Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

37596791 .. 37597405

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57157

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTCCTGAAAAGCTTGCATGCTTGCGGTCTAGCAACTCATTTTGTTCCCTCAACCAAATTGGCTTTGTCAGAAGAAGTTCAAGTATCCAAATCACTTCAAAAGGCATCGCCAACAAGTTTGAAACTTTGTTTGAGATCAATTAGAGAAGGAAGGTTTCAAGGACTTGGTGAATGTCTTGCTCAAGAGTATAGAATAGCGTGTCATCTTATGCGAGGAAAAATTAGGTCAGACTTTAGAGATGGTTGCACAACTATATTGTCAAAAAAGGATAACATCCAAAAGTGGGAGCCTTGTAAATTGGAGCTCATCACTGACCAGATGGTTGATCAGTACTTCTTGAAGTTGGATGATGACGAAAATTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

123

Amino Acids

14.0

Weight (kDa)

7.6

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	28 - 113	3.4e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	83, 101, 124, 161, 343
AluBI	AGCT	2 cut(s)	15, 307
AluI	AGCT	2 cut(s)	15, 307
Alw21I	GWGCWC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	361
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BccI	CCATC	2 cut(s)	236, 316
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	291
BmsI	GCATC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
BseGI	GGATG	2 cut(s)	276, 355
BseLI	CCNNNNNNNGG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	137, 328
BspACI	CCGC	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	291
BssMI	GATC	2 cut(s)	137, 328
BstC8I	GCNNGC	3 cut(s)	17, 21, 25
BstF5I	GGATG	2 cut(s)	276, 355
BstKTI	GATC	2 cut(s)	140, 331
BstMBI	GATC	2 cut(s)	137, 328
BstNSI	RCATGY	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	276, 355
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	17, 21, 25
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	4 cut(s)	15, 65, 292, 307
CviKI_1	RGCY	4 cut(s)	15, 65, 292, 307
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	2 cut(s)	139, 330
DpnII	GATC	2 cut(s)	137, 328
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	1 cut(s)	23
FaiI	YATR	4 cut(s)	21, 192, 212, 257
FatI	CATG	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	328
FokI	GGATG	2 cut(s)	263, 362
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	13
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	73, 232
Hpy188III	TCNNGA	3 cut(s)	7, 185, 340
HpyAV	CCTTC	2 cut(s)	143, 147
HpyCH4V	TGCA	2 cut(s)	19, 249
Hsp92II	CATG	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	137, 328
LmnI	GCTCC	2 cut(s)	289, 304
LpnPI	CCDG	2 cut(s)	20, 332
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	32
MalI	GATC	2 cut(s)	139, 330
MboI	GATC	2 cut(s)	137, 328
MboII	GAAGA	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	5 cut(s)	59, 141, 222, 299, 361
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	2 cut(s)	61, 209
MroXI	GAANNNNTTC	1 cut(s)	78
NdeII	GATC	2 cut(s)	137, 328
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	291
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacI	GAGCTC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	137, 328
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	4 cut(s)	17, 158, 230, 309
SfaNI	GCATC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	5 cut(s)	59, 141, 222, 299, 361
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	309
TasI	AATT	5 cut(s)	59, 141, 222, 299, 361
TatI	WGTACW	1 cut(s)	333
TscAI	CASTG	1 cut(s)	319
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.