Rmu_sc0004228.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004228.1
OG0000863
Physical Location & Seq
Forward (+)
1 .. 451
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004228.1_g000001.1.cds

Sequence Viewer

Length: 451 bp
gacccctatcgagacagctgaaacatttggcgctagaaggactcccctcgctccttgctggaagaacaacaagccaccaacggctaccagcactctcgataccaatagtgacgattcacctcacgaggcagcgacccgtgaggtccagcgcacgcttgagtttcagagctcgaacaccgagacatgcttggtcatgaccactaacgtgaccactacactggaaataacgatgcgtgacttaatggagacacattcacaggccaaggccgagcgcgcggcagctatggcagctcgccgagaagtggaaaatatgacaaaccagaatagcattctccgggaggcactccagaggagagttgcgaacaattggtggtgtcccgacacccggagcaatcctcaccacagaccccaagcactggcctcactggcacttttgtgccaccaagcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.7

Weight (kDa)

6.48

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 2 cut(s) 274, 276
AciI CCGC 1 cut(s) 276
AfiI CCNNNNNNNGG 3 cut(s) 302, 385, 416
AleI CACNNNNGTG 2 cut(s) 204, 434
AluBI AGCT 4 cut(s) 18, 169, 282, 291
AluI AGCT 4 cut(s) 18, 169, 282, 291
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 3 cut(s) 6, 174, 240
AoxI GGCC 3 cut(s) 259, 265, 418
ApeKI GCWGC 3 cut(s) 129, 279, 288
AspLEI GCGC 4 cut(s) 33, 151, 274, 276
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 336, 386
AsuHPI GGTGA 2 cut(s) 109, 390
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 141, 291, 300
BceAI ACGGC 1 cut(s) 97
BcnI CCSGG 2 cut(s) 336, 386
BcoDI GTCTC 3 cut(s) 6, 174, 240
BfaI CTAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 34
BglI GCCNNNNNGGC 1 cut(s) 426
BisI GCNGC 4 cut(s) 130, 277, 280, 289
BlsI GCNGC 4 cut(s) 131, 278, 281, 290
Bme1390I CCNGG 2 cut(s) 336, 386
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 336, 386
BmsI GCATC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 177
BpuMI CCSGG 2 cut(s) 336, 386
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 385, 416
Bse1I ACTGG 3 cut(s) 223, 421, 430
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 302, 385, 416
BseNI ACTGG 3 cut(s) 223, 421, 430
BsePI GCGCGC 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 3 cut(s) 141, 291, 300
Bsh1236I CGCG 2 cut(s) 274, 276
BshFI GGCC 3 cut(s) 261, 267, 420
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 335, 386
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 3 cut(s) 302, 385, 416
BsmAI GTCTC 3 cut(s) 6, 174, 240
BsmFI GGGAC 1 cut(s) 361
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 3 cut(s) 261, 267, 420
Bsp1286I GDGCHC 1 cut(s) 171
BspACI CCGC 1 cut(s) 276
BspANI GGCC 3 cut(s) 261, 267, 420
BspFNI CGCG 2 cut(s) 274, 276
BspHI TCATGA 1 cut(s) 193
BsrI ACTGG 3 cut(s) 223, 421, 430
BssECI CCNNGG 1 cut(s) 262
BssHII GCGCGC 1 cut(s) 272
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 153, 274, 293
BstFNI CGCG 2 cut(s) 274, 276
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 4 cut(s) 33, 151, 274, 276
BstMAI GTCTC 3 cut(s) 6, 174, 240
BstMWI GCNNNNNNNGC 4 cut(s) 273, 285, 288, 426
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 334, 384
BstUI CGCG 2 cut(s) 274, 276
BstV1I GCAGC 3 cut(s) 141, 291, 300
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuRI GGCC 3 cut(s) 261, 267, 420
BtsIMutI CAGTG 3 cut(s) 216, 414, 423
Cac8I GCNNGC 3 cut(s) 153, 274, 293
CciI TCATGA 1 cut(s) 193
CfoI GCGC 4 cut(s) 33, 151, 274, 276
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 2 cut(s) 184, 194
CviJI RGCY 9 cut(s) 18, 74, 84, 169, 261, 267, 282, 291, 420
CviKI_1 RGCY 9 cut(s) 18, 74, 84, 169, 261, 267, 282, 291, 420
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 187, 197
FaiI YATR 4 cut(s) 185, 195, 285, 312
FaqI GGGAC 1 cut(s) 361
FatI CATG 2 cut(s) 183, 193
Fnu4HI GCNGC 4 cut(s) 130, 277, 280, 289
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 4 cut(s) 130, 277, 280, 289
FspBI CTAG 1 cut(s) 34
GlaI GCGC 4 cut(s) 32, 150, 273, 275
GluI GCNGC 4 cut(s) 130, 277, 280, 289
GsuI CTGGAG 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 3 cut(s) 261, 267, 420
HapII CCGG 2 cut(s) 335, 386
HhaI GCGC 4 cut(s) 33, 151, 274, 276
Hin1II CATG 2 cut(s) 187, 197
Hin6I GCGC 4 cut(s) 31, 149, 272, 274
HinP1I GCGC 4 cut(s) 31, 149, 272, 274
HinfI GANTC 2 cut(s) 41, 114
HpaII CCGG 2 cut(s) 335, 386
HphI GGTGA 2 cut(s) 109, 390
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 6 cut(s) 11, 96, 123, 194, 347, 378
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 285, 288, 426
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 2 cut(s) 187, 197
HspAI GCGC 4 cut(s) 31, 149, 272, 274
LmnI GCTCC 2 cut(s) 56, 388
Lsp1109I GCAGC 3 cut(s) 141, 291, 300
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 34
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 108, 206, 234
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 365
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 8 cut(s) 57, 119, 130, 134, 332, 343, 406, 431
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 204, 434
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 2 cut(s) 335, 386
MspR9I CCNGG 2 cut(s) 336, 386
MunI CAATTG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 328
MvnI CGCG 2 cut(s) 274, 276
MwoI GCNNNNNNNGC 4 cut(s) 273, 285, 288, 426
NciI CCSGG 2 cut(s) 336, 386
NlaIII CATG 2 cut(s) 187, 197
NmeAIII GCCGAG 2 cut(s) 293, 321
NmuCI GTSAC 3 cut(s) 108, 206, 234
NspI RCATGY 1 cut(s) 187
OliI CACNNNNGTG 2 cut(s) 204, 434
PagI TCATGA 1 cut(s) 193
PauI GCGCGC 1 cut(s) 272
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 4 cut(s) 131, 278, 281, 290
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 143
PteI GCGCGC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 18
RseI CAYNNNNRTG 2 cut(s) 204, 434
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 4 cut(s) 130, 277, 280, 289
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 336, 386
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 20, 122, 145, 171, 208, 284, 293
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 204, 434
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 365
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 34
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 334, 384
StyI CCWWGG 1 cut(s) 262
TaiI ACGT 1 cut(s) 208
TaqI TCGA 3 cut(s) 10, 97, 171
TasI AATT 1 cut(s) 365
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 3 cut(s) 223, 421, 430
TseFI GTSAC 3 cut(s) 108, 206, 234
TseI GCWGC 3 cut(s) 129, 279, 288
Tsp45I GTSAC 3 cut(s) 108, 206, 234
TspRI CASTG 3 cut(s) 223, 421, 430
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 143
XceI RCATGY 1 cut(s) 187
XspI CTAG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.