Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

18978795 .. 18979865

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTCTCGCAGCTGTCTGAACTGTTCCTCCGCTACGAGCATGATCCCTATGTCAAGTTGATCATTCTTAAAGCTAACGGTAAGGCATTTTCACCGGGGGGTGACGTTGCGTCTGTAGCTCATCATCTCTACAATGGCAATTTGAGAGCTGCTTTCAAAAGTTTCGCAACTGCATACACCTTAATGTACTTAGTGGCAACAAAGACTACACCCCAGGTTTCATTTCTCAATGGAATGACCATGGGGACCGGGGCAGGTGTTTCAATACACGGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTTTTCCCTCATCGAAATTGGCTTCGGTAGAAGAAGCCCTAGCGTCGCCATTAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGAGGCTGCAAGGAGTTGGTGAGTGCATTGTTCGCGAATATAGGATTATTTGTCATGTTTTGCGTGGGGAAATCAGCAAGGATTTCATGGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAAGAACCCAAAATGGAAGCCTCCTAGATTAGAGCTTGTCACTGACCAGATGGTTGGCCACTACTTCTCTAGGTTGCATGATGACGAAGAATTAAAGCTCCCTCAAAGATCCAAATTGTCTGCAACTGCCATTTCCAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

225

Amino Acids

24.91

Weight (kDa)

9.34

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	1 - 91	3e-21	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	3 - 88	5.2e-06	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	122 - 200	1.2e-21	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	447
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	38, 636
AcoI	YGGCCR	1 cut(s)	589
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	157, 264, 382
AhdI	GACNNNNNGTC	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	213
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	8 cut(s)	13, 74, 119, 149, 515, 568, 631, 673
AluI	AGCT	8 cut(s)	13, 74, 119, 149, 515, 568, 631, 673
AlwI	GGATC	2 cut(s)	38, 636
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	3 cut(s)	10, 149, 418
AspS9I	GGNCC	2 cut(s)	246, 287
AsuC2I	CCSGG	2 cut(s)	96, 250
AsuHPI	GGTGA	3 cut(s)	84, 113, 443
AvaII	GGWCC	2 cut(s)	246, 287
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	22, 136, 405
BccI	CCATC	1 cut(s)	577
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	96, 250
BfaI	CTAG	4 cut(s)	311, 362, 558, 603
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	11, 150, 419
BlsI	GCNGC	3 cut(s)	12, 151, 420
Bme1390I	CCNGG	3 cut(s)	96, 215, 250
Bme18I	GGWCC	2 cut(s)	246, 287
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	246, 287
BmiI	GGNNCC	2 cut(s)	247, 274
BmrFI	CCNGG	3 cut(s)	96, 215, 250
BpuMI	CCSGG	2 cut(s)	96, 250
Bsa29I	ATCGAT	1 cut(s)	398
BsaJI	CCNNGG	4 cut(s)	95, 213, 240, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	4 cut(s)	95, 213, 240, 249
BseXI	GCAGC	3 cut(s)	22, 136, 405
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	591
BshNI	GGYRCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	95, 249
BslFI	GGGAC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	591
Bsp143I	GATC	4 cut(s)	43, 60, 395, 641
Bsp19I	CCATGG	1 cut(s)	240
Bsp68I	TCGCGA	1 cut(s)	447
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	591
BspDI	ATCGAT	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	247, 274
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	38, 636
BspT107I	GGYRCC	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	95, 213, 240, 249
BssMI	GATC	4 cut(s)	43, 60, 395, 641
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	4 cut(s)	24, 80, 272, 287
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	4 cut(s)	46, 63, 398, 644
BstMBI	GATC	4 cut(s)	43, 60, 395, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 116, 444
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	3 cut(s)	94, 213, 248
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	22, 136, 405
BstX2I	RGATCY	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	591
BsuTUI	ATCGAT	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	573
BtuMI	TCGCGA	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	246, 287
ClaI	ATCGAT	1 cut(s)	398
CseI	GACGC	2 cut(s)	99, 354
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	5 cut(s)	41, 241, 467, 499, 611
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	4 cut(s)	45, 62, 397, 643
DpnII	GATC	4 cut(s)	43, 60, 395, 641
DriI	GACNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	589
Eam1105I	GACNNNNNGTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	246, 287
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	5 cut(s)	44, 244, 470, 502, 614
FaiI	YATR	9 cut(s)	42, 51, 175, 242, 453, 468, 500, 518, 612
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	5 cut(s)	40, 240, 466, 498, 610
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	11, 150, 419
Fsp4HI	GCNGC	3 cut(s)	11, 150, 419
FspBI	CTAG	4 cut(s)	311, 362, 558, 603
GluI	GCNGC	3 cut(s)	11, 150, 419
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	2 cut(s)	95, 249
HgaI	GACGC	2 cut(s)	99, 354
Hin1II	CATG	5 cut(s)	44, 244, 470, 502, 614
HinfI	GANTC	1 cut(s)	400
HpaII	CCGG	2 cut(s)	95, 249
HphI	GGTGA	3 cut(s)	84, 113, 443
Hpy188I	TCNGA	2 cut(s)	19, 677
Hpy188III	TCNNGA	3 cut(s)	290, 404, 446
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	401, 405
HpyCH4III	ACNGT	4 cut(s)	24, 80, 272, 287
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	6 cut(s)	173, 421, 438, 510, 610, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 116, 444
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	5 cut(s)	44, 244, 470, 502, 614
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	43, 60, 395, 641
LmnI	GCTCC	1 cut(s)	636
LpnPI	CCDG	8 cut(s)	108, 200, 227, 240, 262, 289, 303, 593
Lsp1109I	GCAGC	3 cut(s)	22, 136, 405
MaeI	CTAG	4 cut(s)	311, 362, 558, 603
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	101, 571
MalI	GATC	4 cut(s)	45, 62, 397, 643
MboI	GATC	4 cut(s)	43, 60, 395, 641
MboII	GAAGA	3 cut(s)	365, 394, 632
MflI	RGATCY	1 cut(s)	641
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	4 cut(s)	139, 338, 623, 647
MluNI	TGGCCA	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	6 cut(s)	38, 340, 408, 496, 564, 645
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	4 cut(s)	69, 182, 374, 626
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	95, 249
MspR9I	CCNGG	3 cut(s)	96, 215, 250
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	10, 116, 444
NciI	CCSGG	2 cut(s)	96, 250
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	43, 60, 395, 641
NlaIII	CATG	5 cut(s)	44, 244, 470, 502, 614
NlaIV	GGNNCC	2 cut(s)	247, 274
NmuCI	GTSAC	2 cut(s)	101, 571
NruI	TCGCGA	1 cut(s)	447
PaqCI	CACCTGC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	12, 151, 420
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	247, 274
PspPI	GGNCC	2 cut(s)	246, 287
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	447
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	69, 182, 374, 626
SatI	GCNGC	3 cut(s)	11, 150, 419
Sau3AI	GATC	4 cut(s)	43, 60, 395, 641
Sau96I	GGNCC	2 cut(s)	246, 287
ScrFI	CCNGG	3 cut(s)	96, 215, 250
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	246, 287
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	139, 338, 623, 647
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	4 cut(s)	311, 362, 558, 603
StyD4I	CCNGG	3 cut(s)	94, 213, 248
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	24, 80, 272, 287
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	335, 398, 403
TasI	AATT	4 cut(s)	139, 338, 623, 647
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	4 cut(s)	69, 182, 374, 626
Tru9I	TTAA	4 cut(s)	69, 182, 374, 626
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	2 cut(s)	101, 571
TseI	GCWGC	3 cut(s)	10, 149, 418
Tsp45I	GTSAC	2 cut(s)	101, 571
TspDTI	ATGAA	2 cut(s)	210, 487
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	246, 287
XspI	CTAG	4 cut(s)	311, 362, 558, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.