Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011699.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

20967 .. 21882

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011699.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggctcatcatctctataatggcgacttgagatttgttgctaaaccttctgaggatgcgtataagttactatacttgatagcaacatacagtaaaccccaggtttcagttctcaatggaatttccttaggtggatccgcaattagtagatcctgtagatttcgtattgcaactgagaattcaatgttttctatgccagaaacagctttgggagggtttcttgatgcgggtgcctcttacttcttgtcaaggcttcctggattctttggagaatatgttggcctaactggtgccaaattggatggtcttgaaatgcttgcatgcttacgttctagcaactcattttgttcctcaaccaaattggctttgttagaagaagttctatcacttcaaaaggcatcgctaacaagtttgaaactttgtttgagatcaattagagaaggaaggtttcaaggacttggtgaatgtcttgctcaagagtatagaatagcgtttcatcttatgcgaggaaaaattaggtcagacttcagagatggttgcacaactatattgtcaaaaaaggataacatccaaaagtgggagccttgtaaattggagctcatcactgaccacatggttgatcagtacttcttgaagttggatgatgacgaaaatttggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

220

Amino Acids

24.59

Weight (kDa)

6.89

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	230, 290
AciI	CCGC	2 cut(s)	138, 227
AclWI	GGATC	3 cut(s)	129, 142, 144
AcsI	RAATTY	3 cut(s)	120, 178, 652
AcuI	CTGAAG	1 cut(s)	511
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	6 cut(s)	183, 311, 392, 415, 452, 634
AjnI	CCWGG	2 cut(s)	99, 256
AluBI	AGCT	2 cut(s)	206, 598
AluI	AGCT	2 cut(s)	206, 598
Alw21I	GWGCWC	1 cut(s)	600
AlwI	GGATC	3 cut(s)	129, 142, 144
AoxI	GGCC	1 cut(s)	280
ApoI	RAATTY	3 cut(s)	120, 178, 652
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	473
AxyI	CCTNAGG	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	230, 290
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	600
BccI	CCATC	2 cut(s)	296, 527
BciT130I	CCWGG	2 cut(s)	101, 258
BclI	TGATCA	1 cut(s)	619
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	154
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	2 cut(s)	101, 258
BmiI	GGNNCC	4 cut(s)	136, 232, 292, 582
BmrFI	CCNGG	2 cut(s)	101, 258
BmsI	GCATC	3 cut(s)	46, 214, 407
BpuEI	CTTGAG	2 cut(s)	49, 459
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	101, 258
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	4 cut(s)	61, 307, 567, 646
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	2 cut(s)	42, 165
BseNI	ACTGG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	2 cut(s)	230, 290
BsiHKAI	GWGCWC	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	577
BsnI	GGCC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	134, 149, 428, 619
BspACI	CCGC	2 cut(s)	138, 227
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	43, 166
BspLI	GGNNCC	4 cut(s)	136, 232, 292, 582
BspPI	GGATC	3 cut(s)	129, 142, 144
BspT107I	GGYRCC	2 cut(s)	230, 290
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	4 cut(s)	134, 149, 428, 619
Bst2UI	CCWGG	2 cut(s)	101, 258
Bst4CI	ACNGT	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	318, 322
BstDEI	CTNAG	3 cut(s)	51, 127, 174
BstF5I	GGATG	4 cut(s)	61, 307, 567, 646
BstKTI	GATC	4 cut(s)	137, 152, 431, 622
BstMBI	GATC	4 cut(s)	134, 149, 428, 619
BstNI	CCWGG	2 cut(s)	101, 258
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	99, 256
BstSFI	CTRYAG	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	134, 149
BstYI	RGATCY	2 cut(s)	134, 149
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	4 cut(s)	61, 307, 567, 646
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	318, 322
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	2 cut(s)	321, 613
CviJI	RGCY	7 cut(s)	5, 206, 253, 282, 365, 583, 598
CviKI_1	RGCY	7 cut(s)	5, 206, 253, 282, 365, 583, 598
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	3 cut(s)	51, 127, 174
DpnI	GATC	4 cut(s)	136, 151, 430, 621
DpnII	GATC	4 cut(s)	134, 149, 428, 619
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	511
Eco81I	CCTNAGG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	99, 256
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	2 cut(s)	324, 616
FatI	CATG	2 cut(s)	320, 612
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	619
FokI	GGATG	4 cut(s)	68, 314, 554, 653
FriOI	GRGCYC	1 cut(s)	600
FspBI	CTAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	324, 616
HinfI	GANTC	1 cut(s)	261
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	3 cut(s)	52, 523, 530
Hpy188III	TCNNGA	4 cut(s)	221, 308, 476, 631
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	57, 434, 438
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	170, 320, 540
HpyF3I	CTNAG	3 cut(s)	51, 127, 174
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	2 cut(s)	324, 616
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	134, 149, 428, 619
LmnI	GCTCC	2 cut(s)	580, 595
LpnPI	CCDG	7 cut(s)	86, 113, 166, 210, 243, 270, 273
LweI	GCATC	3 cut(s)	46, 214, 407
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	4 cut(s)	136, 151, 430, 621
MboI	GATC	4 cut(s)	134, 149, 428, 619
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	2 cut(s)	134, 149
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	9 cut(s)	120, 141, 178, 296, 359, 432, 513, 590, 652
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	5 cut(s)	46, 206, 244, 361, 500
MroXI	GAANNNNTTC	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	101, 258
MvaI	CCWGG	2 cut(s)	101, 258
NdeII	GATC	4 cut(s)	134, 149, 428, 619
NlaIII	CATG	2 cut(s)	324, 616
NlaIV	GGNNCC	4 cut(s)	136, 232, 292, 582
NspI	RCATGY	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	261
PfoI	TCCNGGA	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	99, 256
PspGI	CCWGG	2 cut(s)	99, 256
PspN4I	GGNNCC	4 cut(s)	136, 232, 292, 582
PsuI	RGATCY	2 cut(s)	134, 149
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
SacI	GAGCTC	1 cut(s)	600
Sau3AI	GATC	4 cut(s)	134, 149, 428, 619
ScaI	AGTACT	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	101, 258
SduI	GDGCHC	1 cut(s)	600
SetI	ASST	8 cut(s)	49, 105, 133, 208, 331, 449, 521, 600
SfaNI	GCATC	3 cut(s)	46, 214, 407
SfcI	CTRYAG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	28, 474
SmoI	CTYRAG	2 cut(s)	28, 474
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	9 cut(s)	120, 141, 178, 296, 359, 432, 513, 590, 652
SsiI	CCGC	2 cut(s)	138, 227
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	99, 256
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	331
TasI	AATT	9 cut(s)	120, 141, 178, 296, 359, 432, 513, 590, 652
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	3 cut(s)	120, 178, 652
XceI	RCATGY	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.