Rmu_sc0003226.1_g000065

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0000863
Physical Location & Seq
Reverse (-)
252562 .. 252870
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000065.1.cds

Sequence Viewer

Length: 309 bp
atgaccactgatcctaccatagcgctacatatagcaatgcgcgacctcatggaaacacgtgcacaggttgaggccgagcgcgcagctgccatggcagcccgccgggaggtcgaaaacatgaccaacaagaatcgcaccgtacgagaagcactccagcggcgagttgcgcgcgacgacaccttggacaagtcccaccagctggagaccccgataccgactattggcggtgttcctacaccaggaccggtcctcacaacggaccccgccaccggcctcgctggcaccttcatgcccccgaacccaacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.1

Weight (kDa)

6.08

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 199
AccII CGCG 4 cut(s) 42, 81, 169, 171
AciI CCGC 4 cut(s) 100, 157, 225, 264
AclWI GGATC 1 cut(s) 5
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 141
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 6 cut(s) 106, 199, 221, 239, 256, 269
AflIII ACRYGT 1 cut(s) 56
AgeI ACCGGT 1 cut(s) 244
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 2 cut(s) 86, 199
AluI AGCT 2 cut(s) 86, 199
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 60
AlwI GGATC 1 cut(s) 5
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 2 cut(s) 72, 271
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 83, 86, 95
AsiGI ACCGGT 1 cut(s) 244
AspLEI GCGC 6 cut(s) 25, 42, 81, 83, 169, 171
AspS9I GGNCC 3 cut(s) 242, 247, 259
AsuC2I CCSGG 1 cut(s) 104
AvaII GGWCC 3 cut(s) 242, 247, 259
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 281
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 3 cut(s) 73, 95, 107
BciT130I CCWGG 1 cut(s) 240
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 4 cut(s) 84, 87, 96, 158
BlsI GCNGC 4 cut(s) 85, 88, 97, 159
Bme1390I CCNGG 2 cut(s) 104, 240
Bme18I GGWCC 3 cut(s) 242, 247, 259
BmgT120I GGNCC 3 cut(s) 242, 247, 259
BmiI GGNNCC 2 cut(s) 261, 283
BmrFI CCNGG 2 cut(s) 104, 240
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BpmI CTGGAG 2 cut(s) 137, 221
BpuMI CCSGG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 90, 180
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 6 cut(s) 106, 199, 221, 239, 256, 269
Bse118I RCCGGY 2 cut(s) 244, 269
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 90, 180
BseLI CCNNNNNNNGG 6 cut(s) 106, 199, 221, 239, 256, 269
BseMI GCAATG 1 cut(s) 42
BsePI GCGCGC 2 cut(s) 79, 167
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 3 cut(s) 73, 95, 107
Bsh1236I CGCG 4 cut(s) 42, 81, 169, 171
BshFI GGCC 2 cut(s) 74, 273
BshNI GGYRCC 1 cut(s) 281
BshTI ACCGGT 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 3 cut(s) 103, 245, 270
BsiWI CGTACG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 6 cut(s) 106, 199, 221, 239, 256, 269
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 2 cut(s) 74, 273
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 4 cut(s) 100, 157, 225, 264
BspANI GGCC 2 cut(s) 74, 273
BspFNI CGCG 4 cut(s) 42, 81, 169, 171
BspLI GGNNCC 2 cut(s) 261, 283
BspPI GGATC 1 cut(s) 5
BspT107I GGYRCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 2 cut(s) 244, 269
BssAI RCCGGY 2 cut(s) 244, 269
BssECI CCNNGG 2 cut(s) 90, 180
BssHII GCGCGC 2 cut(s) 79, 167
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 90, 180
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 81, 100, 169, 280
BstDSI CCRYGG 1 cut(s) 90
BstENI CCTNNNNNAGG 1 cut(s) 237
BstFNI CGCG 4 cut(s) 42, 81, 169, 171
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 6 cut(s) 25, 42, 81, 83, 169, 171
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 5 cut(s) 80, 92, 95, 166, 279
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 102, 238
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 4 cut(s) 42, 81, 169, 171
BstV1I GCAGC 3 cut(s) 73, 95, 107
BsuRI GGCC 2 cut(s) 74, 273
BtgI CCRYGG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 4 cut(s) 81, 100, 169, 280
CfoI GCGC 6 cut(s) 25, 42, 81, 83, 169, 171
Cfr10I RCCGGY 2 cut(s) 244, 269
Cfr13I GGNCC 3 cut(s) 242, 247, 259
Csp6I GTAC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 4 cut(s) 49, 91, 118, 289
CviJI RGCY 5 cut(s) 74, 86, 98, 199, 273
CviKI_1 RGCY 5 cut(s) 74, 86, 98, 199, 273
CviQI GTAC 1 cut(s) 140
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 90, 180
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 3 cut(s) 242, 247, 259
Eco47III AGCGCT 1 cut(s) 24
Eco72I CACGTG 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 90, 180
ErhI CCWWGG 2 cut(s) 90, 180
FaeI CATG 4 cut(s) 52, 94, 121, 292
FaiI YATR 8 cut(s) 20, 30, 32, 50, 92, 119, 290, 307
FaqI GGGAC 1 cut(s) 175
FatI CATG 4 cut(s) 48, 90, 117, 288
FauI CCCGC 2 cut(s) 107, 271
Fnu4HI GCNGC 4 cut(s) 84, 87, 96, 158
Fsp4HI GCNGC 4 cut(s) 84, 87, 96, 158
GlaI GCGC 6 cut(s) 24, 41, 80, 82, 168, 170
GluI GCNGC 4 cut(s) 84, 87, 96, 158
GsuI CTGGAG 2 cut(s) 137, 221
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 74, 273
HapII CCGG 3 cut(s) 103, 245, 270
HhaI GCGC 6 cut(s) 25, 42, 81, 83, 169, 171
Hin1II CATG 4 cut(s) 52, 94, 121, 292
Hin6I GCGC 6 cut(s) 23, 40, 79, 81, 167, 169
HinP1I GCGC 6 cut(s) 23, 40, 79, 81, 167, 169
HinfI GANTC 1 cut(s) 130
HpaII CCGG 3 cut(s) 103, 245, 270
Hpy166II GTNNAC 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 92, 95, 166, 279
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 4 cut(s) 52, 94, 121, 292
HspAI GCGC 6 cut(s) 23, 40, 79, 81, 167, 169
Kzo9I GATC 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 73, 95, 107
MaeII ACGT 1 cut(s) 58
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 64
MnlI CCTC 5 cut(s) 56, 64, 100, 260, 284
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 3 cut(s) 86, 157, 199
MspI CCGG 3 cut(s) 103, 245, 270
MspR9I CCNGG 2 cut(s) 104, 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 4 cut(s) 42, 81, 169, 171
MwoI GCNNNNNNNGC 5 cut(s) 80, 92, 95, 166, 279
NciI CCSGG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 90
NdeII GATC 1 cut(s) 10
NlaIII CATG 4 cut(s) 52, 94, 121, 292
NlaIV GGNNCC 2 cut(s) 261, 283
NmeAIII GCCGAG 1 cut(s) 100
PauI GCGCGC 2 cut(s) 79, 167
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PfeI GAWTC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 4 cut(s) 85, 88, 97, 159
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 238
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 238
PspLI CGTACG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 261, 283
PspPI GGNCC 3 cut(s) 242, 247, 259
PteI GCGCGC 2 cut(s) 79, 167
PvuII CAGCTG 2 cut(s) 86, 199
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 287
SatI GCNGC 4 cut(s) 84, 87, 96, 158
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 3 cut(s) 242, 247, 259
ScrFI CCNGG 2 cut(s) 104, 240
SduI GDGCHC 1 cut(s) 64
SetI ASST 8 cut(s) 48, 61, 69, 88, 111, 182, 201, 287
SinI GGWCC 3 cut(s) 242, 247, 259
SmiMI CAYNNNNRTG 1 cut(s) 287
SsiI CCGC 4 cut(s) 100, 157, 225, 264
StyD4I CCNGG 2 cut(s) 102, 238
StyI CCWWGG 2 cut(s) 90, 180
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 111
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 1 cut(s) 13
TseI GCWGC 3 cut(s) 83, 86, 95
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 3 cut(s) 242, 247, 259
XagI CCTNNNNNAGG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.