Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

24141327 .. 24141956

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCTTGCTTGTGGTCTAGCAACTAACTTTGTTCCCTCAGCCAAATTGCCTCTATTGGAAAAAGCTCTAATTTCCAGAGCAGCTTCAGCTACTTCATCTAGCCGTGATCTTGCTTCTATCTCAGCAATTATAGACGAATACTTGCTGCAGCAACCGGCTCTGAATGAGAAAAGTGCTTTTCACAAAATGGATGTCATTGCCAAGTGCTTTTCCAGACCAACAGTTGAACAAATCTTAAGTGCCCTTGAGATGGAGGCTACTACAACAGATACAAACAGAGCAGATGATCCATTAGAGAAGGAAGGGTGCAGGCAATTGATGAATCCTTGTCCGCGAGAGTACAGAATAACTTGTCATGTTCTGCGAGGGCAAATCAGCAAGGACTTCAGAGAAGGTTGCAGAGCTATCTTGTGGGACAAGGATAAGAAACCAGAGTGGAAGCCTTCTAGTTTGGAGCTCATCACGGATCATATGGTTGACCAATGCTTCTCTAGGTTGGATGGTGATGAAGAATTAAAGCTCCCTCAAAGATCCAACTTGCCTGTATTTGCCAATGCCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

189

Amino Acids

21.08

Weight (kDa)

5.97

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	3 cut(s)	281, 474, 525
AcuI	CTGAAG	2 cut(s)	69, 370
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflII	CTTAAG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	227
AluBI	AGCT	7 cut(s)	65, 83, 89, 404, 457, 520, 562
AluI	AGCT	7 cut(s)	65, 83, 89, 404, 457, 520, 562
Alw21I	GWGCWC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	281, 474, 525
ApeKI	GCWGC	3 cut(s)	80, 145, 148
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AsuHPI	GGTGA	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	92, 132, 160
BccI	CCATC	2 cut(s)	244, 494
BceAI	ACGGC	1 cut(s)	87
BfaI	CTAG	4 cut(s)	17, 99, 447, 492
BfmI	CTRYAG	1 cut(s)	146
BfrI	CTTAAG	1 cut(s)	235
BisI	GCNGC	3 cut(s)	81, 146, 149
BlsI	GCNGC	3 cut(s)	82, 147, 150
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	196, 505
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	51, 135
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	92, 132, 160
BsgI	GTGCAG	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	244, 459
Bsp143I	GATC	4 cut(s)	106, 286, 466, 530
BspACI	CCGC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	50, 134
BspFNI	CGCG	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	150
BspPI	GGATC	3 cut(s)	281, 474, 525
BspTI	CTTAAG	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssMI	GATC	4 cut(s)	106, 286, 466, 530
Bst4CI	ACNGT	1 cut(s)	223
BstAFI	CTTAAG	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	6, 311
BstDEI	CTNAG	2 cut(s)	37, 121
BstF5I	GGATG	2 cut(s)	196, 505
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	4 cut(s)	109, 289, 469, 533
BstMBI	GATC	4 cut(s)	106, 286, 466, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	92, 132, 160
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	196, 505
Cac8I	GCNNGC	2 cut(s)	6, 311
Cfr10I	RCCGGY	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	356
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	37, 121
DpnI	GATC	4 cut(s)	108, 288, 468, 532
DpnII	GATC	4 cut(s)	106, 286, 466, 530
Ecl136II	GAGCTC	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	69, 370
EcoICRI	GAGCTC	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	459
FaeI	CATG	1 cut(s)	359
FaiI	YATR	4 cut(s)	131, 357, 471, 473
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	471
Fnu4HI	GCNGC	3 cut(s)	81, 146, 149
FokI	GGATG	2 cut(s)	203, 512
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	3 cut(s)	81, 146, 149
FspBI	CTAG	4 cut(s)	17, 99, 447, 492
GluI	GCNGC	3 cut(s)	81, 146, 149
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	2 cut(s)	162, 389
Hpy188III	TCNNGA	2 cut(s)	75, 213
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	4 cut(s)	292, 296, 386, 453
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	148, 309, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	37, 121
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	4 cut(s)	106, 286, 466, 530
LmnI	GCTCC	2 cut(s)	454, 525
LpnPI	CCDG	6 cut(s)	88, 168, 226, 295, 444, 555
Lsp1109I	GCAGC	3 cut(s)	92, 132, 160
MaeI	CTAG	4 cut(s)	17, 99, 447, 492
MalI	GATC	4 cut(s)	108, 288, 468, 532
MboI	GATC	4 cut(s)	106, 286, 466, 530
MboII	GAAGA	1 cut(s)	521
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	244, 459
MluCI	AATT	5 cut(s)	44, 69, 126, 314, 512
MmeI	TCCRAC	2 cut(s)	477, 558
MnlI	CCTC	5 cut(s)	46, 60, 247, 359, 534
MseI	TTAA	2 cut(s)	236, 515
MspCI	CTTAAG	1 cut(s)	235
MspI	CCGG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	471
NdeII	GATC	4 cut(s)	106, 286, 466, 530
NlaIII	CATG	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	82, 147, 150
Psp124BI	GAGCTC	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	236, 515
SatI	GCNGC	3 cut(s)	81, 146, 149
Sau3AI	GATC	4 cut(s)	106, 286, 466, 530
SduI	GDGCHC	2 cut(s)	244, 459
SetI	ASST	9 cut(s)	67, 85, 91, 397, 406, 459, 497, 522, 564
SfcI	CTRYAG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	235, 245
SmoI	CTYRAG	2 cut(s)	235, 245
Sse9I	AATT	5 cut(s)	44, 69, 126, 314, 512
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	4 cut(s)	17, 99, 447, 492
SstI	GAGCTC	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	223
TasI	AATT	5 cut(s)	44, 69, 126, 314, 512
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	236, 515
Tru9I	TTAA	2 cut(s)	236, 515
TseI	GCWGC	3 cut(s)	80, 145, 148
TspDTI	ATGAA	3 cut(s)	84, 335, 522
TspGWI	ACGGA	1 cut(s)	479
Vha464I	CTTAAG	1 cut(s)	235
XspI	CTAG	4 cut(s)	17, 99, 447, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.