Rmu_sc0022400.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022400.1
OG0000863
Physical Location & Seq
Reverse (-)
7076 .. 7552
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022400.1_g000007.1.cds

Sequence Viewer

Length: 477 bp
atgcacgatctcattgagacacgcgcacaggccgaggcagagtgtacagcagccatggcggctcgccgggaggtcgaaaatatgacaaaccagaatcgcatccttcgagaggcactccagcggcgagtcacgcagaacgaagcactggacagagcccaccagcgagagaccccgataccaactatcggtggtgtcccgacaccaggagtagtccttaccactgacccaggtactggccttgctggcaccttcctgcctccaggcgccacatcgggaagccctacaagccccacgcctggcagcacgagtgcagggccccaggtcatctacttgaattcgcccatactccccaatcaactcggcacggagccagcacctcaacctgtccaagatataggggaacctcgggtgcaaacgccgccacagcagccaacatacccccacccgaccacaatactaagctattgctccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.81

Weight (kDa)

5.56

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 245, 263
AccB7I CCANNNNNTGG 1 cut(s) 233
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 59, 121, 419
AcsI RAATTY 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 46, 232
AfiI CCNNNNNNNGG 5 cut(s) 109, 185, 203, 233, 296
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 5 cut(s) 202, 226, 259, 295, 318
AluBI AGCT 1 cut(s) 462
AluI AGCT 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 11, 161
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 3 cut(s) 30, 235, 314
ApaI GGGCCC 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 50, 300, 427
ApoI RAATTY 1 cut(s) 334
AspLEI GCGC 2 cut(s) 26, 266
AspS9I GGNCC 2 cut(s) 314, 315
AsuC2I CCSGG 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 318
BanI GGYRCC 2 cut(s) 245, 263
BanII GRGCYC 2 cut(s) 157, 318
BauI CACGAG 1 cut(s) 304
BbvI GCAGC 3 cut(s) 62, 312, 439
BciT130I CCWGG 5 cut(s) 204, 228, 261, 297, 320
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 11, 161
BfoI RGCGCY 1 cut(s) 267
BglI GCCNNNNNGGC 2 cut(s) 59, 243
BisI GCNGC 6 cut(s) 51, 60, 122, 301, 419, 428
BlsI GCNGC 6 cut(s) 52, 61, 123, 302, 420, 429
Bme1390I CCNGG 6 cut(s) 68, 204, 228, 261, 297, 320
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 314, 315
BmiI GGNNCC 6 cut(s) 247, 265, 316, 317, 369, 402
BmrFI CCNGG 6 cut(s) 68, 204, 228, 261, 297, 320
BmsI GCATC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 99, 131
BpmI CTGGAG 2 cut(s) 101, 243
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 5 cut(s) 33, 54, 226, 318, 404
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 185, 203, 233, 296
Bse1I ACTGG 2 cut(s) 150, 238
BseBI CCWGG 5 cut(s) 204, 228, 261, 297, 320
BseDI CCNNGG 5 cut(s) 33, 54, 226, 318, 404
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 5 cut(s) 109, 185, 203, 233, 296
BseNI ACTGG 2 cut(s) 150, 238
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 3 cut(s) 62, 312, 439
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 3 cut(s) 32, 237, 316
BshNI GGYRCC 2 cut(s) 245, 263
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 5 cut(s) 109, 185, 203, 233, 296
BsmAI GTCTC 2 cut(s) 11, 161
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 3 cut(s) 32, 237, 316
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 405
Bsp120I GGGCCC 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 157, 318
Bsp1407I TGTACA 1 cut(s) 44
Bsp143I GATC 1 cut(s) 7
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 3 cut(s) 59, 121, 419
BspANI GGCC 3 cut(s) 32, 237, 316
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 6 cut(s) 247, 265, 316, 317, 369, 402
BspT107I GGYRCC 2 cut(s) 245, 263
BspTNI GGTCTC 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 44
BsrI ACTGG 2 cut(s) 150, 238
BssECI CCNNGG 5 cut(s) 33, 54, 226, 318, 404
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 304
Bst2UI CCWGG 5 cut(s) 204, 228, 261, 297, 320
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 64, 244, 372
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 2 cut(s) 26, 266
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 11, 161
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 8 cut(s) 56, 59, 130, 243, 285, 418, 424, 427
BstNI CCWGG 5 cut(s) 204, 228, 261, 297, 320
BstSCI CCNGG 6 cut(s) 66, 202, 226, 259, 295, 318
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 62, 312, 439
BsuRI GGCC 3 cut(s) 32, 237, 316
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 143, 219
Cac8I GCNNGC 3 cut(s) 64, 244, 372
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 2 cut(s) 26, 266
Cfr13I GGNCC 2 cut(s) 314, 315
Csp6I GTAC 2 cut(s) 45, 231
CviAII CATG 1 cut(s) 55
CviQI GTAC 2 cut(s) 45, 231
DdeI CTNAG 1 cut(s) 458
DinI GGCGCC 1 cut(s) 265
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 157, 318
Eco31I GGTCTC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 2 cut(s) 314, 315
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 5 cut(s) 202, 226, 259, 295, 318
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 157, 318
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 58
FaiI YATR 5 cut(s) 56, 83, 344, 395, 436
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 6 cut(s) 51, 60, 122, 301, 419, 428
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 2 cut(s) 157, 318
Fsp4HI GCNGC 6 cut(s) 51, 60, 122, 301, 419, 428
GlaI GCGC 2 cut(s) 25, 265
GluI GCNGC 6 cut(s) 51, 60, 122, 301, 419, 428
GsuI CTGGAG 2 cut(s) 101, 243
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 3 cut(s) 32, 237, 316
HapII CCGG 1 cut(s) 67
HhaI GCGC 2 cut(s) 26, 266
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 2 cut(s) 24, 264
HinP1I GCGC 2 cut(s) 24, 264
HinfI GANTC 2 cut(s) 94, 126
HpaII CCGG 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 107, 196, 273
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 113, 259
HpyCH4V TGCA 3 cut(s) 4, 311, 412
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 59, 130, 243, 285, 418, 424, 427
HpyF3I CTNAG 1 cut(s) 458
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 2 cut(s) 24, 264
KasI GGCGCC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 2 cut(s) 367, 473
Lsp1109I GCAGC 3 cut(s) 62, 312, 439
LweI GCATC 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 157, 318
MluCI AATT 1 cut(s) 334
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 6 cut(s) 28, 64, 103, 267, 387, 414
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 6 cut(s) 68, 204, 228, 261, 297, 320
MvaI CCWGG 5 cut(s) 204, 228, 261, 297, 320
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 8 cut(s) 56, 59, 130, 243, 285, 418, 424, 427
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 54
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 6 cut(s) 247, 265, 316, 317, 369, 402
NmeAIII GCCGAG 2 cut(s) 58, 339
NmuCI GTSAC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 6 cut(s) 52, 61, 123, 302, 420, 429
PleI GAGTC 1 cut(s) 134
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 5 cut(s) 202, 226, 259, 295, 318
PspGI CCWGG 5 cut(s) 202, 226, 259, 295, 318
PspN4I GGNNCC 6 cut(s) 247, 265, 316, 317, 369, 402
PspOMI GGGCCC 1 cut(s) 314
PspPI GGNCC 2 cut(s) 314, 315
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 2 cut(s) 46, 232
RsaNI GTAC 2 cut(s) 45, 231
SatI GCNGC 6 cut(s) 51, 60, 122, 301, 419, 428
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 314, 315
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 6 cut(s) 68, 204, 228, 261, 297, 320
SduI GDGCHC 2 cut(s) 157, 318
SetI ASST 8 cut(s) 75, 232, 251, 324, 379, 385, 406, 464
SfaNI GCATC 1 cut(s) 108
SfoI GGCGCC 1 cut(s) 265
Sse9I AATT 1 cut(s) 334
SsiI CCGC 3 cut(s) 59, 121, 419
SspDI GGCGCC 1 cut(s) 263
StyD4I CCNGG 6 cut(s) 66, 202, 226, 259, 295, 318
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 75, 106
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 44
TauI GCSGC 3 cut(s) 62, 124, 421
TfiI GAWTC 1 cut(s) 94
TscAI CASTG 2 cut(s) 150, 226
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 50, 300, 427
Tsp45I GTSAC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 150, 226
Van91I CCANNNNNTGG 1 cut(s) 233
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.