Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000117.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

260957 .. 262030

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000117.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggtctcgcggttgtttgagctgttcctcaactacgagcatgatgcctttgtcaggttagtcattcttaaaggtagtggaaaaactttttctgcctgtgttgatgttgcgtatgtagcacatcatctctacaatggcaatttgagacctgctctcaaattgtttaaaactgcatacagcctaatgtatttgctagcaataaaaactacaccccaagtttcatttcttaatggaatcactatggggatcggggcaggtgtttctatacatggtgccagattggatggttctaaaatgcttgctttgggtctagcaactcactttgttcagtcatctaagttagctttgctagaagaagccctggcatcaccaacaagtttgaagattactttgagattgattcgaggtggaaggcaactgcgaggagttggtgagtgcattgtttttgagaataggattgtttgtcatgttttgtatggtgaaatcagcgaggactttatggagggttgcagagctatattgttggacaaagataagaacccaaagtggaaaccttctaaattggagctcgtcacggaccagatggttgagcactacttctctaggttagaatatgacgatgaattaaagctccctcaaatattcaatttacctgtcattgccatttccaagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

225

Amino Acids

25.16

Weight (kDa)

8.82

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	2 cut(s)	157, 245
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	10
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	382, 646
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	5 cut(s)	22, 344, 515, 568, 631
AluI	AGCT	5 cut(s)	22, 344, 515, 568, 631
Alw21I	GWGCWC	2 cut(s)	570, 594
Alw26I	GTCTC	2 cut(s)	10, 139
AlwI	GGATC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	3 cut(s)	360, 443, 491
AsuNHI	GCTAGC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	570, 594
BccI	CCATC	2 cut(s)	278, 577
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	10, 139
BfaI	CTAG	4 cut(s)	194, 311, 350, 603
BfuAI	ACCTGC	2 cut(s)	157, 245
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	34, 374
BmtI	GCTAGC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BsaI	GGTCTC	2 cut(s)	10, 139
BsaJI	CCNNGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	570, 594
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	10, 139
Bso31I	GGTCTC	2 cut(s)	10, 139
Bsp1286I	GDGCHC	2 cut(s)	570, 594
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	274
BspMI	ACCTGC	2 cut(s)	157, 245
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	2 cut(s)	10, 139
BsrDI	GCAATG	1 cut(s)	657
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	195, 300
BstDEI	CTNAG	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	10, 139
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	289
BveI	ACCTGC	2 cut(s)	157, 245
Cac8I	GCNNGC	2 cut(s)	195, 300
Cfr13I	GGNCC	1 cut(s)	577
CviAII	CATG	3 cut(s)	41, 269, 467
CviJI	RGCY	7 cut(s)	22, 180, 344, 359, 515, 568, 631
CviKI_1	RGCY	7 cut(s)	22, 180, 344, 359, 515, 568, 631
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraI	TTTAAA	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco31I	GGTCTC	2 cut(s)	10, 139
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	568
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	570
FaeI	CATG	3 cut(s)	44, 272, 470
FatI	CATG	3 cut(s)	40, 268, 466
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	570
FspBI	CTAG	4 cut(s)	194, 311, 350, 603
Hin1II	CATG	3 cut(s)	44, 272, 470
HinfI	GANTC	2 cut(s)	234, 400
HphI	GGTGA	3 cut(s)	360, 443, 491
HpyAV	CCTTC	2 cut(s)	405, 564
HpyCH4V	TGCA	3 cut(s)	173, 438, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	44, 272, 470
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	565, 636
LpnPI	CCDG	9 cut(s)	40, 109, 162, 240, 289, 347, 374, 593, 666
LweI	GCATC	2 cut(s)	34, 374
MaeI	CTAG	4 cut(s)	194, 311, 350, 603
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	365, 394
MhlI	GDGCHC	2 cut(s)	570, 594
MluCI	AATT	5 cut(s)	139, 158, 560, 623, 646
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	6 cut(s)	38, 398, 416, 484, 496, 645
MseI	TTAA	4 cut(s)	69, 165, 228, 626
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	246
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	44, 272, 470
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	571
PaqCI	CACCTGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	234, 400
Psp124BI	GAGCTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	4 cut(s)	69, 165, 228, 626
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	570, 594
SfaNI	GCATC	2 cut(s)	34, 374
SinI	GGWCC	1 cut(s)	577
Sse9I	AATT	5 cut(s)	139, 158, 560, 623, 646
SsiI	CCGC	1 cut(s)	10
SspI	AATATT	1 cut(s)	642
SspMI	CTAG	4 cut(s)	194, 311, 350, 603
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	360
TaqI	TCGA	1 cut(s)	403
TasI	AATT	5 cut(s)	139, 158, 560, 623, 646
TfiI	GAWTC	2 cut(s)	234, 400
Tru1I	TTAA	4 cut(s)	69, 165, 228, 626
Tru9I	TTAA	4 cut(s)	69, 165, 228, 626
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	2 cut(s)	210, 636
TspGWI	ACGGA	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	52
XspI	CTAG	4 cut(s)	194, 311, 350, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.