RLG00000029626

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
41502808 .. 41504001
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029626

Sequence Viewer

Length: 1194 bp
ATGGCTTCTTTCAACTCAGATCATCATGGGAATCCAGAGATTCTAGTACAAGAGAATAATCCTTTCATTAGGACATTGACATTGCACAAGCCTCAAAAATTGAATGCTCTATCCACTCCCATGGTCTCGCAGTTGTTTGAGCTATTCCTCAACTACGAGCATGATGCCTTTGTCAGGTTAGTCATTCTTAAAGGTAGCGGAAAAGCTTTTTCTGCCGGTGTTGATGTTGCGTATGCAGCACGTCATCTCTACAATGGCAATTTGAGACCTGTTCTCAAATTGTTTAAAACTGCATACAGCCTAATGTATTTCCTAGCAATAAAAACTACACCCCAGGTTTCATTTCTTAATGGAATCACTATGGGGATCGGGGCAGGTGTTTCTATACATGGAAGCTTTCGTGTAGCAACGGAGAATACAGTGTTTGCTATGCCAGAAACGGCTATTGGATCGTTTCCTGATGTTGGTTCTTCTTACTACCTTTCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGATGGTTCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTGTTCCGTCATCTAAGTTAGCTTTGCTAGAAGAAGCCCTAGTAAGGAAACTAGGCGCTTCTTCAACTAATACAAGCTCAACTGATGATTATGCTATTATTTCAGCTATTCTAGATGAATACTCCGAGCAACCAGCTCCAAAAGCGAAGAGGGCTTACCACTATATGGATGTTATCGACAAGTGTTTTTCTCAATCAACAATGGAAGAAATATTAAGTAGCCTAGAGAAGGAGCTTGCTGCCAAAATGAACAAAACTGATCACCATAAATGGTTATCATCAACAATTCAATTACTAAGACAGGCATCACCAACAAGTTTGAAGATTACTTTGAGATTGATTCGAGGTGGAAGGCAGCTACAAGGAGTTGGTGAGTGCATTGTTCATGAGTATAGGATTGTTTGCCATGTTTTGTATGGTGAAATCAGCAAGGACTTTATGGAGGGTTGCAGAGCTATGCTGTTGGACAAAGATAAGAACCCAAAGTGGAAGCCTTCTAAATTGGAGCTAGTCACAGACCAAATGGTTGAGCACTACTTCTCTAGGTTAGAAGATGACGAAGAATTAAAGCTCCCTCAAACATTCAATTTACCTGTCACTGCCATTTTCAAGATTTGA

Protein Analysis

398

Amino Acids

44.28

Weight (kDa)

6.9

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 23 - 372 2.2e-112 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 23 - 235 2.6e-24 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 527
AccB7I CCANNNNNTGG 1 cut(s) 742
AciI CCGC 1 cut(s) 198
AclWI GGATC 2 cut(s) 374, 457
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 5 cut(s) 174, 464, 621, 742, 805
AgsI TTSAA 8 cut(s) 13, 103, 486, 642, 866, 898, 1162, 1186
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 2 cut(s) 333, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 2 cut(s) 130, 259
AlwI GGATC 2 cut(s) 374, 457
ApeKI GCWGC 3 cut(s) 236, 815, 931
AspLEI GCGC 1 cut(s) 635
AsuHPI GGTGA 4 cut(s) 830, 876, 959, 1007
BanI GGYRCC 1 cut(s) 527
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 3 cut(s) 248, 802, 943
BccI CCATC 1 cut(s) 533
BceAI ACGGC 1 cut(s) 456
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 2 cut(s) 335, 495
BclI TGATCA 1 cut(s) 835
BcoDI GTCTC 2 cut(s) 130, 259
BfoI RGCGCY 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 3 cut(s) 237, 816, 932
BlsI GCNGC 3 cut(s) 238, 817, 933
Bme1390I CCNGG 2 cut(s) 335, 495
BmgBI CACGTC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 2 cut(s) 335, 495
BmsI GCATC 2 cut(s) 154, 890
BsaI GGTCTC 2 cut(s) 130, 259
BsaJI CCNNGG 2 cut(s) 120, 333
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 464, 621, 742, 805
Bse118I RCCGGY 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 2 cut(s) 335, 495
BseDI CCNNGG 2 cut(s) 120, 333
BseGI GGATG 2 cut(s) 544, 751
BseLI CCNNNNNNNGG 5 cut(s) 174, 464, 621, 742, 805
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 248, 802, 943
BshNI GGYRCC 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 1110
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 5 cut(s) 174, 464, 621, 742, 805
BsmAI GTCTC 2 cut(s) 130, 259
BsmI GAATGC 1 cut(s) 109
Bso31I GGTCTC 2 cut(s) 130, 259
Bsp1286I GDGCHC 1 cut(s) 1110
Bsp143I GATC 4 cut(s) 19, 366, 449, 835
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 2 cut(s) 374, 457
BspT107I GGYRCC 1 cut(s) 527
BspTNI GGTCTC 2 cut(s) 130, 259
BsrDI GCAATG 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 120, 333
BssMI GATC 4 cut(s) 19, 366, 449, 835
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 335, 495
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 719
BstC8I GCNNGC 2 cut(s) 555, 813
BstDEI CTNAG 3 cut(s) 16, 591, 872
BstDSI CCRYGG 1 cut(s) 120
BstENI CCTNNNNNAGG 2 cut(s) 172, 803
BstF5I GGATG 2 cut(s) 544, 751
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 4 cut(s) 22, 369, 452, 838
BstMAI GTCTC 2 cut(s) 130, 259
BstMBI GATC 4 cut(s) 19, 366, 449, 835
BstMWI GCNNNNNNNGC 4 cut(s) 212, 236, 719, 728
BstNI CCWGG 2 cut(s) 335, 495
BstSCI CCNGG 2 cut(s) 333, 493
BstV1I GCAGC 3 cut(s) 248, 802, 943
BstXI CCANNNNNNTGG 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 544, 751
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 2 cut(s) 426, 1173
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 2 cut(s) 555, 813
CciI TCATGA 1 cut(s) 961
CfoI GCGC 1 cut(s) 635
Cfr10I RCCGGY 1 cut(s) 215
Csp6I GTAC 1 cut(s) 47
CviAII CATG 6 cut(s) 26, 121, 161, 389, 962, 983
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 3 cut(s) 16, 591, 872
DpnI GATC 4 cut(s) 21, 368, 451, 837
DpnII GATC 4 cut(s) 19, 366, 449, 835
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 130, 259
EcoNI CCTNNNNNAGG 2 cut(s) 172, 803
EcoRII CCWGG 2 cut(s) 333, 493
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 6 cut(s) 29, 124, 164, 392, 965, 986
FatI CATG 6 cut(s) 25, 120, 160, 388, 961, 982
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 3 cut(s) 237, 816, 932
FokI GGATG 2 cut(s) 551, 758
Fsp4HI GCNGC 3 cut(s) 237, 816, 932
GlaI GCGC 1 cut(s) 634
GluI GCNGC 3 cut(s) 237, 816, 932
HaeII RGCGCY 1 cut(s) 636
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 635
Hin1II CATG 6 cut(s) 29, 124, 164, 392, 965, 986
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HindIII AAGCTT 2 cut(s) 204, 394
HinfI GANTC 5 cut(s) 31, 40, 354, 498, 916
HpaII CCGG 1 cut(s) 216
HphI GGTGA 4 cut(s) 830, 876, 959, 1007
Hpy188I TCNGA 3 cut(s) 19, 547, 703
Hpy188III TCNNGA 6 cut(s) 35, 458, 486, 689, 962, 1186
HpyAV CCTTC 3 cut(s) 799, 921, 1080
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 85, 236, 293, 954, 1026
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 236, 719, 728
HpyF3I CTNAG 3 cut(s) 16, 591, 872
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 6 cut(s) 29, 124, 164, 392, 965, 986
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 4 cut(s) 19, 366, 449, 835
LmnI GCTCC 4 cut(s) 718, 808, 1081, 1152
Lsp1109I GCAGC 3 cut(s) 248, 802, 943
LweI GCATC 2 cut(s) 154, 890
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 1087, 1171
MalI GATC 4 cut(s) 21, 368, 451, 837
MboI GATC 4 cut(s) 19, 366, 449, 835
MboII GAAGA 8 cut(s) 462, 620, 630, 736, 794, 910, 1139, 1148
MhlI GDGCHC 1 cut(s) 1110
MluCI AATT 8 cut(s) 98, 259, 278, 861, 866, 1076, 1139, 1162
MmeI TCCRAC 1 cut(s) 1020
MnlI CCTC 6 cut(s) 102, 158, 720, 914, 1012, 1161
MseI TTAA 5 cut(s) 189, 285, 348, 791, 1142
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 2 cut(s) 335, 495
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 2 cut(s) 335, 495
MwoI GCNNNNNNNGC 4 cut(s) 212, 236, 719, 728
NcoI CCATGG 1 cut(s) 120
NdeII GATC 4 cut(s) 19, 366, 449, 835
NlaIII CATG 6 cut(s) 29, 124, 164, 392, 965, 986
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 2 cut(s) 1087, 1171
PagI TCATGA 1 cut(s) 961
PaqCI CACCTGC 1 cut(s) 365
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 5 cut(s) 31, 40, 354, 498, 916
PflMI CCANNNNNTGG 1 cut(s) 742
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 3 cut(s) 238, 817, 933
Psp6I CCWGG 2 cut(s) 333, 493
PspGI CCWGG 2 cut(s) 333, 493
PspN4I GGNNCC 1 cut(s) 529
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 5 cut(s) 189, 285, 348, 791, 1142
SatI GCNGC 3 cut(s) 237, 816, 932
Sau3AI GATC 4 cut(s) 19, 366, 449, 835
ScrFI CCNGG 2 cut(s) 335, 495
SduI GDGCHC 1 cut(s) 1110
SfaNI GCATC 2 cut(s) 154, 890
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 8 cut(s) 98, 259, 278, 861, 866, 1076, 1139, 1162
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 789
StyD4I CCNGG 2 cut(s) 333, 493
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 753, 919
TasI AATT 8 cut(s) 98, 259, 278, 861, 866, 1076, 1139, 1162
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 5 cut(s) 31, 40, 354, 498, 916
Tru1I TTAA 5 cut(s) 189, 285, 348, 791, 1142
Tru9I TTAA 5 cut(s) 189, 285, 348, 791, 1142
TscAI CASTG 2 cut(s) 426, 1180
TseFI GTSAC 2 cut(s) 1087, 1171
TseI GCWGC 3 cut(s) 236, 815, 931
Tsp45I GTSAC 2 cut(s) 1087, 1171
TspDTI ATGAA 5 cut(s) 55, 330, 708, 839, 950
TspGWI ACGGA 2 cut(s) 425, 573
TspRI CASTG 2 cut(s) 426, 1180
Van91I CCANNNNNTGG 1 cut(s) 742
XagI CCTNNNNNAGG 2 cut(s) 172, 803
XbaI TCTAGA 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.