Rmu_sc0000745.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000745.1
OG0000863
Physical Location & Seq
Reverse (-)
1 .. 1310
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000745.1_g000002.1.cds

Sequence Viewer

Length: 539 bp
atgaccaccgatccaaccacagcgctacagatagcaatgcgcgaccacatggagacacgcgcacaagtagaggccgaactcgcagtagccatggctgcccgccaggaggtcgaaaacatgaccaaccagaatcataccctacgaaaagcactccagtggcgagtcgtgcatcatgatagggcccatcaacaagagcccacgatgccaaccattggcggtgtccccacatccggaccggccctcactgagtacccaaccactggtttccttatccttcatggagatgagatcaaaaagcaagcatatggttgcgcatgttgtgaaattgctttgagtgaaacagcctcctgctcgccaataacaccttccacctcgagatcaccagtttgtccctatacacactccggtatagcctgctcttggatcacaatcccagaactccgaccaccactcactgcactggcttgcgatctcgccgctttcttggcctgcatgtcatataccattttctcctggtcaatccacccagcagcgatacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.65

Weight (kDa)

6.03

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 313
AccB7I CCANNNNNTGG 2 cut(s) 212, 260
AccII CGCG 2 cut(s) 42, 60
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 3 cut(s) 100, 216, 477
AclWI GGATC 2 cut(s) 5, 431
AfaI GTAC 1 cut(s) 251
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 5 cut(s) 106, 212, 230, 260, 420
AjnI CCWGG 2 cut(s) 102, 512
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AleI CACNNNNGTG 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 2 cut(s) 5, 431
Ama87I CYCGRG 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 4 cut(s) 72, 180, 237, 486
ApaI GGGCCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 95, 530
AspLEI GCGC 4 cut(s) 25, 42, 62, 314
AspS9I GGNCC 4 cut(s) 180, 181, 233, 238
AsuHPI GGTGA 1 cut(s) 372
AvaI CYCGRG 1 cut(s) 373
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 184, 198
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 2 cut(s) 104, 514
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 3 cut(s) 96, 477, 531
BlsI GCNGC 3 cut(s) 97, 478, 532
Bme1390I CCNGG 2 cut(s) 104, 514
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 373
BmgT120I GGNCC 4 cut(s) 180, 181, 233, 238
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 104, 514
BmsI GCATC 2 cut(s) 178, 192
BpmI CTGGAG 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 2 cut(s) 230, 404
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 212, 230, 260, 420
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 4 cut(s) 154, 265, 383, 465
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 428
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 104, 514
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 227
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 5 cut(s) 106, 212, 230, 260, 420
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 4 cut(s) 154, 265, 383, 465
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 526
BsgI GTGCAG 1 cut(s) 441
Bsh1236I CGCG 2 cut(s) 42, 60
BshFI GGCC 4 cut(s) 74, 182, 239, 488
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 3 cut(s) 231, 236, 405
BslFI GGGAC 2 cut(s) 206, 375
BslI CCNNNNNNNGG 5 cut(s) 106, 212, 230, 260, 420
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 2 cut(s) 206, 375
BsnI GGCC 4 cut(s) 74, 182, 239, 488
BsoBI CYCGRG 1 cut(s) 373
Bsp120I GGGCCC 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 184, 198
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 5 cut(s) 10, 288, 377, 423, 469
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 3 cut(s) 100, 216, 477
BspANI GGCC 4 cut(s) 74, 182, 239, 488
BspCNI CTCAG 1 cut(s) 238
BspEI TCCGGA 1 cut(s) 230
BspFNI CGCG 2 cut(s) 42, 60
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 2 cut(s) 5, 431
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 4 cut(s) 154, 265, 383, 465
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 5 cut(s) 10, 288, 377, 423, 469
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 104, 514
BstC8I GCNNGC 6 cut(s) 100, 300, 353, 415, 466, 490
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 2 cut(s) 42, 60
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 4 cut(s) 25, 42, 62, 314
BstKTI GATC 5 cut(s) 13, 291, 380, 426, 472
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 5 cut(s) 10, 288, 377, 423, 469
BstMWI GCNNNNNNNGC 5 cut(s) 80, 95, 166, 202, 485
BstNI CCWGG 2 cut(s) 104, 514
BstNSI RCATGY 2 cut(s) 318, 496
BstSCI CCNGG 2 cut(s) 102, 512
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 2 cut(s) 42, 60
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 4 cut(s) 74, 182, 239, 488
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 161, 243, 258, 453, 458
Cac8I GCNNGC 6 cut(s) 100, 300, 353, 415, 466, 490
CciI TCATGA 1 cut(s) 172
CfoI GCGC 4 cut(s) 25, 42, 62, 314
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 4 cut(s) 180, 181, 233, 238
CpoI CGGWCCG 1 cut(s) 233
Csp6I GTAC 1 cut(s) 250
CspI CGGWCCG 1 cut(s) 233
CviAII CATG 7 cut(s) 49, 91, 118, 173, 278, 315, 493
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 246
DpnI GATC 5 cut(s) 12, 290, 379, 425, 471
DpnII GATC 5 cut(s) 10, 288, 377, 423, 469
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 184, 198
Eco47I GGWCC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 373
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 102, 512
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 2 cut(s) 184, 198
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 7 cut(s) 52, 94, 121, 176, 281, 318, 496
FaqI GGGAC 2 cut(s) 206, 375
FatI CATG 7 cut(s) 48, 90, 117, 172, 277, 314, 492
FauI CCCGC 1 cut(s) 107
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 96, 477, 531
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 2 cut(s) 184, 198
Fsp4HI GCNGC 3 cut(s) 96, 477, 531
FspI TGCGCA 1 cut(s) 313
GlaI GCGC 4 cut(s) 24, 41, 61, 313
GluI GCNGC 3 cut(s) 96, 477, 531
GsaI CCCAGC 1 cut(s) 530
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 4 cut(s) 74, 182, 239, 488
HapII CCGG 3 cut(s) 231, 236, 405
HhaI GCGC 4 cut(s) 25, 42, 62, 314
Hin1II CATG 7 cut(s) 52, 94, 121, 176, 281, 318, 496
Hin6I GCGC 4 cut(s) 23, 40, 60, 312
HinP1I GCGC 4 cut(s) 23, 40, 60, 312
HinfI GANTC 2 cut(s) 130, 162
HpaII CCGG 3 cut(s) 231, 236, 405
HphI GGTGA 1 cut(s) 372
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 3 cut(s) 173, 231, 375
HpyAV CCTTC 2 cut(s) 284, 375
HpyCH4V TGCA 3 cut(s) 169, 458, 492
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 95, 166, 202, 485
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 7 cut(s) 52, 94, 121, 176, 281, 318, 496
HspAI GCGC 4 cut(s) 23, 40, 60, 312
Kpn2I TCCGGA 1 cut(s) 230
Kzo9I GATC 5 cut(s) 10, 288, 377, 423, 469
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 178, 192
MalI GATC 5 cut(s) 12, 290, 379, 425, 471
MboI GATC 5 cut(s) 10, 288, 377, 423, 469
MhlI GDGCHC 2 cut(s) 184, 198
MluCI AATT 1 cut(s) 324
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 38, 466
MnlI CCTC 5 cut(s) 64, 100, 251, 355, 382
MroI TCCGGA 1 cut(s) 230
MslI CAYNNNNRTG 2 cut(s) 154, 282
MspI CCGG 3 cut(s) 231, 236, 405
MspR9I CCNGG 2 cut(s) 104, 514
MvaI CCWGG 2 cut(s) 104, 514
MvnI CGCG 2 cut(s) 42, 60
MwoI GCNNNNNNNGC 5 cut(s) 80, 95, 166, 202, 485
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 304
NdeII GATC 5 cut(s) 10, 288, 377, 423, 469
NlaIII CATG 7 cut(s) 52, 94, 121, 176, 281, 318, 496
NlaIV GGNNCC 1 cut(s) 182
NsbI TGCGCA 1 cut(s) 313
NspI RCATGY 2 cut(s) 318, 496
OliI CACNNNNGTG 1 cut(s) 154
PaeR7I CTCGAG 1 cut(s) 373
PagI TCATGA 1 cut(s) 172
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 212, 260
PkrI GCNGC 3 cut(s) 97, 478, 532
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 102, 512
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 2 cut(s) 102, 512
PspN4I GGNNCC 1 cut(s) 182
PspOMI GGGCCC 1 cut(s) 180
PspPI GGNCC 4 cut(s) 180, 181, 233, 238
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 154, 282
Rsr2I CGGWCCG 1 cut(s) 233
RsrII CGGWCCG 1 cut(s) 233
SatI GCNGC 3 cut(s) 96, 477, 531
Sau3AI GATC 5 cut(s) 10, 288, 377, 423, 469
Sau96I GGNCC 4 cut(s) 180, 181, 233, 238
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 104, 514
SduI GDGCHC 2 cut(s) 184, 198
SetI ASST 3 cut(s) 111, 367, 374
SfaNI GCATC 2 cut(s) 178, 192
SfcI CTRYAG 1 cut(s) 26
Sfr274I CTCGAG 1 cut(s) 373
SinI GGWCC 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 373
SmiMI CAYNNNNRTG 2 cut(s) 154, 282
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 1 cut(s) 324
SsiI CCGC 3 cut(s) 100, 216, 477
StyD4I CCNGG 2 cut(s) 102, 512
StyI CCWWGG 1 cut(s) 90
TaqI TCGA 2 cut(s) 111, 374
TasI AATT 1 cut(s) 324
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 5 cut(s) 161, 250, 265, 460, 465
TseI GCWGC 2 cut(s) 95, 530
TspDTI ATGAA 1 cut(s) 266
TspRI CASTG 5 cut(s) 161, 250, 265, 460, 465
Van91I CCANNNNNTGG 2 cut(s) 212, 260
VpaK11BI GGWCC 1 cut(s) 233
XceI RCATGY 2 cut(s) 318, 496
XhoI CTCGAG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.