Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

49522691 .. 49523865

Gene Structure 1175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58242

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTATTTCCTAGCAACAAAAACTACACAGCAGGTTTCATTTCTTAATGGAATCACTATGGGGACCGGGGCAGGTATTTCTATACACGGTAGCTTTCGTGTAGCAACGGAGAAGACAGTGTTTGCTATGCCGGAAACAGCTATTGGAGGGTTTCCTGATGTTGGTTCTTCTTACTACCTTTCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCTAGATTGGATGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTATGTCCCTTCATCTAAATTGCTTTTTCTAGAAGAAGCCTTGATAAGAAAACTAGGCGCTTCTTCAACTAATACAAGGTCAATTGATGATTATGCTACTATTTCAGCTATTCTAGATGAATACTCTGAGCAACCAGTTCCAAAAACGAAGAGTGCTTACCACTGTATGGATGTTATTGACAAGTGTTTTTCTCAATCAACAGTGGAAGAAATATTAAGTAGCCTAGAGGAGGAGCTTGCTACCATAATCAACATAAATGATCACCATGAATGGTTATCGTCAGCAATTCAATCACTAAGACAGGCATCACCAACAAGTTTGAAGATTGCTTTAAGATCGATTCGAGGAGGAAAGCGACTTCAAGAAGTTGGTGAGTGTATTATTAGCGAATATAGAATTATTTATCATATTTTGCGTGGGGAAATCAACAAGGACTTCATGGAGGGTTGCAGAGCTATGCTATTGGACAAAGATAAGAACCCAAAGTGGAAGCCTTCTAAATTGGAGCTTGTCACGAACCAGATGGTTGAGCACTACTTCTCTAGGTTGGATGATGACGAAGAATTAAAGCTCCCTCAAACATTCAATTTGTCTGTCACTGCCATCTCCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

296

Amino Acids

32.98

Weight (kDa)

5.58

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	2 - 271	7.1e-87	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	12 - 114	3.3e-08	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	22, 62
AccB7I	CCANNNNNTGG	1 cut(s)	439
AfiI	CCNNNNNNNGG	3 cut(s)	161, 439, 502
AgsI	TTSAA	6 cut(s)	183, 339, 563, 595, 635, 859
AjnI	CCWGG	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	7 cut(s)	93, 140, 380, 508, 728, 781, 844
AluI	AGCT	7 cut(s)	93, 140, 380, 508, 728, 781, 844
Alw21I	GWGCWC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	63, 239
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	527, 573, 656
AvaII	GGWCC	2 cut(s)	63, 239
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	807
BccI	CCATC	3 cut(s)	230, 790, 884
BciT130I	CCWGG	1 cut(s)	192
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	67
BfaI	CTAG	8 cut(s)	11, 228, 263, 302, 326, 386, 497, 816
BfoI	RGCGCY	1 cut(s)	333
BfuAI	ACCTGC	2 cut(s)	22, 62
Bme1390I	CCNGG	2 cut(s)	67, 192
Bme18I	GGWCC	2 cut(s)	63, 239
BmgT120I	GGNCC	2 cut(s)	63, 239
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	67, 192
BmsI	GCATC	1 cut(s)	587
BpiI	GAAGAC	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	67
Bsa29I	ATCGAT	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 439, 502
Bse1I	ACTGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	241, 448, 829
BseLI	CCNNNNNNNGG	3 cut(s)	161, 439, 502
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	3 cut(s)	515, 518, 633
BshVI	ATCGAT	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	2 cut(s)	66, 131
BslFI	GGGAC	2 cut(s)	76, 263
BslI	CCNNNNNNNGG	3 cut(s)	161, 439, 502
BsmFI	GGGAC	2 cut(s)	76, 263
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	2 cut(s)	532, 608
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	611
BspLI	GGNNCC	1 cut(s)	64
BspMI	ACCTGC	2 cut(s)	22, 62
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	532, 608
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	89, 118, 437, 475
Bst6I	CTCTTC	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	252, 510
BstDEI	CTNAG	2 cut(s)	399, 569
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	3 cut(s)	241, 448, 829
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	2 cut(s)	535, 611
BstMBI	GATC	2 cut(s)	532, 608
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	65, 190
BstV2I	GAAGAC	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	611
BsuTUI	ATCGAT	1 cut(s)	611
BtsCI	GGATG	3 cut(s)	241, 448, 829
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	4 cut(s)	123, 433, 480, 870
BveI	ACCTGC	2 cut(s)	22, 62
Cac8I	GCNNGC	2 cut(s)	252, 510
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	63, 239
ClaI	ATCGAT	1 cut(s)	611
CviAII	CATG	2 cut(s)	539, 712
DdeI	CTNAG	2 cut(s)	399, 569
DpnI	GATC	2 cut(s)	534, 610
DpnII	GATC	2 cut(s)	532, 608
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	63, 239
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	542, 715
FaqI	GGGAC	2 cut(s)	76, 263
FatI	CATG	2 cut(s)	538, 711
FbaI	TGATCA	1 cut(s)	532
FokI	GGATG	3 cut(s)	248, 455, 836
FspBI	CTAG	8 cut(s)	11, 228, 263, 302, 326, 386, 497, 816
GlaI	GCGC	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	333
HapII	CCGG	2 cut(s)	66, 131
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	542, 715
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	3 cut(s)	51, 195, 613
HpaII	CCGG	2 cut(s)	66, 131
HphI	GGTGA	3 cut(s)	527, 573, 656
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	7 cut(s)	155, 183, 242, 302, 386, 635, 787
HpyAV	CCTTC	2 cut(s)	291, 777
HpyCH4III	ACNGT	4 cut(s)	89, 118, 437, 475
HpyCH4V	TGCA	1 cut(s)	723
HpyF3I	CTNAG	2 cut(s)	399, 569
Hsp92II	CATG	2 cut(s)	542, 715
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	532, 608
LmnI	GCTCC	3 cut(s)	505, 778, 849
LweI	GCATC	1 cut(s)	587
MaeI	CTAG	8 cut(s)	11, 228, 263, 302, 326, 386, 497, 816
MaeIII	GTNAC	2 cut(s)	784, 868
MalI	GATC	2 cut(s)	534, 610
MboI	GATC	2 cut(s)	532, 608
MboII	GAAGA	8 cut(s)	124, 159, 317, 327, 433, 491, 607, 845
MfeI	CAATTG	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	807
MluCI	AATT	7 cut(s)	290, 354, 558, 669, 773, 836, 859
MmeI	TCCRAC	1 cut(s)	801
MnlI	CCTC	7 cut(s)	140, 493, 496, 611, 614, 709, 858
MseI	TTAA	4 cut(s)	45, 488, 605, 839
MspI	CCGG	2 cut(s)	66, 131
MspR9I	CCNGG	2 cut(s)	67, 192
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	192
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	532, 608
NlaIII	CATG	2 cut(s)	542, 715
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	784, 868
PfeI	GAWTC	3 cut(s)	51, 195, 613
PflMI	CCANNNNNTGG	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	63, 239
SaqAI	TTAA	4 cut(s)	45, 488, 605, 839
Sau3AI	GATC	2 cut(s)	532, 608
Sau96I	GGNCC	2 cut(s)	63, 239
ScrFI	CCNGG	2 cut(s)	67, 192
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	1 cut(s)	587
SinI	GGWCC	2 cut(s)	63, 239
Sse9I	AATT	7 cut(s)	290, 354, 558, 669, 773, 836, 859
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	8 cut(s)	11, 228, 263, 302, 326, 386, 497, 816
StyD4I	CCNGG	2 cut(s)	65, 190
TaaI	ACNGT	4 cut(s)	89, 118, 437, 475
TaqI	TCGA	2 cut(s)	611, 616
TasI	AATT	7 cut(s)	290, 354, 558, 669, 773, 836, 859
TfiI	GAWTC	3 cut(s)	51, 195, 613
Tru1I	TTAA	4 cut(s)	45, 488, 605, 839
Tru9I	TTAA	4 cut(s)	45, 488, 605, 839
TscAI	CASTG	4 cut(s)	123, 440, 480, 877
TseFI	GTSAC	2 cut(s)	784, 868
Tsp45I	GTSAC	2 cut(s)	784, 868
TspDTI	ATGAA	5 cut(s)	27, 273, 405, 555, 700
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	4 cut(s)	123, 440, 480, 877
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	63, 239
XagI	CCTNNNNNAGG	1 cut(s)	500
XbaI	TCTAGA	2 cut(s)	301, 385
XspI	CTAG	8 cut(s)	11, 228, 263, 302, 326, 386, 497, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.