s) 963
RsaI GTAC 2 cut(s) 51, 311
RsaNI GTAC 2 cut(s) 50, 310
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 5 cut(s) 305, 791, 821, 890, 1142
SatI GCNGC 5 cut(s) 134, 273, 444, 932, 935
Sau3AI GATC 7 cut(s) 19, 34, 65, 166, 835, 911, 1157
Sau96I GGNCC 1 cut(s) 545
ScrFI CCNGG 4 cut(s) 219, 338, 373, 498
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 2 cut(s) 682, 890
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 6 cut(s) 101, 262, 596, 861, 1139, 1163
SsiI CCGC 3 cut(s) 133, 154, 931
SspMI CTAG 5 cut(s) 569, 620, 689, 1074, 1119
StyD4I CCNGG 4 cut(s) 217, 336, 371, 496
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 9 cut(s) 147, 203, 395, 424, 545, 728, 740, 778, 1038
TaiI ACGT 2 cut(s) 80, 231
TaqI TCGA 4 cut(s) 64, 97, 914, 919
TasI AATT 6 cut(s) 101, 262, 596, 861, 1139, 1163
TatI WGTACW 1 cut(s) 309
TauI GCSGC 2 cut(s) 136, 934
TfiI GAWTC 2 cut(s) 501, 916
Tru1I TTAA 5 cut(s) 305, 791, 821, 890, 1142
Tru9I TTAA 5 cut(s) 305, 791, 821, 890, 1142
TscAI CASTG 3 cut(s) 733, 783, 1096
TseFI GTSAC 2 cut(s) 70, 1087
TseI GCWGC 3 cut(s) 272, 443, 934
Tsp45I GTSAC 2 cut(s) 70, 1087
TspDTI ATGAA 5 cut(s) 333, 846, 858, 887, 1003
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 3 cut(s) 733, 783, 1096
Van91I CCANNNNNTGG 1 cut(s) 742
VpaK11BI GGWCC 1 cut(s) 545
XagI CCTNNNNNAGG 1 cut(s) 803
XbaI TCTAGA 2 cut(s) 688, 1073
XmiI GTMKAC 1 cut(s) 1169
XspI CTAG 5 cut(s) 569, 620, 689, 1074, 1119
Zsp2I ATGCAT 2 cut(s) 697, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.