FvH4_1g29436

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000863
Physical Location & Seq
Forward (+)
22531812 .. 22532168
357 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29436.t1

Sequence Viewer

Length: 357 bp
ATGACCATCCTGGAACAACAGATAAATGTCAGGACATATACTTCATCCCACAGGCCATACATTACACAAGCCATGCAAGCCGAACCCTTTACCACTCGCATCCAGGTTGAGAAGAAACCCCCTGAGGCAAAGCCCTTCAAGATCAAGAAATATAACGGTACCGGGTGTCTGTATCTCTATCTTGAACTATTTCAGTCTCAGTTAGATTCCACTCGCTGCACAGATGCACAGGCGTGTCATGCTTTTCAAGAGACACTAAGCGAGGAAGCTTTAAGCTGGTTCTTACGCCTTCCGACATATTCCATTGATAGCTATGAACGATTGACACAAAATTTCGTCACCGTTTCATTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

119

Amino Acids

13.76

Weight (kDa)

6.72

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 331
AfaI GTAC 1 cut(s) 160
AgsI TTSAA 3 cut(s) 139, 185, 248
AjnI CCWGG 2 cut(s) 9, 102
AleI CACNNNNGTG 1 cut(s) 232
AluBI AGCT 3 cut(s) 269, 276, 312
AluI AGCT 3 cut(s) 269, 276, 312
Alw26I GTCTC 2 cut(s) 201, 245
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 331
Asp700I GAANNNNTTC 1 cut(s) 189
Asp718I GGTACC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 123
BanI GGYRCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 2 cut(s) 11, 104
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 201, 245
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 3 cut(s) 11, 104, 163
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 3 cut(s) 11, 104, 163
BmsI GCATC 2 cut(s) 108, 214
BpuMI CCSGG 1 cut(s) 163
Bse21I CCTNAGG 1 cut(s) 123
BseBI CCWGG 2 cut(s) 11, 104
BseGI GGATG 3 cut(s) 6, 44, 99
BseMII CTCAG 2 cut(s) 114, 212
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 201, 245
BsnI GGCC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 141
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 2 cut(s) 115, 211
BspLI GGNNCC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 158
BssMI GATC 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 11, 104
Bst4CI ACNGT 2 cut(s) 158, 343
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 123, 198, 257
BstF5I GGATG 3 cut(s) 6, 44, 99
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 201, 245
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 77, 239
BstNI CCWGG 2 cut(s) 11, 104
BstSCI CCNGG 3 cut(s) 9, 102, 161
BstV1I GCAGC 1 cut(s) 203
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 3 cut(s) 6, 44, 99
Cac8I GCNNGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 159
CviAII CATG 2 cut(s) 73, 239
CviJI RGCY 7 cut(s) 55, 71, 80, 133, 269, 276, 312
CviKI_1 RGCY 7 cut(s) 55, 71, 80, 133, 269, 276, 312
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 3 cut(s) 123, 198, 257
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 9, 102
FaeI CATG 2 cut(s) 76, 242
FaiI YATR 8 cut(s) 37, 39, 58, 74, 153, 240, 298, 315
FatI CATG 2 cut(s) 72, 238
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 2 cut(s) 31, 86
Fsp4HI GCNGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 55
HapII CCGG 1 cut(s) 162
Hin1II CATG 2 cut(s) 76, 242
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 6 cut(s) 31, 139, 145, 182, 248, 354
HpyAV CCTTC 2 cut(s) 145, 299
HpyCH4III ACNGT 2 cut(s) 158, 343
HpyCH4V TGCA 3 cut(s) 76, 219, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 239
HpyF3I CTNAG 3 cut(s) 123, 198, 257
Hsp92II CATG 2 cut(s) 76, 242
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 9 cut(s) 16, 23, 37, 89, 116, 135, 175, 215, 262
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 2 cut(s) 108, 214
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 1 cut(s) 124
MluCI AATT 1 cut(s) 331
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 2 cut(s) 118, 256
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 232
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 3 cut(s) 11, 104, 163
MvaI CCWGG 2 cut(s) 11, 104
MwoI GCNNNNNNNGC 2 cut(s) 77, 239
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 76, 242
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 9
PkrI GCNGC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 9, 102
PspGI CCWGG 2 cut(s) 9, 102
PspN4I GGNNCC 1 cut(s) 160
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 232
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 141
ScrFI CCNGG 3 cut(s) 11, 104, 163
SetI ASST 4 cut(s) 108, 271, 278, 314
SfaNI GCATC 2 cut(s) 108, 214
SmiMI CAYNNNNRTG 1 cut(s) 232
Sse9I AATT 1 cut(s) 331
StyD4I CCNGG 3 cut(s) 9, 102, 161
TaaI ACNGT 2 cut(s) 158, 343
TasI AATT 1 cut(s) 331
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 3 cut(s) 33, 330, 336
XapI RAATTY 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.