Rw1G014380

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
32117322 .. 32125160
7839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014380.1

Sequence Viewer

Length: 1158 bp
ATGGCTTCTCTCAACTCAACCCGACGCGACGACGACGATTCGGTGGTTTTGGTACGAGAGGATTTCTTTGCGAGGACGTTGACATTGAACAGGCCTCGGCAACTGAATGCCCTTAACTTTGAAATGATTTCTCGACTGTTGGAACTTTTCCTTGCATATGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGAAATTGGAGATTAGGTGCAATTTTTTTTCGAAAGGAGTTTACCTTAAACTACTTAATGGCAACATACAGTAAACCACAGGTTTCAATTCTGAATGGAATTGTCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGATTCCGTGTTGCAACTGAGAATTCGGTTTTCGCAATGCCAGAAACAGCTCTGGGACTTTTTCCAGATGTAGGTGCCTCTTATTATTTGTCCAGGCTTCCTGGATTCTTTGGAGAATATGTTGGTCTTACAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGCAGATCTATGCAAAGTTGATTCAAGTGAGTTCACAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCAGCTCTAAAAGAGAAAAGTGCTTATTACCGGATGGATGTTATTGACAAGTGCTTTTCTAGAAGAACAGTGGAAGAAATTTTATCTGCCCTCGAGGAGGAGGCTGCAAAGAGGGCAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGAGAAGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTTTGCGAGGAGAAGTCAGCAAGGATTTCAGAGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAGGAACCCAAAGTGGGAGCCTTCTAAATTGGAGCTCATCAATGATCATATGGTTGAGCAGTACTTCTCTAAGTTGGATGATGAAGAGTGGGAAGACTTAAAGCTCCCTGCAAGATTCAACTTGCCTGTAACTGCCATTGCAAAGCTTTGA

Protein Analysis

385

Amino Acids

43.23

Weight (kDa)

6.29

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 25 - 358 2.1e-129 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 27 - 253 4.4e-29 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 776
AccB1I GGYRCC 2 cut(s) 470, 530
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 675
AcsI RAATTY 2 cut(s) 418, 762
AcuI CTGAAG 1 cut(s) 878
AfaI GTAC 2 cut(s) 54, 1070
AfiI CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1021
AgsI TTSAA 9 cut(s) 88, 122, 345, 611, 636, 656, 827, 859, 1126
AjnI CCWGG 2 cut(s) 488, 496
AluBI AGCT 7 cut(s) 446, 659, 689, 989, 1042, 1111, 1153
AluI AGCT 7 cut(s) 446, 659, 689, 989, 1042, 1111, 1153
Alw21I GWGCWC 1 cut(s) 1044
AlwI GGATC 1 cut(s) 675
Ama87I CYCGRG 1 cut(s) 776
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 679, 788
ApoI RAATTY 2 cut(s) 418, 762
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 934
AsuHPI GGTGA 3 cut(s) 196, 236, 837
AsuII TTCGAA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 776
BanI GGYRCC 2 cut(s) 470, 530
BanII GRGCYC 1 cut(s) 1044
BbsI GAAGAC 1 cut(s) 1107
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 2 cut(s) 691, 775
BccI CCATC 3 cut(s) 395, 536, 712
BciT130I CCWGG 2 cut(s) 490, 498
BclI TGATCA 1 cut(s) 1051
BfaI CTAG 1 cut(s) 744
BglII AGATCT 1 cut(s) 616
BisI GCNGC 3 cut(s) 234, 680, 789
BlsI GCNGC 3 cut(s) 235, 681, 790
BmcAI AGTACT 1 cut(s) 1070
Bme1390I CCNGG 2 cut(s) 490, 498
BmeT110I CYCGRG 1 cut(s) 776
BmiI GGNNCC 4 cut(s) 472, 532, 1013, 1026
BmrFI CCNGG 2 cut(s) 490, 498
BmsI GCATC 3 cut(s) 157, 691, 851
BpiI GAAGAC 1 cut(s) 1107
Bpu14I TTCGAA 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 95, 391
BsaWI WCCGGW 1 cut(s) 714
BsaXI ACNNNNNCTCC 4 cut(s) 259, 289, 501, 531
Bsc4I CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1021
Bse3DI GCAATG 2 cut(s) 438, 1143
BseBI CCWGG 2 cut(s) 490, 498
BseDI CCNNGG 2 cut(s) 95, 391
BseGI GGATG 7 cut(s) 172, 387, 547, 682, 723, 727, 1090
BseLI CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1021
BseMI GCAATG 2 cut(s) 438, 1143
BseMII CTCAG 1 cut(s) 405
BseRI GAGGAG 4 cut(s) 176, 794, 797, 966
BseXI GCAGC 2 cut(s) 691, 775
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 2 cut(s) 470, 530
BsiHKAI GWGCWC 1 cut(s) 1044
BsiHKCI CYCGRG 1 cut(s) 776
BsiSI CCGG 1 cut(s) 715
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 4 cut(s) 467, 594, 781, 1021
BsmFI GGGAC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 776
Bsp119I TTCGAA 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp143I GATC 4 cut(s) 616, 667, 872, 1051
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 4 cut(s) 472, 532, 1013, 1026
BspPI GGATC 1 cut(s) 675
BspQI GCTCTTC 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 289
BspT107I GGYRCC 2 cut(s) 470, 530
BsrDI GCAATG 2 cut(s) 438, 1143
BssECI CCNNGG 2 cut(s) 95, 391
BssMI GATC 4 cut(s) 616, 667, 872, 1051
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 2 cut(s) 490, 498
Bst4CI ACNGT 3 cut(s) 138, 329, 754
Bst6I CTCTTC 2 cut(s) 199, 1086
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 2 cut(s) 414, 1077
BstDSI CCRYGG 1 cut(s) 391
BstENI CCTNNNNNAGG 2 cut(s) 592, 779
BstF5I GGATG 7 cut(s) 172, 387, 547, 682, 723, 727, 1090
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 4 cut(s) 619, 670, 875, 1054
BstMBI GATC 4 cut(s) 616, 667, 872, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 215, 797
BstNI CCWGG 2 cut(s) 490, 498
BstSCI CCNGG 2 cut(s) 488, 496
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 691, 775
BstV2I GAAGAC 1 cut(s) 1107
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 7 cut(s) 172, 387, 547, 682, 723, 727, 1090
BtsIMutI CAGTG 1 cut(s) 759
Cac8I GCNNGC 1 cut(s) 558
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 53, 1069
CviAII CATG 3 cut(s) 364, 392, 941
CviQI GTAC 2 cut(s) 53, 1069
DdeI CTNAG 2 cut(s) 414, 1077
DpnI GATC 4 cut(s) 618, 669, 874, 1053
DpnII GATC 4 cut(s) 616, 667, 872, 1051
Eam1104I CTCTTC 2 cut(s) 199, 1086
EarI CTCTTC 2 cut(s) 199, 1086
Ecl136II GAGCTC 1 cut(s) 1042
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 1044
Eco53kI GAGCTC 1 cut(s) 1042
Eco57I CTGAAG 1 cut(s) 878
Eco88I CYCGRG 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 1042
EcoNI CCTNNNNNAGG 2 cut(s) 592, 779
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 488, 496
EcoT14I CCWWGG 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 1044
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 3 cut(s) 367, 395, 944
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 1 cut(s) 465
FatI CATG 3 cut(s) 363, 391, 940
FauNDI CATATG 2 cut(s) 157, 1056
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 3 cut(s) 234, 680, 789
FokI GGATG 7 cut(s) 179, 374, 554, 669, 730, 734, 1097
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 3 cut(s) 234, 680, 789
FspBI CTAG 1 cut(s) 744
GluI GCNGC 3 cut(s) 234, 680, 789
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 715
HgaI GACGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 367, 395, 944
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 1151
HinfI GANTC 6 cut(s) 38, 187, 399, 501, 632, 1122
HpaII CCGG 1 cut(s) 715
HphI GGTGA 3 cut(s) 196, 236, 837
Hpy166II GTNNAC 4 cut(s) 81, 300, 332, 645
Hpy188I TCNGA 2 cut(s) 351, 974
Hpy188III TCNNGA 6 cut(s) 132, 245, 461, 608, 744, 920
Hpy8I GTNNAC 4 cut(s) 81, 300, 332, 645
Hpy99I CGWCG 4 cut(s) 27, 32, 35, 38
HpyAV CCTTC 4 cut(s) 251, 878, 882, 1038
HpyCH4III ACNGT 3 cut(s) 138, 329, 754
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 9 cut(s) 155, 278, 410, 572, 624, 791, 984, 1118, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 797
HpyF3I CTNAG 2 cut(s) 414, 1077
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 3 cut(s) 367, 395, 944
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 4 cut(s) 616, 667, 872, 1051
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 3 cut(s) 1024, 1039, 1116
Lsp1109I GCAGC 2 cut(s) 691, 775
LweI GCATC 3 cut(s) 157, 691, 851
MaeI CTAG 1 cut(s) 744
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 1135
MalI GATC 4 cut(s) 618, 669, 874, 1053
MboI GATC 4 cut(s) 616, 667, 872, 1051
MboII GAAGA 6 cut(s) 216, 759, 770, 871, 1103, 1112
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 1044
MmeI TCCRAC 3 cut(s) 120, 978, 1062
MroXI GAANNNNTTC 1 cut(s) 934
MseI TTAA 5 cut(s) 114, 252, 305, 314, 1106
MspI CCGG 1 cut(s) 715
MspR9I CCNGG 2 cut(s) 490, 498
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 2 cut(s) 490, 498
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 215, 797
NcoI CCATGG 1 cut(s) 391
NdeI CATATG 2 cut(s) 157, 1056
NdeII GATC 4 cut(s) 616, 667, 872, 1051
NlaIII CATG 3 cut(s) 367, 395, 944
NlaIV GGNNCC 4 cut(s) 472, 532, 1013, 1026
NmeAIII GCCGAG 1 cut(s) 76
NspV TTCGAA 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 776
PceI AGGCCT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 199
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 934
PfeI GAWTC 6 cut(s) 38, 187, 399, 501, 632, 1122
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 3 cut(s) 235, 681, 790
PshBI ATTAAT 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 488, 496
PspGI CCWGG 2 cut(s) 488, 496
PspN4I GGNNCC 4 cut(s) 472, 532, 1013, 1026
PspXI VCTCGAGB 1 cut(s) 776
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 2 cut(s) 54, 1070
RsaNI GTAC 2 cut(s) 53, 1069
SacI GAGCTC 1 cut(s) 1044
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 5 cut(s) 114, 252, 305, 314, 1106
SatI GCNGC 3 cut(s) 234, 680, 789
Sau3AI GATC 4 cut(s) 616, 667, 872, 1051
ScaI AGTACT 1 cut(s) 1070
ScrFI CCNGG 2 cut(s) 490, 498
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 3 cut(s) 157, 691, 851
Sfr274I CTCGAG 1 cut(s) 776
SfuI TTCGAA 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 191, 776
SmoI CTYRAG 2 cut(s) 191, 776
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 744
SstI GAGCTC 1 cut(s) 1044
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 488, 496
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 3 cut(s) 138, 329, 754
TaiI ACGT 1 cut(s) 80
TaqI TCGA 4 cut(s) 133, 289, 777, 815
TatI WGTACW 1 cut(s) 1068
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 6 cut(s) 38, 187, 399, 501, 632, 1122
Tru1I TTAA 5 cut(s) 114, 252, 305, 314, 1106
Tru9I TTAA 5 cut(s) 114, 252, 305, 314, 1106
TscAI CASTG 1 cut(s) 759
TseI GCWGC 2 cut(s) 679, 788
TspDTI ATGAA 2 cut(s) 270, 1104
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 759
VspI ATTAAT 1 cut(s) 252
XagI CCTNNNNNAGG 2 cut(s) 592, 779
XapI RAATTY 2 cut(s) 418, 762
XbaI TCTAGA 1 cut(s) 743
XhoI CTCGAG 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 934
XspI CTAG 1 cut(s) 744
ZrmI AGTACT 1 cut(s) 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.