Rmu_sc0012746.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012746.1
OG0000863
Physical Location & Seq
Reverse (-)
53347 .. 53748
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012746.1_g000018.1.cds

Sequence Viewer

Length: 402 bp
atggctaccagcaatcccgataactgcaacgatgatctgcctcgcgaaacaacgccccgcgaggtccagcgtagtcttgagtttcagagcccaaacaccgagacgggatcattcgtgaccaccgatccaaccacagcactacagatagcaatgcgcgaccacatggagacacgcgcacaagtagaggccgaactcgcagtagccatggctgcccgccgggacgtcgaaaacatgaccaaccagaatcataccctacgaaaagcactccagcggcgagtcgtgcatcatgatagggcccatcaacaagagaccacgatgccaaccattggcggtgtccccacactgggaccggccctcactgagtacccaaccactggtttccttatcgttcagttctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

5.45

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB7I CCANNNNNTGG 2 cut(s) 326, 374
AccII CGCG 4 cut(s) 45, 60, 156, 174
AciI CCGC 4 cut(s) 58, 214, 271, 330
AclWI GGATC 2 cut(s) 115, 119
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 4 cut(s) 326, 343, 344, 374
Alw26I GTCTC 3 cut(s) 95, 161, 302
AlwI GGATC 2 cut(s) 115, 119
AoxI GGCC 3 cut(s) 186, 294, 351
ApaI GGGCCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 2 cut(s) 156, 176
AspS9I GGNCC 5 cut(s) 64, 294, 295, 347, 352
AsuC2I CCSGG 1 cut(s) 218
AvaII GGWCC 2 cut(s) 64, 347
BaeGI GKGCMC 1 cut(s) 298
BanII GRGCYC 2 cut(s) 92, 298
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 306
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 3 cut(s) 95, 161, 302
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 210, 272
BlsI GCNGC 2 cut(s) 211, 273
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 2 cut(s) 64, 347
BmgT120I GGNCC 5 cut(s) 64, 294, 295, 347, 352
BmiI GGNNCC 2 cut(s) 296, 348
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 292, 306
BmuI ACTGGG 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 343, 344, 374
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 348, 379
Bse3DI GCAATG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 204
BseLI CCNNNNNNNGG 4 cut(s) 326, 343, 344, 374
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 348, 379
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 4 cut(s) 45, 60, 156, 174
BshFI GGCC 3 cut(s) 188, 296, 353
BsiSI CCGG 2 cut(s) 217, 350
BslFI GGGAC 3 cut(s) 233, 320, 360
BslI CCNNNNNNNGG 4 cut(s) 326, 343, 344, 374
BsmAI GTCTC 3 cut(s) 95, 161, 302
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 3 cut(s) 233, 320, 360
BsnI GGCC 3 cut(s) 188, 296, 353
Bso31I GGTCTC 1 cut(s) 302
Bsp120I GGGCCC 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 92, 298
Bsp143I GATC 3 cut(s) 34, 107, 124
Bsp19I CCATGG 1 cut(s) 204
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 4 cut(s) 58, 214, 271, 330
BspANI GGCC 3 cut(s) 188, 296, 353
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 4 cut(s) 45, 60, 156, 174
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 296, 348
BspPI GGATC 2 cut(s) 115, 119
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 2 cut(s) 348, 379
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 34, 107, 124
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 204
BstFNI CGCG 4 cut(s) 45, 60, 156, 174
BstHHI GCGC 2 cut(s) 156, 176
BstKTI GATC 3 cut(s) 37, 110, 127
BstMAI GTCTC 3 cut(s) 95, 161, 302
BstMBI GATC 3 cut(s) 34, 107, 124
BstMWI GCNNNNNNNGC 3 cut(s) 194, 209, 280
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 4 cut(s) 45, 60, 156, 174
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 3 cut(s) 188, 296, 353
BtgI CCRYGG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 341, 357, 372
BtuMI TCGCGA 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 214
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 156, 176
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 5 cut(s) 64, 294, 295, 347, 352
Csp6I GTAC 1 cut(s) 364
CviAII CATG 4 cut(s) 163, 205, 232, 287
CviJI RGCY 7 cut(s) 5, 90, 188, 203, 209, 296, 353
CviKI_1 RGCY 7 cut(s) 5, 90, 188, 203, 209, 296, 353
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 36, 109, 126
DpnII GATC 3 cut(s) 34, 107, 124
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 92, 298
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 64, 347
EcoO109I RGGNCCY 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 2 cut(s) 92, 298
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 4 cut(s) 166, 208, 235, 290
FaiI YATR 5 cut(s) 164, 206, 233, 249, 288
FaqI GGGAC 3 cut(s) 233, 320, 360
FatI CATG 4 cut(s) 162, 204, 231, 286
FauI CCCGC 2 cut(s) 65, 221
Fnu4HI GCNGC 2 cut(s) 210, 272
FriOI GRGCYC 2 cut(s) 92, 298
Fsp4HI GCNGC 2 cut(s) 210, 272
GlaI GCGC 2 cut(s) 155, 175
GluI GCNGC 2 cut(s) 210, 272
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 3 cut(s) 188, 296, 353
HapII CCGG 2 cut(s) 217, 350
HhaI GCGC 2 cut(s) 156, 176
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 166, 208, 235, 290
Hin6I GCGC 2 cut(s) 154, 174
HinP1I GCGC 2 cut(s) 154, 174
HinfI GANTC 2 cut(s) 244, 276
HpaII CCGG 2 cut(s) 217, 350
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 5 cut(s) 17, 44, 77, 115, 287
Hpy99I CGWCG 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 27, 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 209, 280
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 166, 208, 235, 290
HspAI GCGC 2 cut(s) 154, 174
Kzo9I GATC 3 cut(s) 34, 107, 124
LpnPI CCDG 8 cut(s) 22, 80, 230, 254, 281, 329, 360, 363
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 292, 306
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 115
MalI GATC 3 cut(s) 36, 109, 126
MboI GATC 3 cut(s) 34, 107, 124
MhlI GDGCHC 2 cut(s) 92, 298
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 4 cut(s) 51, 55, 178, 365
MseI TTAA 1 cut(s) 400
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 2 cut(s) 217, 350
MspR9I CCNGG 1 cut(s) 218
MvnI CGCG 4 cut(s) 45, 60, 156, 174
MwoI GCNNNNNNNGC 3 cut(s) 194, 209, 280
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 204
NdeII GATC 3 cut(s) 34, 107, 124
NlaIII CATG 4 cut(s) 166, 208, 235, 290
NlaIV GGNNCC 2 cut(s) 296, 348
NmuCI GTSAC 1 cut(s) 115
NruI TCGCGA 1 cut(s) 45
PagI TCATGA 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 244
PflMI CCANNNNNTGG 2 cut(s) 326, 374
PkrI GCNGC 2 cut(s) 211, 273
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 296, 348
PspOMI GGGCCC 1 cut(s) 294
PspPI GGNCC 5 cut(s) 64, 294, 295, 347, 352
RruI TCGCGA 1 cut(s) 45
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 2 cut(s) 210, 272
Sau3AI GATC 3 cut(s) 34, 107, 124
Sau96I GGNCC 5 cut(s) 64, 294, 295, 347, 352
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 2 cut(s) 92, 298
SetI ASST 2 cut(s) 66, 225
SfaNI GCATC 2 cut(s) 292, 306
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 2 cut(s) 64, 347
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SsiI CCGC 4 cut(s) 58, 214, 271, 330
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 204
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 225
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TscAI CASTG 3 cut(s) 348, 364, 379
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 115
TspRI CASTG 3 cut(s) 348, 364, 379
Van91I CCANNNNNTGG 2 cut(s) 326, 374
VpaK11BI GGWCC 2 cut(s) 64, 347
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.