Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

24500719 .. 24501785

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG129700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTTGCTTTGGGTCTAGCAACTTACTTTGTTCCGTCATCTAAGCTAGCTTTGCTAGAAGAAGCCCTGGTAAGGAAACTAGGCGCTTTTTCAACTAATACAAGCTCAACTGATGATTATGCTATTGTTTCAGCTATTCTAGATGAATACTCTGAGCAACCAGCTCCAAAAGGGAAGAGTGCATACCACTATATGGATGTTATCGACAAGTGTTTTTCTCAATCAACAGTGGAAGAAATATTAAGTAGCCTACAGAAGGAGCTTGCTGCCAAAATGAATAAAACTGATCACCATAAATGGTTATCATCAGCAATTCAATTTCTAAGACAGGCATCACCAACAAGTTTGAAGATTACTTTGAGATTGATTCGAGGTGGAAGGCAGCTGCGAGGAGTTGGTGAGTGCATTGTTCATGAGTATAGGATTGTTTGTCATGTTTTTTATGGTGAAATTAGCAAAGACTTTATGGAGGGTTGCAGAGCTATGTTGTTGGACAAAGATAAGAACCCAAAGTGGAAGCCTTCTAAATTGGAGCTCGTCACGGACCAGATGGTTGAGCACTACTTCTCTAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

192

Amino Acids

21.77

Weight (kDa)

8.59

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	1 - 189	1.1e-42	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AfiI	CCNNNNNNNGG	3 cut(s)	72, 193, 256
AgsI	TTSAA	3 cut(s)	93, 317, 349
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	9 cut(s)	46, 50, 105, 134, 164, 262, 385, 482, 535
AluI	AGCT	9 cut(s)	46, 50, 105, 134, 164, 262, 385, 482, 535
Alw21I	GWGCWC	2 cut(s)	537, 561
ApeKI	GCWGC	3 cut(s)	266, 382, 385
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	4 cut(s)	281, 327, 410, 458
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
Bbv12I	GWGCWC	2 cut(s)	537, 561
BbvI	GCAGC	3 cut(s)	253, 372, 394
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	286
BfaI	CTAG	6 cut(s)	17, 47, 56, 80, 140, 570
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	3 cut(s)	267, 383, 386
BlsI	GCNGC	3 cut(s)	268, 384, 387
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	341
BmtI	GCTAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 193, 256
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	3 cut(s)	72, 193, 256
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	253, 372, 394
BsiHKAI	GWGCWC	2 cut(s)	537, 561
BslI	CCNNNNNNNGG	3 cut(s)	72, 193, 256
Bsp1286I	GDGCHC	2 cut(s)	537, 561
Bsp143I	GATC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	6, 48, 264
BstDEI	CTNAG	3 cut(s)	42, 153, 323
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	253, 372, 394
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	3 cut(s)	6, 48, 264
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	544
CviAII	CATG	2 cut(s)	413, 434
DdeI	CTNAG	3 cut(s)	42, 153, 323
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	544
Eco53kI	GAGCTC	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	535
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	537
FaeI	CATG	2 cut(s)	416, 437
FatI	CATG	2 cut(s)	412, 433
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	267, 383, 386
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	3 cut(s)	267, 383, 386
FspBI	CTAG	6 cut(s)	17, 47, 56, 80, 140, 570
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	267, 383, 386
HaeII	RGCGCY	1 cut(s)	87
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	416, 437
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	367
HphI	GGTGA	4 cut(s)	281, 327, 410, 458
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	140, 413
HpyAV	CCTTC	3 cut(s)	250, 372, 531
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	182, 405, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	3 cut(s)	42, 153, 323
Hsp92II	CATG	2 cut(s)	416, 437
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	169, 259, 532
LpnPI	CCDG	5 cut(s)	53, 80, 174, 314, 560
Lsp1109I	GCAGC	3 cut(s)	253, 372, 394
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	6 cut(s)	17, 47, 56, 80, 140, 570
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	71, 187, 245, 361
MhlI	GDGCHC	2 cut(s)	537, 561
MluCI	AATT	4 cut(s)	312, 317, 450, 527
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	3 cut(s)	365, 383, 463
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	286
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	416, 437
NmuCI	GTSAC	1 cut(s)	538
PagI	TCATGA	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	367
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	268, 384, 387
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	3 cut(s)	267, 383, 386
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	537, 561
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	544
Sse9I	AATT	4 cut(s)	312, 317, 450, 527
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	6 cut(s)	17, 47, 56, 80, 140, 570
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	204, 370
TasI	AATT	4 cut(s)	312, 317, 450, 527
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	3 cut(s)	266, 382, 385
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	159, 290, 401
TspGWI	ACGGA	2 cut(s)	24, 557
TspRI	CASTG	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	544
XagI	CCTNNNNNAGG	1 cut(s)	254
XbaI	TCTAGA	1 cut(s)	139
XspI	CTAG	6 cut(s)	17, 47, 56, 80, 140, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.