Rmu_sc0004646.1_g000038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004646.1
OG0000863
Physical Location & Seq
Reverse (-)
132033 .. 135454
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004646.1_g000038.1.cds

Sequence Viewer

Length: 921 bp
atgaaagattgtcatgaattgagaactattggaaaatttgggtacagcaagaaggaagatctggaattactattattttacagtaatcaggaaactgggaaaagagatgaaataggttgcatgttatggaatttgagaaaggatcaaatttctgtggatagttctatagttgttattctgagactcattgtcaagtatctgaaaaatttgatcatggtgattttgcagcttctgaccttgacagtaacacggcatataaagagcaagcaaaggcaaagatcattttgccttactggggaaagttatggaagtaagggagaagtcgaagctgttagaagagaggaagaagcatttggaatcggtttccaagagagcaagcttgaacatgatgtcagacaaattgaattgcagctattggagaatgacgctcctgctgttaatgatagaggcttgcagctgaaaatgagtgagcaattcatgaacaaagctgaaacatttggcgctagaaggactcccctcgctccttgctggaagaacaacaagccaccaacagctaccagcactctagataccaatagcgacgattcacctcacgaggcagcgacccgtgaggtccagcgcacgcttgagtttcagagctcgaacaccgagacatgcttggtcatgaccactaacgtgaccactacactggaaataacgatgcgtgacttaatggagacacattcacaggctgaggctgagcgcgcggcagctatggcagctcgccgagaagtggaaaatatgacaaaccagaatagcattctccgggaggcactcaagaggagagttgcgaacaattggtggtgtcccgacacccggagcaatcctcaccacagaccccaagcactggcctcactggcacttttatgccaccaagcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

34.96

Weight (kDa)

7.09

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 886
AccII CGCG 2 cut(s) 744, 746
AciI CCGC 1 cut(s) 746
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 4 cut(s) 35, 130, 147, 205
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 4 cut(s) 295, 772, 855, 886
AgsI TTSAA 2 cut(s) 383, 404
AhdI GACNNNNNGTC 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AleI CACNNNNGTG 1 cut(s) 674
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 3 cut(s) 175, 644, 710
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 1 cut(s) 888
ApeKI GCWGC 6 cut(s) 226, 409, 454, 599, 749, 758
ApoI RAATTY 4 cut(s) 35, 130, 147, 205
AspLEI GCGC 4 cut(s) 503, 621, 744, 746
AspS9I GGNCC 1 cut(s) 613
AsuC2I CCSGG 2 cut(s) 806, 856
AsuHPI GGTGA 3 cut(s) 229, 579, 860
AvaII GGWCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 641
BauI CACGAG 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 641
BbvCI CCTCAGC 1 cut(s) 732
BbvI GCAGC 6 cut(s) 238, 421, 466, 611, 761, 770
BceAI ACGGC 1 cut(s) 266
BclI TGATCA 1 cut(s) 210
BcnI CCSGG 2 cut(s) 806, 856
BcoDI GTCTC 3 cut(s) 175, 644, 710
BfaI CTAG 2 cut(s) 504, 566
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 504
BglI GCCNNNNNGGC 1 cut(s) 896
BglII AGATCT 1 cut(s) 58
BisI GCNGC 7 cut(s) 227, 410, 455, 600, 747, 750, 759
BlpI GCTNAGC 1 cut(s) 738
BlsI GCNGC 7 cut(s) 228, 411, 456, 601, 748, 751, 760
Bme1390I CCNGG 2 cut(s) 806, 856
Bme18I GGWCC 1 cut(s) 613
BmeRI GACNNNNNGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 613
BmrFI CCNGG 2 cut(s) 806, 856
BmrI ACTGGG 2 cut(s) 105, 303
BmsI GCATC 1 cut(s) 690
BmuI ACTGGG 2 cut(s) 105, 303
BplI GAGNNNNNCTC 2 cut(s) 850, 882
Bpu10I CCTNAGC 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 647, 800
BpuMI CCSGG 2 cut(s) 806, 856
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 772, 855, 886
Bse1I ACTGG 5 cut(s) 100, 298, 693, 891, 900
BseLI CCNNNNNNNGG 4 cut(s) 295, 772, 855, 886
BseMII CTCAG 3 cut(s) 170, 723, 729
BseNI ACTGG 5 cut(s) 100, 298, 693, 891, 900
BsePI GCGCGC 1 cut(s) 742
BseRI GAGGAG 1 cut(s) 835
BseXI GCAGC 6 cut(s) 238, 421, 466, 611, 761, 770
Bsh1236I CGCG 2 cut(s) 744, 746
BshFI GGCC 1 cut(s) 890
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 2 cut(s) 805, 856
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 4 cut(s) 295, 772, 855, 886
BsmAI GTCTC 3 cut(s) 175, 644, 710
BsmFI GGGAC 1 cut(s) 831
BsmI GAATGC 1 cut(s) 798
BsnI GGCC 1 cut(s) 890
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 4 cut(s) 58, 142, 210, 278
Bsp1720I GCTNAGC 1 cut(s) 738
BspACI CCGC 1 cut(s) 746
BspANI GGCC 1 cut(s) 890
BspCNI CTCAG 3 cut(s) 171, 724, 730
BspFNI CGCG 2 cut(s) 744, 746
BspHI TCATGA 3 cut(s) 13, 477, 663
BspPI GGATC 1 cut(s) 150
BsrI ACTGG 5 cut(s) 100, 298, 693, 891, 900
BssHII GCGCGC 1 cut(s) 742
BssMI GATC 4 cut(s) 58, 142, 210, 278
BssSI CACGAG 1 cut(s) 593
Bst2BI CACGAG 1 cut(s) 593
Bst4CI ACNGT 2 cut(s) 83, 244
Bst6I CTCTTC 1 cut(s) 331
BstC8I GCNNGC 6 cut(s) 266, 377, 452, 623, 744, 763
BstDEI CTNAG 3 cut(s) 179, 732, 738
BstFNI CGCG 2 cut(s) 744, 746
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 4 cut(s) 503, 621, 744, 746
BstKTI GATC 4 cut(s) 61, 145, 213, 281
BstMAI GTCTC 3 cut(s) 175, 644, 710
BstMBI GATC 4 cut(s) 58, 142, 210, 278
BstMWI GCNNNNNNNGC 4 cut(s) 743, 755, 758, 896
BstNSI RCATGY 2 cut(s) 124, 657
BstSCI CCNGG 2 cut(s) 804, 854
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 2 cut(s) 744, 746
BstV1I GCAGC 6 cut(s) 238, 421, 466, 611, 761, 770
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 890
BtsIMutI CAGTG 3 cut(s) 686, 884, 893
Cac8I GCNNGC 6 cut(s) 266, 377, 452, 623, 744, 763
CaiI CAGNNNCTG 1 cut(s) 232
CciI TCATGA 3 cut(s) 13, 477, 663
CfoI GCGC 4 cut(s) 503, 621, 744, 746
Cfr13I GGNCC 1 cut(s) 613
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 43
CviAII CATG 7 cut(s) 14, 121, 214, 386, 478, 654, 664
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 3 cut(s) 179, 732, 738
DpnI GATC 4 cut(s) 60, 144, 212, 280
DpnII GATC 4 cut(s) 58, 142, 210, 278
DriI GACNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 331
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 641
Eco47I GGWCC 1 cut(s) 613
Eco53kI GAGCTC 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 639
EcoT38I GRGCYC 1 cut(s) 641
FaeI CATG 7 cut(s) 17, 124, 217, 389, 481, 657, 667
FaqI GGGAC 1 cut(s) 831
FatI CATG 7 cut(s) 13, 120, 213, 385, 477, 653, 663
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 7 cut(s) 227, 410, 455, 600, 747, 750, 759
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 7 cut(s) 227, 410, 455, 600, 747, 750, 759
FspBI CTAG 2 cut(s) 504, 566
GlaI GCGC 4 cut(s) 502, 620, 743, 745
GluI GCNGC 7 cut(s) 227, 410, 455, 600, 747, 750, 759
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 1 cut(s) 890
HapII CCGG 2 cut(s) 805, 856
HgaI GACGC 1 cut(s) 434
HhaI GCGC 4 cut(s) 503, 621, 744, 746
Hin1II CATG 7 cut(s) 17, 124, 217, 389, 481, 657, 667
Hin6I GCGC 4 cut(s) 501, 619, 742, 744
HinP1I GCGC 4 cut(s) 501, 619, 742, 744
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 4 cut(s) 183, 357, 511, 584
HpaII CCGG 2 cut(s) 805, 856
HphI GGTGA 3 cut(s) 229, 579, 860
Hpy188I TCNGA 5 cut(s) 180, 201, 234, 395, 636
Hpy188III TCNNGA 9 cut(s) 14, 62, 89, 478, 566, 593, 664, 817, 848
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 2 cut(s) 46, 501
HpyCH4III ACNGT 2 cut(s) 83, 244
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 4 cut(s) 120, 226, 409, 454
HpyF10VI GCNNNNNNNGC 4 cut(s) 743, 755, 758, 896
HpyF3I CTNAG 3 cut(s) 179, 732, 738
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 7 cut(s) 17, 124, 217, 389, 481, 657, 667
HspAI GCGC 4 cut(s) 501, 619, 742, 744
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 4 cut(s) 58, 142, 210, 278
LmnI GCTCC 3 cut(s) 433, 526, 858
Lsp1109I GCAGC 6 cut(s) 238, 421, 466, 611, 761, 770
LweI GCATC 1 cut(s) 690
MaeI CTAG 2 cut(s) 504, 566
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 3 cut(s) 244, 676, 704
MalI GATC 4 cut(s) 60, 144, 212, 280
MboI GATC 4 cut(s) 58, 142, 210, 278
MboII GAAGA 4 cut(s) 68, 348, 356, 544
MfeI CAATTG 1 cut(s) 835
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 641
MlyI GAGTC 2 cut(s) 177, 505
MseI TTAA 2 cut(s) 438, 710
MslI CAYNNNNRTG 2 cut(s) 674, 904
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 2 cut(s) 805, 856
MspR9I CCNGG 2 cut(s) 806, 856
MunI CAATTG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 798
MvnI CGCG 2 cut(s) 744, 746
MwoI GCNNNNNNNGC 4 cut(s) 743, 755, 758, 896
NciI CCSGG 2 cut(s) 806, 856
NdeII GATC 4 cut(s) 58, 142, 210, 278
NlaIII CATG 7 cut(s) 17, 124, 217, 389, 481, 657, 667
NmeAIII GCCGAG 1 cut(s) 791
NmuCI GTSAC 2 cut(s) 676, 704
NspI RCATGY 2 cut(s) 124, 657
OliI CACNNNNGTG 1 cut(s) 674
PagI TCATGA 3 cut(s) 13, 477, 663
PauI GCGCGC 1 cut(s) 742
PctI GAATGC 1 cut(s) 798
PfeI GAWTC 2 cut(s) 357, 584
PflMI CCANNNNNTGG 1 cut(s) 886
PfoI TCCNGGA 1 cut(s) 804
PkrI GCNGC 7 cut(s) 228, 411, 456, 601, 748, 751, 760
PleI GAGTC 2 cut(s) 177, 505
PpsI GAGTC 2 cut(s) 177, 505
Psp124BI GAGCTC 1 cut(s) 641
PspPI GGNCC 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 58
PteI GCGCGC 1 cut(s) 742
PvuII CAGCTG 1 cut(s) 457
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 2 cut(s) 674, 904
SacI GAGCTC 1 cut(s) 641
SaqAI TTAA 2 cut(s) 438, 710
SatI GCNGC 7 cut(s) 227, 410, 455, 600, 747, 750, 759
Sau3AI GATC 4 cut(s) 58, 142, 210, 278
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 2 cut(s) 177, 505
ScrFI CCNGG 2 cut(s) 806, 856
SduI GDGCHC 1 cut(s) 641
SfaNI GCATC 1 cut(s) 690
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 2 cut(s) 674, 904
SmlI CTYRAG 2 cut(s) 626, 815
SmoI CTYRAG 2 cut(s) 626, 815
SsiI CCGC 1 cut(s) 746
SspMI CTAG 2 cut(s) 504, 566
SstI GAGCTC 1 cut(s) 641
StyD4I CCNGG 2 cut(s) 804, 854
TaaI ACNGT 2 cut(s) 83, 244
TaiI ACGT 1 cut(s) 678
TaqI TCGA 2 cut(s) 324, 641
TauI GCSGC 1 cut(s) 749
TfiI GAWTC 2 cut(s) 357, 584
Tru1I TTAA 2 cut(s) 438, 710
Tru9I TTAA 2 cut(s) 438, 710
TscAI CASTG 3 cut(s) 693, 891, 900
TseFI GTSAC 2 cut(s) 676, 704
TseI GCWGC 6 cut(s) 226, 409, 454, 599, 749, 758
Tsp45I GTSAC 2 cut(s) 676, 704
TspDTI ATGAA 5 cut(s) 17, 30, 123, 466, 494
TspRI CASTG 3 cut(s) 693, 891, 900
Van91I CCANNNNNTGG 1 cut(s) 886
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 4 cut(s) 35, 130, 147, 205
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 2 cut(s) 124, 657
XspI CTAG 2 cut(s) 504, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.