Rh1BG140400

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
23415649 .. 23428877
13229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG140400.1

Sequence Viewer

Length: 1131 bp
ATGAGTAGCAGAGTGAAGCGTCGACGAAAACATGTGCCGTTGAAGGCATATTTGAGTTTACTTTCACCAGTTGTTAGTAGGTTATCGCACTCCAATAATATTTCTCGACTGTTGGAACTTTTCCTTGCATATGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGAAATTGGAGATTAGGTGCAATTTTTTTCCGAAAAGAGTTTACCTTAAACTACTTAATGGCAACATACAGTAAACCACAGGTTTCAATTCTGAATGGAATTGTCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGATTCCGTGTTGCAACTGAGAATTCGGTTTTCGCAATGCCAGAAACAGCTCTGGGACTTTTTCCAGATGTAGGTGCCTCTTATTATTTGTCCAGGCTTCCTGGATTCTTTGGAGAATATGTTGGTCTTACAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGAAGATTTATGCAAAGTTGATTCAAGTGAGTTCGCAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCAGCTCTAAAAGAGAAAAGTGCTTATTACCGGATGGATGTTATTGACAAGTGCTTTTCTAGAAGAACAGTGGAAGAAATTTTATCTGCCCTCGAGGAGGAGGTTGCAAAGAGGACAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGAGAAGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTTTGCGAGGAGAAGTCAGCAAGGATTTCAGAGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAGGAACCCAAAGTGGGAGCCTTCTAAATTGGAGCTCATCAATGATCATATGGTTGAGCAGTACTTCTTTAAGTTGGATGATGAAGAGTGGGAAGAGTTAAAGCTCCCTGCAAGATTCAACTTGCCCGTAACTGCCATTGCAAAGCTTTGA

Protein Analysis

376

Amino Acids

42.28

Weight (kDa)

8.87

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 34 - 349 1.6e-118 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 36 - 249 2.1e-22 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 749
AccB1I GGYRCC 2 cut(s) 443, 503
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 648
AcsI RAATTY 2 cut(s) 391, 735
AcuI CTGAAG 1 cut(s) 851
AfaI GTAC 1 cut(s) 1043
AfiI CCNNNNNNNGG 4 cut(s) 440, 567, 754, 994
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 8 cut(s) 43, 318, 584, 609, 629, 800, 832, 1099
AjnI CCWGG 2 cut(s) 461, 469
AluBI AGCT 7 cut(s) 419, 632, 662, 962, 1015, 1084, 1126
AluI AGCT 7 cut(s) 419, 632, 662, 962, 1015, 1084, 1126
Alw21I GWGCWC 1 cut(s) 1017
AlwI GGATC 1 cut(s) 648
Ama87I CYCGRG 1 cut(s) 749
ApeKI GCWGC 1 cut(s) 652
ApoI RAATTY 2 cut(s) 391, 735
AseI ATTAAT 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 907
AsuHPI GGTGA 4 cut(s) 57, 169, 209, 810
AvaI CYCGRG 1 cut(s) 749
BanI GGYRCC 2 cut(s) 443, 503
BanII GRGCYC 1 cut(s) 1017
Bbv12I GWGCWC 1 cut(s) 1017
BbvI GCAGC 1 cut(s) 664
BccI CCATC 3 cut(s) 368, 509, 685
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 463, 471
BclI TGATCA 1 cut(s) 1024
BfaI CTAG 1 cut(s) 717
BisI GCNGC 2 cut(s) 207, 653
BlsI GCNGC 2 cut(s) 208, 654
BmcAI AGTACT 1 cut(s) 1043
Bme1390I CCNGG 2 cut(s) 463, 471
BmeT110I CYCGRG 1 cut(s) 749
BmiI GGNNCC 4 cut(s) 445, 505, 986, 999
BmrFI CCNGG 2 cut(s) 463, 471
BmsI GCATC 3 cut(s) 130, 664, 824
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 687
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 474, 504
Bsc4I CCNNNNNNNGG 4 cut(s) 440, 567, 754, 994
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 2 cut(s) 411, 1116
BseBI CCWGG 2 cut(s) 463, 471
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 7 cut(s) 145, 360, 520, 655, 696, 700, 1063
BseLI CCNNNNNNNGG 4 cut(s) 440, 567, 754, 994
BseMI GCAATG 2 cut(s) 411, 1116
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 4 cut(s) 149, 767, 770, 939
BseXI GCAGC 1 cut(s) 664
BshNI GGYRCC 2 cut(s) 443, 503
BsiHKAI GWGCWC 1 cut(s) 1017
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 1 cut(s) 688
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 4 cut(s) 440, 567, 754, 994
BsmFI GGGAC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 1017
Bsp143I GATC 3 cut(s) 640, 845, 1024
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 445, 505, 986, 999
BspPI GGATC 1 cut(s) 648
BspQI GCTCTTC 1 cut(s) 172
BspT107I GGYRCC 2 cut(s) 443, 503
BsrDI GCAATG 2 cut(s) 411, 1116
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 3 cut(s) 640, 845, 1024
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 463, 471
Bst4CI ACNGT 3 cut(s) 111, 302, 727
Bst6I CTCTTC 3 cut(s) 172, 1059, 1068
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 364
BstENI CCTNNNNNAGG 2 cut(s) 565, 752
BstF5I GGATG 7 cut(s) 145, 360, 520, 655, 696, 700, 1063
BstKTI GATC 3 cut(s) 643, 848, 1027
BstMBI GATC 3 cut(s) 640, 845, 1024
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 2 cut(s) 463, 471
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 461, 469
BstV1I GCAGC 1 cut(s) 664
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 7 cut(s) 145, 360, 520, 655, 696, 700, 1063
BtsIMutI CAGTG 1 cut(s) 732
Cac8I GCNNGC 1 cut(s) 531
CseI GACGC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 1042
CviAII CATG 4 cut(s) 32, 337, 365, 914
CviQI GTAC 1 cut(s) 1042
DdeI CTNAG 1 cut(s) 387
DpnI GATC 3 cut(s) 642, 847, 1026
DpnII GATC 3 cut(s) 640, 845, 1024
Eam1104I CTCTTC 3 cut(s) 172, 1059, 1068
EarI CTCTTC 3 cut(s) 172, 1059, 1068
Ecl136II GAGCTC 1 cut(s) 1015
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 1017
Eco53kI GAGCTC 1 cut(s) 1015
Eco57I CTGAAG 1 cut(s) 851
Eco88I CYCGRG 1 cut(s) 749
EcoICRI GAGCTC 1 cut(s) 1015
EcoNI CCTNNNNNAGG 2 cut(s) 565, 752
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 461, 469
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 1017
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 4 cut(s) 35, 340, 368, 917
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 1 cut(s) 438
FatI CATG 4 cut(s) 31, 336, 364, 913
FauNDI CATATG 2 cut(s) 130, 1029
FbaI TGATCA 1 cut(s) 1024
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 207, 653
FokI GGATG 7 cut(s) 152, 347, 527, 642, 703, 707, 1070
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 2 cut(s) 207, 653
FspBI CTAG 1 cut(s) 717
GluI GCNGC 2 cut(s) 207, 653
HapII CCGG 1 cut(s) 688
HgaI GACGC 1 cut(s) 8
Hin1II CATG 4 cut(s) 35, 340, 368, 917
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 1124
HinfI GANTC 5 cut(s) 160, 372, 474, 605, 1095
HpaII CCGG 1 cut(s) 688
HphI GGTGA 4 cut(s) 57, 169, 209, 810
Hpy166II GTNNAC 4 cut(s) 23, 59, 273, 305
Hpy188I TCNGA 3 cut(s) 263, 324, 947
Hpy188III TCNNGA 6 cut(s) 105, 218, 434, 581, 717, 893
Hpy8I GTNNAC 4 cut(s) 23, 59, 273, 305
Hpy99I CGWCG 2 cut(s) 24, 27
HpyAV CCTTC 5 cut(s) 37, 224, 851, 855, 1011
HpyCH4III ACNGT 3 cut(s) 111, 302, 727
HpyCH4V TGCA 9 cut(s) 128, 251, 383, 545, 597, 764, 957, 1091, 1121
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 387
Hsp92II CATG 4 cut(s) 35, 340, 368, 917
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 3 cut(s) 640, 845, 1024
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 997, 1012, 1089
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 3 cut(s) 130, 664, 824
MaeI CTAG 1 cut(s) 717
MaeIII GTNAC 1 cut(s) 1108
MalI GATC 3 cut(s) 642, 847, 1026
MboI GATC 3 cut(s) 640, 845, 1024
MboII GAAGA 8 cut(s) 189, 596, 599, 732, 743, 844, 1076, 1085
MhlI GDGCHC 1 cut(s) 1017
MmeI TCCRAC 3 cut(s) 93, 951, 1035
MroXI GAANNNNTTC 1 cut(s) 907
MseI TTAA 5 cut(s) 225, 278, 287, 1050, 1079
MspI CCGG 1 cut(s) 688
MspR9I CCNGG 2 cut(s) 463, 471
MvaI CCWGG 2 cut(s) 463, 471
MwoI GCNNNNNNNGC 1 cut(s) 188
NcoI CCATGG 1 cut(s) 364
NdeI CATATG 2 cut(s) 130, 1029
NdeII GATC 3 cut(s) 640, 845, 1024
NlaIII CATG 4 cut(s) 35, 340, 368, 917
NlaIV GGNNCC 4 cut(s) 445, 505, 986, 999
NspI RCATGY 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 749
PciI ACATGT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 907
PfeI GAWTC 5 cut(s) 160, 372, 474, 605, 1095
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 2 cut(s) 208, 654
PscI ACATGT 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 1017
Psp6I CCWGG 2 cut(s) 461, 469
PspGI CCWGG 2 cut(s) 461, 469
PspN4I GGNNCC 4 cut(s) 445, 505, 986, 999
PspXI VCTCGAGB 1 cut(s) 749
RsaI GTAC 1 cut(s) 1043
RsaNI GTAC 1 cut(s) 1042
SacI GAGCTC 1 cut(s) 1017
SalI GTCGAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 5 cut(s) 225, 278, 287, 1050, 1079
SatI GCNGC 2 cut(s) 207, 653
Sau3AI GATC 3 cut(s) 640, 845, 1024
ScaI AGTACT 1 cut(s) 1043
ScrFI CCNGG 2 cut(s) 463, 471
SduI GDGCHC 1 cut(s) 1017
SfaNI GCATC 3 cut(s) 130, 664, 824
Sfr274I CTCGAG 1 cut(s) 749
SgrDI CGTCGACG 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 749
SmlI CTYRAG 2 cut(s) 164, 749
SmoI CTYRAG 2 cut(s) 164, 749
SsiI CCGC 1 cut(s) 206
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 717
SstI GAGCTC 1 cut(s) 1017
StyD4I CCNGG 2 cut(s) 461, 469
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 111, 302, 727
TaqI TCGA 4 cut(s) 22, 106, 750, 788
TatI WGTACW 1 cut(s) 1041
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 5 cut(s) 160, 372, 474, 605, 1095
Tru1I TTAA 5 cut(s) 225, 278, 287, 1050, 1079
Tru9I TTAA 5 cut(s) 225, 278, 287, 1050, 1079
TscAI CASTG 1 cut(s) 732
TseI GCWGC 1 cut(s) 652
TspDTI ATGAA 2 cut(s) 243, 1077
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 732
VspI ATTAAT 1 cut(s) 225
XagI CCTNNNNNAGG 2 cut(s) 565, 752
XapI RAATTY 2 cut(s) 391, 735
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 749
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 907
XspI CTAG 1 cut(s) 717
ZrmI AGTACT 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.