RLG00000028052

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
18110336 .. 18112572
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028052

Sequence Viewer

Length: 1071 bp
ATGCTCGCGCGGCTATCTGAACTGTTCCTTAGCTACGAGCATGATCCCTGTGTCAAATTGGTCATTCTCAAAGCTAACGGTAAGGCATTTTCGCCGGGAGGCGACGTTGCATCTGTAGCTCATCATCTCTACAATGGAAATTTGAGAGCTGCTTTCAAAAGTTTCGCAACTGCATACACTTTGATGTACTTGGTGGCAACAAAGACTACACCCCAGGTTTCATTTCTCAATGGAATGACCATGGGGACCGGGGCAGGTGTTTCAATACACGGTAACTTTTGTGTGGCAACGGAGAAGACGGTGTTTGCCATGCCAGAAGTAGCTATCGGAGGGTTTCCTGATGTTGGTTCCTCTTATTTCCTATCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTTTTCCCTCATCGAAATTGGCTTCTGTAGAAGAAGCCCTAGTAAGAACTCTTGGTGCTTTTCCTAATACAGGCTCAAGTGATGACCATGCTTTTATTTCAGCCATTCTAGATGCATACTCTGAGCAACCAACTCTGAAAGTGAACAGTGCTTGCCACGGTATGGATGTCATTGACAAGTGCTTTTCTCAATCCACAGTGGAAGAGATTTTAAGTAGCCTTGAAATGGAGTTTGCTACATTAACCAACATAAGTGATCATCATGAATGGTTATCTTCATCAATTCAGTCAATGAAAAATGCATCGCCATTAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGACGCTGCAAGGAGTTGGTGAGTGCATTGTCCGCGAATATAGGATTATTTGTCATGTTTTGCGTGGGGAAATCAGCAAGGATTTCATGGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAAGAACCCAAAGTGGAAGCCTTCTAGATTAGAGCTTGTCACTGACGAGATGGTTGGCCACTACTTCTCTAGGTTGCATGATGACGAAGAATTAAAGCTCCCTCAAAGATCCAAATTGTCTGCAACTGCCATTTCCAAGCTTTGA

Protein Analysis

357

Amino Acids

38.91

Weight (kDa)

6.18

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 1 - 331 1.7e-101 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 5 - 170 2.8e-16 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 619
AccII CGCG 3 cut(s) 8, 10, 840
AciI CCGC 2 cut(s) 10, 838
AclWI GGATC 2 cut(s) 38, 1029
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 4 cut(s) 344, 527, 619, 682
AgsI TTSAA 4 cut(s) 157, 264, 680, 775
AjnI CCWGG 2 cut(s) 213, 373
AluBI AGCT 9 cut(s) 33, 74, 119, 149, 323, 908, 961, 1024, 1066
AluI AGCT 9 cut(s) 33, 74, 119, 149, 323, 908, 961, 1024, 1066
AlwI GGATC 2 cut(s) 38, 1029
AoxI GGCC 1 cut(s) 982
ApeKI GCWGC 2 cut(s) 149, 811
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 246, 422
AsuC2I CCSGG 2 cut(s) 96, 250
AsuHPI GGTGA 1 cut(s) 836
AvaII GGWCC 2 cut(s) 246, 422
BalI TGGCCA 1 cut(s) 984
BanI GGYRCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 136, 798
BccI CCATC 1 cut(s) 970
BciT130I CCWGG 2 cut(s) 215, 375
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 2 cut(s) 96, 250
BfaI CTAG 5 cut(s) 446, 497, 566, 951, 996
BfmI CTRYAG 2 cut(s) 114, 483
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 3 cut(s) 11, 150, 812
BlsI GCNGC 3 cut(s) 12, 151, 813
Bme1390I CCNGG 4 cut(s) 96, 215, 250, 375
Bme18I GGWCC 2 cut(s) 246, 422
BmgT120I GGNCC 2 cut(s) 246, 422
BmiI GGNNCC 3 cut(s) 247, 349, 409
BmrFI CCNGG 4 cut(s) 96, 215, 250, 375
BmsI GCATC 3 cut(s) 119, 559, 767
BpiI GAAGAC 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 2 cut(s) 96, 250
Bsa29I ATCGAT 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 213, 240, 249, 613
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 4 cut(s) 344, 527, 619, 682
BseBI CCWGG 2 cut(s) 215, 375
BseCI ATCGAT 1 cut(s) 791
BseDI CCNNGG 4 cut(s) 213, 240, 249, 613
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 4 cut(s) 344, 527, 619, 682
BseMII CTCAG 1 cut(s) 570
BseXI GCAGC 2 cut(s) 136, 798
Bsh1236I CGCG 3 cut(s) 8, 10, 840
BshFI GGCC 1 cut(s) 984
BshNI GGYRCC 1 cut(s) 407
BshVI ATCGAT 1 cut(s) 791
BsiSI CCGG 2 cut(s) 95, 249
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 4 cut(s) 344, 527, 619, 682
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 984
Bsp143I GATC 4 cut(s) 43, 712, 788, 1034
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 2 cut(s) 10, 838
BspANI GGCC 1 cut(s) 984
BspCNI CTCAG 1 cut(s) 571
BspDI ATCGAT 1 cut(s) 791
BspFNI CGCG 3 cut(s) 8, 10, 840
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 247, 349, 409
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 38, 1029
BspT107I GGYRCC 1 cut(s) 407
BssECI CCNNGG 4 cut(s) 213, 240, 249, 613
BssMI GATC 4 cut(s) 43, 712, 788, 1034
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 215, 375
Bst4CI ACNGT 8 cut(s) 24, 80, 272, 301, 422, 605, 617, 655
Bst6I CTCTTC 1 cut(s) 654
BstC8I GCNNGC 3 cut(s) 6, 435, 610
BstDEI CTNAG 2 cut(s) 29, 579
BstDSI CCRYGG 2 cut(s) 240, 613
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 628
BstFNI CGCG 3 cut(s) 8, 10, 840
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 4 cut(s) 46, 715, 791, 1037
BstMBI GATC 4 cut(s) 43, 712, 788, 1034
BstMWI GCNNNNNNNGC 3 cut(s) 10, 116, 837
BstNI CCWGG 2 cut(s) 215, 375
BstSCI CCNGG 4 cut(s) 94, 213, 248, 373
BstSFI CTRYAG 2 cut(s) 114, 483
BstUI CGCG 3 cut(s) 8, 10, 840
BstV1I GCAGC 2 cut(s) 136, 798
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 1034
BstYI RGATCY 1 cut(s) 1034
Bsu15I ATCGAT 1 cut(s) 791
BsuRI GGCC 1 cut(s) 984
BsuTUI ATCGAT 1 cut(s) 791
BtgI CCRYGG 2 cut(s) 240, 613
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 3 cut(s) 610, 660, 966
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 3 cut(s) 6, 435, 610
CciI TCATGA 1 cut(s) 718
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 246, 422
ClaI ATCGAT 1 cut(s) 791
CseI GACGC 1 cut(s) 817
Csp6I GTAC 1 cut(s) 187
CviAII CATG 8 cut(s) 41, 241, 310, 545, 719, 860, 892, 1004
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 29, 579
DpnI GATC 4 cut(s) 45, 714, 790, 1036
DpnII GATC 4 cut(s) 43, 712, 788, 1034
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 246, 422
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoRII CCWGG 2 cut(s) 213, 373
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 2 cut(s) 574, 760
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 8 cut(s) 44, 244, 313, 548, 722, 863, 895, 1007
FaqI GGGAC 1 cut(s) 259
FatI CATG 8 cut(s) 40, 240, 309, 544, 718, 859, 891, 1003
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 3 cut(s) 11, 150, 812
FokI GGATG 1 cut(s) 635
Fsp4HI GCNGC 3 cut(s) 11, 150, 812
FspBI CTAG 5 cut(s) 446, 497, 566, 951, 996
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 11, 150, 812
HaeIII GGCC 1 cut(s) 984
HapII CCGG 2 cut(s) 95, 249
HgaI GACGC 1 cut(s) 817
HhaI GCGC 1 cut(s) 10
Hin1II CATG 8 cut(s) 44, 244, 313, 548, 722, 863, 895, 1007
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 2 cut(s) 378, 793
HpaII CCGG 2 cut(s) 95, 249
HphI GGTGA 1 cut(s) 836
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 4 cut(s) 19, 329, 580, 594
Hpy188III TCNNGA 7 cut(s) 338, 366, 425, 566, 719, 797, 951
Hpy8I GTNNAC 1 cut(s) 601
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 3 cut(s) 794, 798, 957
HpyCH4III ACNGT 8 cut(s) 24, 80, 272, 301, 422, 605, 617, 655
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 9 cut(s) 110, 173, 572, 758, 814, 831, 903, 1003, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 116, 837
HpyF3I CTNAG 2 cut(s) 29, 579
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 8 cut(s) 44, 244, 313, 548, 722, 863, 895, 1007
HspAI GCGC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 4 cut(s) 43, 712, 788, 1034
LmnI GCTCC 1 cut(s) 1029
Lsp1109I GCAGC 2 cut(s) 136, 798
LweI GCATC 3 cut(s) 119, 559, 767
MaeI CTAG 5 cut(s) 446, 497, 566, 951, 996
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 272, 964
MalI GATC 4 cut(s) 45, 714, 790, 1036
MboI GATC 4 cut(s) 43, 712, 788, 1034
MboII GAAGA 6 cut(s) 307, 500, 671, 723, 787, 1025
MflI RGATCY 1 cut(s) 1034
MlsI TGGCCA 1 cut(s) 984
MluCI AATT 6 cut(s) 56, 139, 473, 738, 1016, 1040
MluNI TGGCCA 1 cut(s) 984
MmeI TCCRAC 1 cut(s) 897
MnlI CCTC 6 cut(s) 92, 323, 361, 475, 889, 1038
Mox20I TGGCCA 1 cut(s) 984
Mph1103I ATGCAT 2 cut(s) 574, 760
MscI TGGCCA 1 cut(s) 984
MseI TTAA 4 cut(s) 668, 698, 767, 1019
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 984
MspI CCGG 2 cut(s) 95, 249
MspR9I CCNGG 4 cut(s) 96, 215, 250, 375
MvaI CCWGG 2 cut(s) 215, 375
MvnI CGCG 3 cut(s) 8, 10, 840
MwoI GCNNNNNNNGC 3 cut(s) 10, 116, 837
NciI CCSGG 2 cut(s) 96, 250
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 43, 712, 788, 1034
NlaIII CATG 8 cut(s) 44, 244, 313, 548, 722, 863, 895, 1007
NlaIV GGNNCC 3 cut(s) 247, 349, 409
NmuCI GTSAC 1 cut(s) 964
NsiI ATGCAT 2 cut(s) 574, 760
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 378, 793
PflMI CCANNNNNTGG 1 cut(s) 619
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 3 cut(s) 12, 151, 813
Psp6I CCWGG 2 cut(s) 213, 373
PspGI CCWGG 2 cut(s) 213, 373
PspN4I GGNNCC 3 cut(s) 247, 349, 409
PspPI GGNCC 2 cut(s) 246, 422
PsuI RGATCY 1 cut(s) 1034
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 4 cut(s) 668, 698, 767, 1019
SatI GCNGC 3 cut(s) 11, 150, 812
Sau3AI GATC 4 cut(s) 43, 712, 788, 1034
Sau96I GGNCC 2 cut(s) 246, 422
ScrFI CCNGG 4 cut(s) 96, 215, 250, 375
SfaNI GCATC 3 cut(s) 119, 559, 767
SfcI CTRYAG 2 cut(s) 114, 483
SinI GGWCC 2 cut(s) 246, 422
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
Sse9I AATT 6 cut(s) 56, 139, 473, 738, 1016, 1040
SsiI CCGC 2 cut(s) 10, 838
SspMI CTAG 5 cut(s) 446, 497, 566, 951, 996
StyD4I CCNGG 4 cut(s) 94, 213, 248, 373
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 8 cut(s) 24, 80, 272, 301, 422, 605, 617, 655
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 470, 791, 796
TasI AATT 6 cut(s) 56, 139, 473, 738, 1016, 1040
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 2 cut(s) 378, 793
Tru1I TTAA 4 cut(s) 668, 698, 767, 1019
Tru9I TTAA 4 cut(s) 668, 698, 767, 1019
TscAI CASTG 3 cut(s) 610, 660, 973
TseFI GTSAC 1 cut(s) 964
TseI GCWGC 2 cut(s) 149, 811
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 5 cut(s) 210, 723, 735, 764, 880
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 610, 660, 973
Van91I CCANNNNNTGG 1 cut(s) 619
VpaK11BI GGWCC 2 cut(s) 246, 422
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 139
XbaI TCTAGA 2 cut(s) 565, 950
XspI CTAG 5 cut(s) 446, 497, 566, 951, 996
Zsp2I ATGCAT 2 cut(s) 574, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.