Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

40267211 .. 40268392

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTTCTTTCATCAACTCCGATCAAGATGATCCACTTTTGATACAACAGAATTTGTTTGCGAGGATATTGACACTAAACATGCCTCGACAACTGAACGCTCTCTCCTCCAAAATTTATTCTCCGCTGTCCCAACTATTCCAAGCCTACGAGGACGATGCCAATGTCAAGTTGGTCATTCTCAAAGGCAAAGGAAGAGCGTTTTGTGCCGGCGGTGATGTGGCAGCGGTGGCTCGTCATCTTTTCGAAGGCAACTGGAGATTTGGCGCACAACATGGTAAAAGAGTGTATACCTTAGGCAACTTGATAGCAACAAACACTACGCCCCAGATTTCCGTGCTCAATGGAATTGTCATGGGAGGTGGAGCTGGAATTTCTATACACGGTAGGTTTCGTGTAGCAACTGAGAACTCGGTGTTTGCTATGCCGGAAAAAGCTATTGGGTTGTTTCCAGATTTAGGTGCCTCTTATTTTTTGTCAAGGCTTCCTGGATTCTTTGGAGAATATCTTGGTCTTACTGGTGCTAGATTGGACGGTCCTGAAATGCTCGCTTGTGGTTTAGCAACTCACTTTGTTCCCTCAGCCAAATTGGCCTCGTTAGAAGAAGCTCTAGTATCAAAAATTGCTTCAAAAAATATATCAAGCAGTGACCTTGTTGATAATATTTCAGCTATTATTAATGAATACTCGATTCAACCAGCTATAAAAGAGAAAAGTGCTTGCCACAAAATGGATGTTATTGACGAGTGCTTTTCTAAGGGAACAGTGGAGGAAATTTTAAGTGTTCTTGAGAAGAAGCTTGCTACCATTGGTTTAAATGGTCGTGAATGGTTGTCTTCATCGATTGAATCCCTGAAAAAGGCATCGCCGATAAGTTTGAAGATTACATTGAGATCGATTCGAGAAGGAAGGATGCAAGGAGTTGGCGAGTGCCTTGTTCGTGAGTACAGAATGTTTTGCCATGTTATGAGAGGGGAAATCAGCAAGGATTTCAGGGAGGGTTGTAGAGCTATATTGTTGGATAAGGATAAGAACCCGAAATGGGAGCCTTCTAAGTTGGAGCTCATCACTGATGAGATGGTTGATCACTACTTCTCGAAGTTAGATGATGATGAAGAATGGGAAGAGTTAAAGCTGCCTGAAAGATCTAATTTGTATGGTATTGCCATTGCCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

393

Amino Acids

43.4

Weight (kDa)

6.22

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	22 - 365	1.9e-116	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	24 - 217	1.4e-29	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	3 cut(s)	125, 213, 227
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	4 cut(s)	52, 114, 372, 774
AfaI	GTAC	1 cut(s)	947
AfiI	CCNNNNNNNGG	4 cut(s)	458, 730, 859, 1042
AgsI	TTSAA	4 cut(s)	630, 695, 848, 880
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
Alw21I	GWGCWC	2 cut(s)	342, 1065
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	2 cut(s)	224, 1135
ApoI	RAATTY	4 cut(s)	52, 114, 372, 774
AseI	ATTAAT	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	536
AxyI	CCTNAGG	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	1065
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	2 cut(s)	342, 1065
BbvCI	CCTCAGC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	236, 1122
BccI	CCATC	1 cut(s)	1072
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	489
BclI	TGATCA	1 cut(s)	1084
BfaI	CTAG	2 cut(s)	525, 611
BglI	GCCNNNNNGGC	1 cut(s)	590
BglII	AGATCT	1 cut(s)	1145
BisI	GCNGC	2 cut(s)	225, 1136
BlsI	GCNGC	2 cut(s)	226, 1137
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	2 cut(s)	463, 1047
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	3 cut(s)	148, 872, 903
BpiI	GAAGAC	1 cut(s)	828
BpmI	CTGGAG	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	580
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	809
Bsa29I	ATCGAT	2 cut(s)	842, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	458, 730, 859, 1042
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	260, 523
Bse21I	CCTNAGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	1167
BseBI	CCWGG	1 cut(s)	489
BseCI	ATCGAT	2 cut(s)	842, 896
BseGI	GGATG	2 cut(s)	739, 918
BseLI	CCNNNNNNNGG	4 cut(s)	458, 730, 859, 1042
BseMI	GCAATG	1 cut(s)	1167
BseMII	CTCAG	2 cut(s)	396, 594
BseNI	ACTGG	2 cut(s)	260, 523
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	236, 1122
BshFI	GGCC	1 cut(s)	593
BshNI	GGYRCC	1 cut(s)	461
BshVI	ATCGAT	2 cut(s)	842, 896
BsiHKAI	GWGCWC	2 cut(s)	342, 1065
BsiSI	CCGG	2 cut(s)	210, 428
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	4 cut(s)	458, 730, 859, 1042
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	593
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	342, 1065
Bsp143I	GATC	5 cut(s)	22, 31, 893, 1084, 1145
BspACI	CCGC	3 cut(s)	125, 213, 227
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	2 cut(s)	397, 593
BspDI	ATCGAT	2 cut(s)	842, 896
BspLI	GGNNCC	2 cut(s)	463, 1047
BspPI	GGATC	1 cut(s)	26
BspQI	GCTCTTC	1 cut(s)	190
BspT104I	TTCGAA	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	1167
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	260, 523
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	5 cut(s)	22, 31, 893, 1084, 1145
BssNAI	GTATAC	1 cut(s)	291
Bst1107I	GTATAC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	3 cut(s)	386, 536, 766
Bst6I	CTCTTC	2 cut(s)	190, 1119
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	4 cut(s)	211, 549, 721, 801
BstDEI	CTNAG	5 cut(s)	295, 405, 580, 756, 1053
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	739, 918
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	25, 34, 896, 1087, 1148
BstMBI	GATC	5 cut(s)	22, 31, 893, 1084, 1145
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 230, 590
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	236, 1122
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	1145
BstYI	RGATCY	1 cut(s)	1145
BstZ17I	GTATAC	1 cut(s)	291
Bsu15I	ATCGAT	2 cut(s)	842, 896
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	593
BsuTUI	ATCGAT	2 cut(s)	842, 896
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	2 cut(s)	739, 918
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	3 cut(s)	652, 771, 1068
Cac8I	GCNNGC	4 cut(s)	211, 549, 721, 801
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	536
ClaI	ATCGAT	2 cut(s)	842, 896
Csp6I	GTAC	1 cut(s)	946
CviAII	CATG	4 cut(s)	82, 275, 355, 962
CviQI	GTAC	1 cut(s)	946
DdeI	CTNAG	5 cut(s)	295, 405, 580, 756, 1053
DpnI	GATC	5 cut(s)	24, 33, 895, 1086, 1147
DpnII	GATC	5 cut(s)	22, 31, 893, 1084, 1145
DraI	TTTAAA	1 cut(s)	816
Eam1104I	CTCTTC	2 cut(s)	190, 1119
EarI	CTCTTC	2 cut(s)	190, 1119
Ecl136II	GAGCTC	1 cut(s)	1063
Eco24I	GRGCYC	1 cut(s)	1065
Eco47I	GGWCC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	1063
Eco81I	CCTNAGG	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	1063
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoRII	CCWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	1065
FaeI	CATG	4 cut(s)	85, 278, 358, 965
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	81, 274, 354, 961
FbaI	TGATCA	1 cut(s)	1084
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	225, 1136
FokI	GGATG	2 cut(s)	746, 925
FriOI	GRGCYC	1 cut(s)	1065
Fsp4HI	GCNGC	2 cut(s)	225, 1136
FspBI	CTAG	2 cut(s)	525, 611
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	2 cut(s)	225, 1136
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	593
HapII	CCGG	2 cut(s)	210, 428
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	85, 278, 358, 965
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	2 cut(s)	797, 1175
HinfI	GANTC	4 cut(s)	492, 691, 848, 898
HpaII	CCGG	2 cut(s)	210, 428
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	8 cut(s)	26, 452, 539, 788, 824, 902, 941, 1096
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	4 cut(s)	242, 899, 903, 1059
HpyCH4III	ACNGT	3 cut(s)	386, 536, 766
HpyCH4V	TGCA	1 cut(s)	916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 230, 590
HpyF3I	CTNAG	5 cut(s)	295, 405, 580, 756, 1053
Hsp92II	CATG	4 cut(s)	85, 278, 358, 965
HspAI	GCGC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	1084
Kzo9I	GATC	5 cut(s)	22, 31, 893, 1084, 1145
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	3 cut(s)	365, 1045, 1060
Lsp1109I	GCAGC	2 cut(s)	236, 1122
LweI	GCATC	3 cut(s)	148, 872, 903
MaeI	CTAG	2 cut(s)	525, 611
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	5 cut(s)	24, 33, 895, 1086, 1147
MboI	GATC	5 cut(s)	22, 31, 893, 1084, 1145
MboII	GAAGA	7 cut(s)	207, 614, 805, 828, 892, 1127, 1136
MflI	RGATCY	1 cut(s)	1145
MhlI	GDGCHC	2 cut(s)	342, 1065
MluCI	AATT	8 cut(s)	52, 114, 348, 372, 587, 621, 774, 1150
MmeI	TCCRAC	2 cut(s)	999, 1038
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	5 cut(s)	678, 779, 815, 1130, 1180
MspA1I	CMGCKG	2 cut(s)	127, 227
MspI	CCGG	2 cut(s)	210, 428
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	3 cut(s)	206, 230, 590
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	5 cut(s)	22, 31, 893, 1084, 1145
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	4 cut(s)	85, 278, 358, 965
NlaIV	GGNNCC	2 cut(s)	463, 1047
NmuCI	GTSAC	1 cut(s)	647
NspI	RCATGY	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	4 cut(s)	492, 691, 848, 898
PflMI	CCANNNNNTGG	1 cut(s)	730
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	226, 1137
PshBI	ATTAAT	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	1065
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	463, 1047
PspPI	GGNCC	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	1145
RsaI	GTAC	1 cut(s)	947
RsaNI	GTAC	1 cut(s)	946
SacI	GAGCTC	1 cut(s)	1065
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	5 cut(s)	678, 779, 815, 1130, 1180
SatI	GCNGC	2 cut(s)	225, 1136
Sau3AI	GATC	5 cut(s)	22, 31, 893, 1084, 1145
Sau96I	GGNCC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	2 cut(s)	342, 1065
SfaNI	GCATC	3 cut(s)	148, 872, 903
SfuI	TTCGAA	1 cut(s)	246
SinI	GGWCC	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	8 cut(s)	52, 114, 348, 372, 587, 621, 774, 1150
SsiI	CCGC	3 cut(s)	125, 213, 227
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	2 cut(s)	525, 611
SstI	GAGCTC	1 cut(s)	1065
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	386, 536, 766
TaqI	TCGA	7 cut(s)	88, 246, 689, 842, 896, 901, 1097
TasI	AATT	8 cut(s)	52, 114, 348, 372, 587, 621, 774, 1150
TatI	WGTACW	1 cut(s)	945
TfiI	GAWTC	4 cut(s)	492, 691, 848, 898
Tru1I	TTAA	5 cut(s)	678, 779, 815, 1130, 1180
Tru9I	TTAA	5 cut(s)	678, 779, 815, 1130, 1180
TscAI	CASTG	3 cut(s)	652, 771, 1075
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	224, 1135
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	696, 828, 1128
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	652, 771, 1075
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	536
VspI	ATTAAT	1 cut(s)	678
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	4 cut(s)	52, 114, 372, 774
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	2 cut(s)	525, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.