Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

8694812 .. 8695697

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATGATCGAGTCTCTATTCGCTTGCTTCAATCCTCGATGCAATACGAGCAAGCTTAGGCTGCTAAAGAGAAAAAAACTCCCAAAGAAATTAGAGAGAGAGCAGAAGGAGAATGAAGATGATAACAACAAGTACGTAAGCTTTGCCAGCGTGTCAGAGGGGAGAGTTGTCAAGTTGAAGCTACCTAAGCAAGTTCGTGGATGGTGGATTTATGGGTCTTCTAAAGGTTGGTTGATCATGATCAAGGAAAGAGGTCTAAATTCCAAGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACTCCAACTTCCACCCTTGAGAACACTTCCTTTTCTGAAAGATTTTGTGAAAACCGAGGCCTGGAAACTTTTTGGTGCCAACGCATTCGACTTAAGCATTGCACTATCAACCTCTGATGGAATTGCTTTAGATTCAAAGCGTTGTACGGTAGCAGCAGTTTTTAATGATAAGTCGAAATTGAGTTTGTGCAGACCTGGAGACAGAACATGGAGTGACTTTCAAGTATTAGATACTAATCAAAACGACTGGATTGCTGATTTATTGTTTTCTTCCGGCAGTCTATATGTTTTGGTTCGTGGTGGTCAAAAGGAAAGCTTTGTAGACTCAGTTACTCAAACCTTGAACTTTAGCTTTGGAGATGCAGAAAATTTGAAAATGAAGTTGGTCTACGACAAGCATGAAAACAGGAACGTGAACGTTAATGAATGTCATAGTGACTATAAGATCGTTTACAATGCATTATACTTCTCAAGATTGTTAGAATCAACCGGCCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

266

Amino Acids

30.36

Weight (kDa)

9.27

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	48 - 206	2.1e-20	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AccI	GTMKAC	3 cut(s)	274, 621, 687
AclI	AACGTT	1 cut(s)	717
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	2 cut(s)	259, 667
AfaI	GTAC	2 cut(s)	134, 445
AfiI	CCNNNNNNNGG	2 cut(s)	290, 360
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	6 cut(s)	31, 178, 435, 521, 643, 673
AjnI	CCWGG	2 cut(s)	359, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	5 cut(s)	55, 141, 181, 615, 651
AluI	AGCT	5 cut(s)	55, 141, 181, 615, 651
Alw26I	GTCTC	2 cut(s)	18, 492
AoxI	GGCC	2 cut(s)	357, 790
ApeKI	GCWGC	2 cut(s)	61, 452
ApoI	RAATTY	2 cut(s)	259, 667
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	48, 464
BccI	CCATC	2 cut(s)	195, 410
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	2 cut(s)	361, 495
BclI	TGATCA	2 cut(s)	234, 240
BcoDI	GTCTC	2 cut(s)	18, 492
BfrI	CTTAAG	1 cut(s)	391
BisI	GCNGC	2 cut(s)	62, 453
BlsI	GCNGC	2 cut(s)	63, 454
Bme1390I	CCNGG	2 cut(s)	361, 495
BmiI	GGNNCC	2 cut(s)	295, 376
BmrFI	CCNGG	2 cut(s)	361, 495
BmsI	GCATC	2 cut(s)	29, 649
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	2 cut(s)	56, 186
BpuEI	CTTGAG	2 cut(s)	337, 754
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	2 cut(s)	239, 534
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 360
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	1 cut(s)	396
Bse8I	GATNNNNATC	2 cut(s)	239, 534
BseBI	CCWGG	2 cut(s)	361, 495
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	206
BseJI	GATNNNNATC	2 cut(s)	239, 534
BseLI	CCNNNNNNNGG	2 cut(s)	290, 360
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	48, 464
BsgI	GTGCAG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	359, 792
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	573, 789
BslI	CCNNNNNNNGG	2 cut(s)	290, 360
BsmAI	GTCTC	2 cut(s)	18, 492
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	359, 792
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	6, 234, 240, 744
BspANI	GGCC	2 cut(s)	359, 792
BspCNI	CTCAG	1 cut(s)	638
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	295, 376
BspT107I	GGYRCC	1 cut(s)	374
BspTI	CTTAAG	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	4 cut(s)	6, 234, 240, 744
Bst2UI	CCWGG	2 cut(s)	361, 495
Bst4CI	ACNGT	1 cut(s)	448
BstAFI	CTTAAG	1 cut(s)	391
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	4 cut(s)	25, 53, 148, 794
BstDEI	CTNAG	3 cut(s)	56, 186, 625
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	4 cut(s)	9, 237, 243, 747
BstMAI	GTCTC	2 cut(s)	18, 492
BstMBI	GATC	4 cut(s)	6, 234, 240, 744
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 61, 147, 187
BstNI	CCWGG	2 cut(s)	361, 495
BstSCI	CCNGG	2 cut(s)	359, 493
BstSNI	TACGTA	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	48, 464
BstV2I	GAAGAC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	359, 792
BtsCI	GGATG	1 cut(s)	206
Cac8I	GCNNGC	4 cut(s)	25, 53, 148, 794
CciI	TCATGA	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	133, 444
CviAII	CATG	3 cut(s)	238, 507, 698
CviJI	RGCY	9 cut(s)	55, 61, 141, 181, 296, 359, 615, 651, 792
CviKI_1	RGCY	9 cut(s)	55, 61, 141, 181, 296, 359, 615, 651, 792
CviQI	GTAC	2 cut(s)	133, 444
DdeI	CTNAG	3 cut(s)	56, 186, 625
DpnI	GATC	4 cut(s)	8, 236, 242, 746
DpnII	GATC	4 cut(s)	6, 234, 240, 744
EaeI	YGGCCR	1 cut(s)	790
Eco105I	TACGTA	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	359, 493
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	3 cut(s)	241, 510, 701
FaiI	YATR	9 cut(s)	213, 239, 508, 583, 585, 699, 732, 741, 763
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FatI	CATG	3 cut(s)	237, 506, 697
FbaI	TGATCA	2 cut(s)	234, 240
FblI	GTMKAC	3 cut(s)	274, 621, 687
Fnu4HI	GCNGC	2 cut(s)	62, 453
FokI	GGATG	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	62, 453
GluI	GCNGC	2 cut(s)	62, 453
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	359, 792
HapII	CCGG	2 cut(s)	573, 789
Hin1II	CATG	3 cut(s)	241, 510, 701
HindIII	AAGCTT	3 cut(s)	53, 139, 613
HinfI	GANTC	4 cut(s)	11, 431, 623, 782
HpaII	CCGG	2 cut(s)	573, 789
Hpy166II	GTNNAC	5 cut(s)	275, 622, 688, 715, 751
Hpy188I	TCNGA	3 cut(s)	157, 336, 415
Hpy188III	TCNNGA	3 cut(s)	238, 291, 771
Hpy8I	GTNNAC	5 cut(s)	275, 622, 688, 715, 751
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	3 cut(s)	135, 711, 717
HpyCH4V	TGCA	5 cut(s)	42, 401, 489, 662, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 61, 147, 187
HpyF3I	CTNAG	3 cut(s)	56, 186, 625
HpySE526I	ACGT	3 cut(s)	135, 711, 717
Hsp92II	CATG	3 cut(s)	241, 510, 701
Ksp22I	TGATCA	2 cut(s)	234, 240
Kzo9I	GATC	4 cut(s)	6, 234, 240, 744
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	9 cut(s)	160, 276, 346, 373, 480, 507, 532, 586, 691
Lsp1109I	GCAGC	2 cut(s)	48, 464
LweI	GCATC	2 cut(s)	29, 649
MaeII	ACGT	3 cut(s)	135, 711, 717
MaeIII	GTNAC	3 cut(s)	512, 628, 734
MalI	GATC	4 cut(s)	8, 236, 242, 746
MboI	GATC	4 cut(s)	6, 234, 240, 744
MboII	GAAGA	3 cut(s)	128, 210, 561
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	6 cut(s)	89, 259, 285, 420, 476, 667
MlyI	GAGTC	2 cut(s)	20, 617
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	5 cut(s)	45, 151, 245, 349, 421
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	4 cut(s)	279, 392, 462, 720
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	2 cut(s)	573, 789
MspR9I	CCNGG	2 cut(s)	361, 495
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	2 cut(s)	361, 495
MwoI	GCNNNNNNNGC	4 cut(s)	48, 61, 147, 187
NdeII	GATC	4 cut(s)	6, 234, 240, 744
NlaIII	CATG	3 cut(s)	241, 510, 701
NlaIV	GGNNCC	2 cut(s)	295, 376
NmuCI	GTSAC	2 cut(s)	512, 734
NsiI	ATGCAT	1 cut(s)	760
PagI	TCATGA	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	359
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	431, 782
PkrI	GCNGC	2 cut(s)	63, 454
PleI	GAGTC	2 cut(s)	19, 617
PpsI	GAGTC	2 cut(s)	19, 617
Ppu21I	YACGTR	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	359, 493
PspGI	CCWGG	2 cut(s)	359, 493
PspN4I	GGNNCC	2 cut(s)	295, 376
RsaI	GTAC	2 cut(s)	134, 445
RsaNI	GTAC	2 cut(s)	133, 444
SaqAI	TTAA	4 cut(s)	279, 392, 462, 720
SatI	GCNGC	2 cut(s)	62, 453
Sau3AI	GATC	4 cut(s)	6, 234, 240, 744
SchI	GAGTC	2 cut(s)	20, 617
ScrFI	CCNGG	2 cut(s)	361, 495
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	29, 649
SmlI	CTYRAG	3 cut(s)	316, 391, 769
SmoI	CTYRAG	3 cut(s)	316, 391, 769
SnaBI	TACGTA	1 cut(s)	136
Sse9I	AATT	6 cut(s)	89, 259, 285, 420, 476, 667
SseBI	AGGCCT	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	359, 493
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	3 cut(s)	138, 714, 720
TaqI	TCGA	4 cut(s)	9, 37, 387, 473
TasI	AATT	6 cut(s)	89, 259, 285, 420, 476, 667
TfiI	GAWTC	2 cut(s)	431, 782
Tru1I	TTAA	4 cut(s)	279, 392, 462, 720
Tru9I	TTAA	4 cut(s)	279, 392, 462, 720
TseFI	GTSAC	2 cut(s)	512, 734
TseI	GCWGC	2 cut(s)	61, 452
Tsp45I	GTSAC	2 cut(s)	512, 734
TspDTI	ATGAA	4 cut(s)	129, 692, 714, 738
Vha464I	CTTAAG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	259, 667
XmiI	GTMKAC	3 cut(s)	274, 621, 687
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.