Rw1G023680

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
49649257 .. 49650463
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023680.1

Sequence Viewer

Length: 1134 bp
ATGGCTTCCTTCATCTCAGATCATCATTACAGCGATCCAGAGATTTTGGTACGAAAGAATAATCGATCTGTGACAACGTTGACACTCAACAGACCTCGAAAATTGAACGCGCTCTCAGTTTCCATGCTCTCGCGGCTGTCTGAACTGTTCCTCCGCTACGAGCATGATCCCCATGTCAAGTTGGTCATTCTCAAAGCTAACGGTAAGGCATTTTCACCGGGGGGCGACGTTGCGTCTAGCTGCTTTCAAAAGTTTCGCAACTGCATACACCTTATTACCTTAATGTACTTGGTGGCAACAAAGACTACACCCCAGGTTTCATTTCTCAATGGAATGACCATGGGAACCGGGGCAGGTGTTTCAATACACGGTAGTTTTCATGTGGCAACGGAGAAGATGGTGTTTGCCATGCCGGAAGCAGCTATCGGAGGGTTTCCTGATGTTGGTTCCTCTTATTTCCTATCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTTTTCCCTCAACGAAATTGGCTTCGGTAGAAGAAGCCCTAGTAAGAACTCTCGGTGCTTTTCCTAATACAAGCTCAAATGCATACTCTGAGCAACCAGCTCTGAAAGTGAACAGTGCTTACCACCGTATGGATGTTATTGACAAGTGCTTTTCTCAATCCACAGTGGAAGAGATTTTAAGCCTTGAAAAGGAGTTTGCTACATTAACCAACATAAGTGATCATGATGAATGGTTATCTTCATCAATTCAGTCAATGAAAAATGCATCGCCATCAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGCGGCTGCAAGGAGTTGGTGAGTGCATTGTTCGCGAATATAGGATTATTTGTCATGTTTTGCGTGGGGAAATCAGCAAGGATTTCATGGAGGGTTGTAGAGCTATACTGTTGGACAAGGATAAGAACCCAAAGTGGAAGCCTTCTAGATTAGAGCTTGTCACTGACGAGATGGTTGGCCACTACTTCTCTAGGTTGCATGATGACGAAGAATTAAAGCTCCCTCAAAGATCCAAATTGTCTACAACTGCCATTTCCAAGTTTTGA

Protein Analysis

377

Amino Acids

41.94

Weight (kDa)

8.63

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 21 - 210 3.2e-22 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 25 - 352 1.3e-101 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 506
AccB7I CCANNNNNTGG 1 cut(s) 685
AccI GTMKAC 1 cut(s) 1109
AccII CGCG 3 cut(s) 110, 133, 903
AciI CCGC 3 cut(s) 133, 154, 871
AclI AACGTT 1 cut(s) 77
AclWI GGATC 3 cut(s) 29, 161, 1092
AcoI YGGCCR 1 cut(s) 1045
AfaI GTAC 2 cut(s) 51, 287
AfiI CCNNNNNNNGG 3 cut(s) 443, 685, 745
AgsI TTSAA 5 cut(s) 106, 248, 363, 743, 838
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 312, 472
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 8 cut(s) 197, 240, 422, 630, 656, 971, 1024, 1087
AluI AGCT 8 cut(s) 197, 240, 422, 630, 656, 971, 1024, 1087
AlwI GGATC 3 cut(s) 29, 161, 1092
AoxI GGCC 1 cut(s) 1045
ApeKI GCWGC 3 cut(s) 240, 419, 874
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 521
AsuC2I CCSGG 2 cut(s) 219, 349
AsuHPI GGTGA 2 cut(s) 207, 899
AvaII GGWCC 1 cut(s) 521
BalI TGGCCA 1 cut(s) 1047
BanI GGYRCC 1 cut(s) 506
BbvI GCAGC 3 cut(s) 227, 431, 861
BccI CCATC 3 cut(s) 391, 835, 1033
BciT130I CCWGG 2 cut(s) 314, 474
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 2 cut(s) 219, 349
BfaI CTAG 5 cut(s) 237, 545, 596, 1014, 1059
BfuAI ACCTGC 1 cut(s) 344
BisI GCNGC 5 cut(s) 134, 241, 420, 872, 875
BlsI GCNGC 5 cut(s) 135, 242, 421, 873, 876
Bme1390I CCNGG 4 cut(s) 219, 314, 349, 474
Bme18I GGWCC 1 cut(s) 521
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 3 cut(s) 346, 448, 508
BmrFI CCNGG 4 cut(s) 219, 314, 349, 474
BmsI GCATC 1 cut(s) 830
BpuMI CCSGG 2 cut(s) 219, 349
Bsa29I ATCGAT 2 cut(s) 64, 854
BsaJI CCNNGG 4 cut(s) 218, 312, 339, 348
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 443, 685, 745
BseBI CCWGG 2 cut(s) 314, 474
BseCI ATCGAT 2 cut(s) 64, 854
BseDI CCNNGG 4 cut(s) 218, 312, 339, 348
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 3 cut(s) 443, 685, 745
BseMII CTCAG 3 cut(s) 30, 129, 636
BseXI GCAGC 3 cut(s) 227, 431, 861
Bsh1236I CGCG 3 cut(s) 110, 133, 903
BshFI GGCC 1 cut(s) 1047
BshNI GGYRCC 1 cut(s) 506
BshVI ATCGAT 2 cut(s) 64, 854
BsiSI CCGG 3 cut(s) 218, 348, 413
BslI CCNNNNNNNGG 3 cut(s) 443, 685, 745
BsnI GGCC 1 cut(s) 1047
Bsp143I GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
Bsp19I CCATGG 1 cut(s) 339
Bsp68I TCGCGA 1 cut(s) 903
BspACI CCGC 3 cut(s) 133, 154, 871
BspANI GGCC 1 cut(s) 1047
BspCNI CTCAG 3 cut(s) 29, 128, 637
BspDI ATCGAT 2 cut(s) 64, 854
BspFNI CGCG 3 cut(s) 110, 133, 903
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 3 cut(s) 346, 448, 508
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 3 cut(s) 29, 161, 1092
BspT107I GGYRCC 1 cut(s) 506
BssECI CCNNGG 4 cut(s) 218, 312, 339, 348
BssMI GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 314, 474
Bst4CI ACNGT 8 cut(s) 147, 203, 371, 521, 671, 683, 721, 978
Bst6I CTCTTC 1 cut(s) 720
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 3 cut(s) 16, 115, 645
BstDSI CCRYGG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 3 cut(s) 110, 133, 903
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 7 cut(s) 22, 37, 68, 169, 778, 854, 1100
BstMBI GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
BstMWI GCNNNNNNNGC 2 cut(s) 133, 900
BstNI CCWGG 2 cut(s) 314, 474
BstSCI CCNGG 4 cut(s) 217, 312, 347, 472
BstUI CGCG 3 cut(s) 110, 133, 903
BstV1I GCAGC 3 cut(s) 227, 431, 861
BstX2I RGATCY 1 cut(s) 1097
BstYI RGATCY 1 cut(s) 1097
Bsu15I ATCGAT 2 cut(s) 64, 854
BsuRI GGCC 1 cut(s) 1047
BsuTUI ATCGAT 2 cut(s) 64, 854
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 807
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 3 cut(s) 676, 726, 1029
BtuMI TCGCGA 1 cut(s) 903
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 534
CciI TCATGA 1 cut(s) 778
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 521
ClaI ATCGAT 2 cut(s) 64, 854
CseI GACGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 50, 286
CviQI GTAC 2 cut(s) 50, 286
DdeI CTNAG 3 cut(s) 16, 115, 645
DpnI GATC 7 cut(s) 21, 36, 67, 168, 777, 853, 1099
DpnII GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
DriI GACNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 1 cut(s) 720
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoRII CCWGG 2 cut(s) 312, 472
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 2 cut(s) 640, 823
ErhI CCWWGG 1 cut(s) 339
FbaI TGATCA 1 cut(s) 775
FblI GTMKAC 1 cut(s) 1109
Fnu4HI GCNGC 5 cut(s) 134, 241, 420, 872, 875
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 5 cut(s) 134, 241, 420, 872, 875
FspBI CTAG 5 cut(s) 237, 545, 596, 1014, 1059
GlaI GCGC 1 cut(s) 111
GluI GCNGC 5 cut(s) 134, 241, 420, 872, 875
HaeIII GGCC 1 cut(s) 1047
HapII CCGG 3 cut(s) 218, 348, 413
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 2 cut(s) 477, 856
HpaII CCGG 3 cut(s) 218, 348, 413
HphI GGTGA 2 cut(s) 207, 899
Hpy166II GTNNAC 3 cut(s) 81, 667, 1110
Hpy188I TCNGA 5 cut(s) 19, 142, 428, 646, 660
Hpy188III TCNNGA 8 cut(s) 38, 437, 465, 524, 779, 860, 902, 1014
Hpy8I GTNNAC 3 cut(s) 81, 667, 1110
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 4 cut(s) 19, 857, 861, 1020
HpyCH4III ACNGT 8 cut(s) 147, 203, 371, 521, 671, 683, 721, 978
HpyCH4IV ACGT 2 cut(s) 77, 228
HpyCH4V TGCA 6 cut(s) 264, 638, 821, 877, 894, 1066
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 900
HpyF3I CTNAG 3 cut(s) 16, 115, 645
HpySE526I ACGT 2 cut(s) 77, 228
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
LmnI GCTCC 1 cut(s) 1092
Lsp1109I GCAGC 3 cut(s) 227, 431, 861
LweI GCATC 1 cut(s) 830
MaeI CTAG 5 cut(s) 237, 545, 596, 1014, 1059
MaeII ACGT 2 cut(s) 77, 228
MaeIII GTNAC 2 cut(s) 70, 1027
MalI GATC 7 cut(s) 21, 36, 67, 168, 777, 853, 1099
MboI GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
MboII GAAGA 6 cut(s) 406, 599, 737, 786, 850, 1088
MflI RGATCY 1 cut(s) 1097
MlsI TGGCCA 1 cut(s) 1047
MluCI AATT 5 cut(s) 101, 572, 801, 1079, 1103
MluNI TGGCCA 1 cut(s) 1047
MmeI TCCRAC 1 cut(s) 960
MnlI CCTC 7 cut(s) 105, 161, 422, 460, 574, 952, 1101
Mox20I TGGCCA 1 cut(s) 1047
Mph1103I ATGCAT 2 cut(s) 640, 823
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 4 cut(s) 281, 734, 761, 1082
Msp20I TGGCCA 1 cut(s) 1047
MspI CCGG 3 cut(s) 218, 348, 413
MspR9I CCNGG 4 cut(s) 219, 314, 349, 474
MvaI CCWGG 2 cut(s) 314, 474
MvnI CGCG 3 cut(s) 110, 133, 903
MwoI GCNNNNNNNGC 2 cut(s) 133, 900
NciI CCSGG 2 cut(s) 219, 349
NcoI CCATGG 1 cut(s) 339
NdeII GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
NlaIV GGNNCC 3 cut(s) 346, 448, 508
NmuCI GTSAC 2 cut(s) 70, 1027
NruI TCGCGA 1 cut(s) 903
NsiI ATGCAT 2 cut(s) 640, 823
PagI TCATGA 1 cut(s) 778
PaqCI CACCTGC 1 cut(s) 344
PfeI GAWTC 2 cut(s) 477, 856
PflMI CCANNNNNTGG 1 cut(s) 685
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 5 cut(s) 135, 242, 421, 873, 876
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 312, 472
PspGI CCWGG 2 cut(s) 312, 472
PspN4I GGNNCC 3 cut(s) 346, 448, 508
PspPI GGNCC 1 cut(s) 521
PsrI GAACNNNNNNTAC 2 cut(s) 659, 691
PsuI RGATCY 1 cut(s) 1097
RruI TCGCGA 1 cut(s) 903
RsaI GTAC 2 cut(s) 51, 287
RsaNI GTAC 2 cut(s) 50, 286
SaqAI TTAA 4 cut(s) 281, 734, 761, 1082
SatI GCNGC 5 cut(s) 134, 241, 420, 872, 875
Sau3AI GATC 7 cut(s) 19, 34, 65, 166, 775, 851, 1097
Sau96I GGNCC 1 cut(s) 521
ScrFI CCNGG 4 cut(s) 219, 314, 349, 474
SfaNI GCATC 1 cut(s) 830
SinI GGWCC 1 cut(s) 521
Sse9I AATT 5 cut(s) 101, 572, 801, 1079, 1103
SsiI CCGC 3 cut(s) 133, 154, 871
SspMI CTAG 5 cut(s) 237, 545, 596, 1014, 1059
StyD4I CCNGG 4 cut(s) 217, 312, 347, 472
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 8 cut(s) 147, 203, 371, 521, 671, 683, 721, 978
TaiI ACGT 2 cut(s) 80, 231
TaqI TCGA 4 cut(s) 64, 97, 854, 859
TasI AATT 5 cut(s) 101, 572, 801, 1079, 1103
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 136, 874
TfiI GAWTC 2 cut(s) 477, 856
Tru1I TTAA 4 cut(s) 281, 734, 761, 1082
Tru9I TTAA 4 cut(s) 281, 734, 761, 1082
TscAI CASTG 3 cut(s) 676, 726, 1036
TseFI GTSAC 2 cut(s) 70, 1027
TseI GCWGC 3 cut(s) 240, 419, 874
Tsp45I GTSAC 2 cut(s) 70, 1027
TspDTI ATGAA 6 cut(s) 309, 368, 786, 798, 827, 943
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 3 cut(s) 676, 726, 1036
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 521
XagI CCTNNNNNAGG 1 cut(s) 743
XbaI TCTAGA 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 1109
XspI CTAG 5 cut(s) 237, 545, 596, 1014, 1059
Zsp2I ATGCAT 2 cut(s) 640, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.