Rh1CG151300

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
33568150 .. 33569687
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG151300.1

Sequence Viewer

Length: 1200 bp
ATGGCTTCTTTCAGCTCAGATCATCATGATCATGGGAATTCAGAGATTTTAGTACAAGAGAATAATCCATTCATTAGGACATTGACACTCCACAGGCCTCAAAAATTGAATGTTATCTCCACTCCCATGCTCTTGCAGTTGTTTGAGCAGTTCCTCAACTATGAGCACGATGCCTTTGTCAGGTTAGTCATTCTCAAAGGTAGCGGAAAAGCTTTTTCTGTCGGTGGTGATGTTGCTTATATAGCACGTCATCTCTACAATGGCAATTCGAGACATGCTCTCAAATTGTTCAAAATTGGATACACTCTAATGTATTTCCTAGCAACAAAAACTACCCTGCAAGTTTCATTTCTTAATGGAATCACTATGGGGATCGGGGCAGGTGTTTCTATACACGGTAGCTTTCGTGTAGCAACAGAGAAGACAGTGTTTGCTATGCCGGAAACAGCTATTGGATTTTTTCCTGATGTTGGTTCCTCTTACTACCTTTCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCAGAAATGCTTGCAGTGGGTCTAGCAACTCACTATGTTCCCTCATCTAAATTGGGTTTGCTAGAAGAAGCCCTAATAAGAAAACTAGGTGCTTCTTCAACTAATACAAGCTTAACTGATGATTATGCTATTATTTCAGCTATTCTAGATGAATACTCTGAGCAACCAGCTCCAAAAATGAAGAGTGCTTACCGCTATATGGATGTTATTGACAAGTGCTTTTCTCAATCAATAGTGGAAGAAATATTAAGTAGCCTAGAAAAGGAGCTTGCTACCATAATCAACATAACTGATCACCATGAATGGTTATCGTCAGCAATTCAGTCACTAAGACAGGCATCACCAACAAGTTTGAAGATTGCTTTAAGATCGATTCGAGGAGGAAGGAGGCTTCACGGAGTTGGCGAGTGCATTGTTCGCGAATATAGAATTGTTTATCATGTTTTCCGTGGGGAAATCAGCAAGGACTTCATGGAGGGTTGCAGGGCTATGTTGTTAGACAAAGATAAGAACCCAAAGTGGAAGCCTTCTAGATTGGAGCTCGTCACAGACCAGATGGTTGAGCACTACTTCTCTAGGTTGGGTGATGACGAAGAATTAAAGCTCCCTCAAACATTCAATTTGCCTCTCACTGCCATTTCCAAGATTTGA

Protein Analysis

399

Amino Acids

44.67

Weight (kDa)

6.93

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 25 - 374 1.6e-109 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 25 - 214 1.5e-21 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 533
AccII CGCG 1 cut(s) 969
AciI CCGC 2 cut(s) 204, 742
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 4 cut(s) 180, 470, 748, 811
AgsI TTSAA 6 cut(s) 109, 292, 492, 648, 904, 1168
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 435, 467
Alw21I GWGCWC 3 cut(s) 168, 1092, 1116
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 1 cut(s) 380
AoxI GGCC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 4 cut(s) 239, 836, 882, 1145
AvaII GGWCC 1 cut(s) 548
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 1 cut(s) 1092
BarI GAAGNNNNNNTAC 2 cut(s) 722, 754
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 3 cut(s) 168, 1092, 1116
BccI CCATC 1 cut(s) 1099
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 2 cut(s) 28, 841
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 8 cut(s) 320, 572, 611, 635, 695, 806, 1080, 1125
BfuAI ACCTGC 1 cut(s) 371
BfuI GTATCC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 548
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 2 cut(s) 475, 535
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 160, 896
BpiI GAAGAC 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 262, 294
Bsa29I ATCGAT 1 cut(s) 920
BsaJI CCNNGG 1 cut(s) 997
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 470, 748, 811
BseBI CCWGG 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 920
BseDI CCNNGG 1 cut(s) 997
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 4 cut(s) 180, 470, 748, 811
BseMII CTCAG 2 cut(s) 30, 699
BseRI GAGGAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 969
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 533
BshVI ATCGAT 1 cut(s) 920
BsiHKAI GWGCWC 3 cut(s) 168, 1092, 1116
BsiSI CCGG 1 cut(s) 440
BslI CCNNNNNNNGG 4 cut(s) 180, 470, 748, 811
BsmAI GTCTC 1 cut(s) 265
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 3 cut(s) 168, 1092, 1116
Bsp143I GATC 5 cut(s) 19, 28, 372, 841, 917
Bsp68I TCGCGA 1 cut(s) 969
BspACI CCGC 2 cut(s) 204, 742
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 29, 700
BspDI ATCGAT 1 cut(s) 920
BspFNI CGCG 1 cut(s) 969
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 475, 535
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 997
BssMI GATC 5 cut(s) 19, 28, 372, 841, 917
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 3 cut(s) 398, 427, 548
Bst6I CTCTTC 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 561, 819
BstDEI CTNAG 3 cut(s) 16, 708, 878
BstDSI CCRYGG 1 cut(s) 997
BstENI CCTNNNNNAGG 2 cut(s) 178, 809
BstF5I GGATG 1 cut(s) 757
BstFNI CGCG 1 cut(s) 969
BstKTI GATC 5 cut(s) 22, 31, 375, 844, 920
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 5 cut(s) 19, 28, 372, 841, 917
BstMWI GCNNNNNNNGC 2 cut(s) 242, 966
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 499
BstUI CGCG 1 cut(s) 969
BstV2I GAAGAC 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 920
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 97
BsuTUI ATCGAT 1 cut(s) 920
BtgI CCRYGG 1 cut(s) 997
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 757
BtsI GCAGTG 2 cut(s) 570, 1179
BtsIMutI CAGTG 3 cut(s) 432, 570, 1179
BtuMI TCGCGA 1 cut(s) 969
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 2 cut(s) 561, 819
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 920
Csp6I GTAC 1 cut(s) 53
CviAII CATG 7 cut(s) 26, 32, 127, 275, 848, 989, 1021
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 3 cut(s) 16, 708, 878
DpnI GATC 5 cut(s) 21, 30, 374, 843, 919
DpnII GATC 5 cut(s) 19, 28, 372, 841, 917
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Ecl136II GAGCTC 1 cut(s) 1090
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 1092
Eco47I GGWCC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 1090
EcoICRI GAGCTC 1 cut(s) 1090
EcoNI CCTNNNNNAGG 2 cut(s) 178, 809
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 1092
FaeI CATG 7 cut(s) 29, 35, 130, 278, 851, 992, 1024
FatI CATG 7 cut(s) 25, 31, 126, 274, 847, 988, 1020
FbaI TGATCA 2 cut(s) 28, 841
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 1 cut(s) 1092
FspBI CTAG 8 cut(s) 320, 572, 611, 635, 695, 806, 1080, 1125
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 440
Hin1II CATG 7 cut(s) 29, 35, 130, 278, 851, 992, 1024
HindIII AAGCTT 2 cut(s) 210, 658
HinfI GANTC 3 cut(s) 360, 504, 922
HpaII CCGG 1 cut(s) 440
HphI GGTGA 4 cut(s) 239, 836, 882, 1145
Hpy188I TCNGA 3 cut(s) 19, 43, 709
Hpy188III TCNNGA 8 cut(s) 26, 270, 464, 492, 551, 695, 968, 1080
HpyAV CCTTC 2 cut(s) 927, 1086
HpyCH4III ACNGT 3 cut(s) 398, 427, 548
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 5 cut(s) 136, 340, 563, 960, 1032
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 966
HpyF3I CTNAG 3 cut(s) 16, 708, 878
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 7 cut(s) 29, 35, 130, 278, 851, 992, 1024
Ksp22I TGATCA 2 cut(s) 28, 841
Kzo9I GATC 5 cut(s) 19, 28, 372, 841, 917
LmnI GCTCC 4 cut(s) 724, 814, 1087, 1158
LweI GCATC 2 cut(s) 160, 896
MaeI CTAG 8 cut(s) 320, 572, 611, 635, 695, 806, 1080, 1125
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 873, 1093
MalI GATC 5 cut(s) 21, 30, 374, 843, 919
MboI GATC 5 cut(s) 19, 28, 372, 841, 917
MboII GAAGA 7 cut(s) 433, 626, 636, 742, 800, 916, 1154
MhlI GDGCHC 3 cut(s) 168, 1092, 1116
MseI TTAA 5 cut(s) 354, 662, 797, 914, 1148
MslI CAYNNNNRTG 3 cut(s) 30, 125, 308
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 969
MwoI GCNNNNNNNGC 2 cut(s) 242, 966
NdeII GATC 5 cut(s) 19, 28, 372, 841, 917
NlaIII CATG 7 cut(s) 29, 35, 130, 278, 851, 992, 1024
NlaIV GGNNCC 2 cut(s) 475, 535
NmuCI GTSAC 2 cut(s) 873, 1093
NruI TCGCGA 1 cut(s) 969
NspI RCATGY 1 cut(s) 278
PagI TCATGA 1 cut(s) 25
PaqCI CACCTGC 1 cut(s) 371
PceI AGGCCT 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 951
PfeI GAWTC 3 cut(s) 360, 504, 922
PfoI TCCNGGA 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 1092
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 475, 535
PspPI GGNCC 1 cut(s) 548
RruI TCGCGA 1 cut(s) 969
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 3 cut(s) 30, 125, 308
SacI GAGCTC 1 cut(s) 1092
SaqAI TTAA 5 cut(s) 354, 662, 797, 914, 1148
Sau3AI GATC 5 cut(s) 19, 28, 372, 841, 917
Sau96I GGNCC 1 cut(s) 548
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 3 cut(s) 168, 1092, 1116
SfaNI GCATC 2 cut(s) 160, 896
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 3 cut(s) 30, 125, 308
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 2 cut(s) 204, 742
SspI AATATT 1 cut(s) 795
SspMI CTAG 8 cut(s) 320, 572, 611, 635, 695, 806, 1080, 1125
SstI GAGCTC 1 cut(s) 1092
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 3 cut(s) 398, 427, 548
TaiI ACGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 269, 920, 925
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 3 cut(s) 360, 504, 922
Tru1I TTAA 5 cut(s) 354, 662, 797, 914, 1148
Tru9I TTAA 5 cut(s) 354, 662, 797, 914, 1148
TscAI CASTG 3 cut(s) 432, 570, 1186
TseFI GTSAC 2 cut(s) 873, 1093
Tsp45I GTSAC 2 cut(s) 873, 1093
TspDTI ATGAA 6 cut(s) 61, 336, 714, 743, 864, 1009
TspGWI ACGGA 2 cut(s) 960, 986
TspRI CASTG 3 cut(s) 432, 570, 1186
VpaK11BI GGWCC 1 cut(s) 548
XagI CCTNNNNNAGG 2 cut(s) 178, 809
XapI RAATTY 1 cut(s) 37
XbaI TCTAGA 2 cut(s) 694, 1079
XceI RCATGY 1 cut(s) 278
XspI CTAG 8 cut(s) 320, 572, 611, 635, 695, 806, 1080, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.