Rmu_sc0003895.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003895.1
OG0000863
Physical Location & Seq
Reverse (-)
77569 .. 78201
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003895.1_g000019.1.cds

Sequence Viewer

Length: 633 bp
atggctaccagcacgcccgacacacacgacaacgatcaatctcgcgaaggagaggctcgtgaggtccagtgcattctcgagttcctcagccctaacaacgacacaccttcggtcatgacaactgatcccactaccgcacttgagatcgcgatgcgcgacctaataaagtggcgcgcacaggctgaggctgagagtcaagctgcagtggaagcccgtcggcaagtggacaacatggctaatcagaattgcatgcttcgcgatgcattgcaacgacgtatggcaaataatgaagcattcgaccgagcccaccagcaagaaacgccagcacccaccattagctgtgtcaccacaccaggggccttcctcaccacagacccaagcactggtctcgtcggcaccttcatccctaccccaactaaagcttctagaaaccccgcaggccctgcactaagaaacacgagcacaatccctcatgtcatctaccttaacacacccttgttccccaaccatctcggtacagcaccgccgccccagccagcacatggtacggctgaacctcggaagaaaatacagttgtgtcccacaccattgcacccctgcctgaccacaacacaagactgctacttcaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.98

Weight (kDa)

5.84

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 2 cut(s) 383, 542
AccII CGCG 5 cut(s) 45, 149, 156, 174, 258
AciI CCGC 4 cut(s) 135, 435, 524, 527
AclWI GGATC 1 cut(s) 119
AfaI GTAC 2 cut(s) 517, 547
AfiI CCNNNNNNNGG 3 cut(s) 354, 383, 542
AgsI TTSAA 1 cut(s) 628
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 3 cut(s) 200, 339, 422
AluI AGCT 3 cut(s) 200, 339, 422
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 357, 439
ApeKI GCWGC 1 cut(s) 200
AspLEI GCGC 3 cut(s) 156, 174, 176
AspS9I GGNCC 3 cut(s) 64, 357, 440
AsuHPI GGTGA 2 cut(s) 337, 358
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 307
BauI CACGAG 2 cut(s) 57, 457
Bbv12I GWGCWC 1 cut(s) 464
BbvCI CCTCAGC 2 cut(s) 86, 183
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 516
BceAI ACGGC 1 cut(s) 564
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 201, 527
BlsI GCNGC 2 cut(s) 202, 528
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 64, 357, 440
BmiI GGNNCC 2 cut(s) 358, 397
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 141, 250
Bpu10I CCTNAGC 2 cut(s) 86, 183
BpuEI CTTGAG 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 353, 557
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 383, 542
Bse1I ACTGG 2 cut(s) 67, 388
Bse3DI GCAATG 2 cut(s) 263, 587
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 353, 557
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 3 cut(s) 354, 383, 542
BseMI GCAATG 2 cut(s) 263, 587
BseMII CTCAG 3 cut(s) 100, 174, 180
BseNI ACTGG 2 cut(s) 67, 388
BsePI GCGCGC 1 cut(s) 172
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 5 cut(s) 45, 149, 156, 174, 258
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 2 cut(s) 359, 441
BshNI GGYRCC 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 464
BsiHKCI CYCGRG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 3 cut(s) 354, 383, 542
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 2 cut(s) 72, 293
BsnI GGCC 2 cut(s) 359, 441
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 307, 464
Bsp143I GATC 3 cut(s) 34, 124, 144
Bsp68I TCGCGA 3 cut(s) 45, 149, 258
BspACI CCGC 4 cut(s) 135, 435, 524, 527
BspANI GGCC 2 cut(s) 359, 441
BspCNI CTCAG 3 cut(s) 99, 175, 181
BspFNI CGCG 5 cut(s) 45, 149, 156, 174, 258
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 358, 397
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 392
BsrDI GCAATG 2 cut(s) 263, 587
BsrI ACTGG 2 cut(s) 67, 388
BssECI CCNNGG 2 cut(s) 353, 557
BssHII GCGCGC 1 cut(s) 172
BssMI GATC 3 cut(s) 34, 124, 144
BssSI CACGAG 2 cut(s) 57, 457
Bst2BI CACGAG 2 cut(s) 57, 457
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 6 cut(s) 14, 174, 251, 324, 439, 537
BstDEI CTNAG 4 cut(s) 86, 183, 189, 449
BstF5I GGATG 1 cut(s) 402
BstFNI CGCG 5 cut(s) 45, 149, 156, 174, 258
BstHHI GCGC 3 cut(s) 156, 174, 176
BstKTI GATC 3 cut(s) 37, 127, 147
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 34, 124, 144
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 5 cut(s) 209, 255, 319, 443, 532
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 5 cut(s) 45, 149, 156, 174, 258
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 359, 441
BtgZI GCGATG 2 cut(s) 164, 273
BtsCI GGATG 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 74, 210, 381
BtuMI TCGCGA 3 cut(s) 45, 149, 258
Cac8I GCNNGC 6 cut(s) 14, 174, 251, 324, 439, 537
CaiI CAGNNNCTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 114
CfoI GCGC 3 cut(s) 156, 174, 176
Cfr13I GGNCC 3 cut(s) 64, 357, 440
Csp6I GTAC 2 cut(s) 516, 546
CviAII CATG 5 cut(s) 115, 232, 250, 473, 542
CviQI GTAC 2 cut(s) 516, 546
DdeI CTNAG 4 cut(s) 86, 183, 189, 449
DpnI GATC 3 cut(s) 36, 126, 146
DpnII GATC 3 cut(s) 34, 124, 144
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 357, 440
EcoRII CCWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 307
FaeI CATG 5 cut(s) 118, 235, 253, 476, 545
FaiI YATR 6 cut(s) 116, 233, 251, 278, 474, 543
FaqI GGGAC 1 cut(s) 564
FatI CATG 5 cut(s) 114, 231, 249, 472, 541
FauI CCCGC 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 201, 527
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 201, 527
FspBI CTAG 1 cut(s) 426
GlaI GCGC 3 cut(s) 155, 173, 175
GluI GCNGC 2 cut(s) 201, 527
GsaI CCCAGC 1 cut(s) 535
HaeIII GGCC 2 cut(s) 359, 441
HhaI GCGC 3 cut(s) 156, 174, 176
Hin1II CATG 5 cut(s) 118, 235, 253, 476, 545
Hin6I GCGC 3 cut(s) 154, 172, 174
HinP1I GCGC 3 cut(s) 154, 172, 174
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 1 cut(s) 193
HphI GGTGA 2 cut(s) 337, 358
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 243, 561
Hpy188III TCNNGA 7 cut(s) 44, 59, 77, 115, 148, 257, 426
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 3 cut(s) 219, 276, 395
HpyAV CCTTC 4 cut(s) 41, 117, 370, 409
HpyCH4III ACNGT 1 cut(s) 573
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 7 cut(s) 72, 203, 249, 263, 268, 446, 592
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 255, 319, 443, 532
HpyF3I CTNAG 4 cut(s) 86, 183, 189, 449
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 5 cut(s) 118, 235, 253, 476, 545
HspAI GCGC 3 cut(s) 154, 172, 174
Kzo9I GATC 3 cut(s) 34, 124, 144
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 2 cut(s) 141, 250
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 343
MalI GATC 3 cut(s) 36, 126, 146
MboI GATC 3 cut(s) 34, 124, 144
MboII GAAGA 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 307, 464
MluCI AATT 1 cut(s) 244
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 7 cut(s) 46, 55, 95, 178, 374, 480, 567
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 1 cut(s) 486
MspR9I CCNGG 1 cut(s) 354
Mva1269I GAATGC 2 cut(s) 72, 293
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 5 cut(s) 45, 149, 156, 174, 258
MwoI GCNNNNNNNGC 5 cut(s) 209, 255, 319, 443, 532
NdeII GATC 3 cut(s) 34, 124, 144
NlaIII CATG 5 cut(s) 118, 235, 253, 476, 545
NlaIV GGNNCC 2 cut(s) 358, 397
NmuCI GTSAC 1 cut(s) 343
NruI TCGCGA 3 cut(s) 45, 149, 258
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 1 cut(s) 253
PaeI GCATGC 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 114
PauI GCGCGC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 2 cut(s) 72, 293
PflMI CCANNNNNTGG 2 cut(s) 383, 542
PkrI GCNGC 2 cut(s) 202, 528
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 358, 397
PspPI GGNCC 3 cut(s) 64, 357, 440
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 443
PteI GCGCGC 1 cut(s) 172
RruI TCGCGA 3 cut(s) 45, 149, 258
RsaI GTAC 2 cut(s) 517, 547
RsaNI GTAC 2 cut(s) 516, 546
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 2 cut(s) 201, 527
Sau3AI GATC 3 cut(s) 34, 124, 144
Sau96I GGNCC 3 cut(s) 64, 357, 440
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 307, 464
SfaNI GCATC 2 cut(s) 141, 250
SfcI CTRYAG 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 77, 140
SmoI CTYRAG 2 cut(s) 77, 140
SphI GCATGC 1 cut(s) 253
Sse9I AATT 1 cut(s) 244
SsiI CCGC 4 cut(s) 135, 435, 524, 527
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 573
TaiI ACGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 78, 297
TaqII GACCGA 2 cut(s) 100, 315
TasI AATT 1 cut(s) 244
TauI GCSGC 1 cut(s) 529
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 3 cut(s) 74, 210, 388
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 303, 391
TspRI CASTG 3 cut(s) 74, 210, 388
Van91I CCANNNNNTGG 2 cut(s) 383, 542
VpaK11BI GGWCC 1 cut(s) 64
XbaI TCTAGA 1 cut(s) 425
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.