Rmu_sc0000964.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000964.1
OG0000863
Physical Location & Seq
Reverse (-)
27389 .. 28383
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000964.1_g000007.1.cds

Sequence Viewer

Length: 834 bp
atgactaacaacactcccgacacacatgacaatgaccaatcatgcgaggacttggctcgggagtttcaacgtaccctcaacttcctcagccccactggcgagacctccaccatcacgacgacagacattgcaacagcacttgagatcaccaagcgtgacctaatgcagtcgcgtgtacaggtagaggccgagtgcctagctcagaggaggcccgcaaggcccaccagcaaacccatcggcggtgtcaacacaccagggaccttcctaaccacagacccgagtacaggcctcactagcaccttcaatatcacacctctcacagccaagacaacacttgacactctcgcaggccctactccatggaacgctagcacgggcccacagattatctaccttagcttacctctattccctaactctctcggtgcagcaccattgccaccaccaccacctcagcctatacttgatgcgatgagcgaaactattgctgcctcacaagcaagaattgagaacgcagaaaataggtcgggctggcaaccaataacagcagggtttgaagggaagataagactattcacacctcggatacatgctgagaagcatccacaggaggcaaaacctttcaaaatgtgttgcaatatatgggtttgggccttgcggcccaaagggattacaaagtgtgttgcaatgggatgtagagtaagtgggaatgagtctcattttataggagagggagactccttcctttacatgttttccaatgtgggacaagaaacctctattctagtgtataaagcttatcatggaggcatcttagcaaggccgggaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.15

Weight (kDa)

6.95

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 172
AciI CCGC 3 cut(s) 213, 240, 658
AfaI GTAC 3 cut(s) 73, 177, 283
AfiI CCNNNNNNNGG 2 cut(s) 239, 284
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 4 cut(s) 68, 304, 557, 625
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 3 cut(s) 200, 399, 797
AluI AGCT 3 cut(s) 200, 399, 797
Alw26I GTCTC 3 cut(s) 95, 720, 729
Ama87I CYCGRG 2 cut(s) 57, 277
AoxI GGCC 9 cut(s) 186, 209, 218, 286, 349, 376, 651, 659, 821
ApaI GGGCCC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 428, 488
AspS9I GGNCC 8 cut(s) 210, 219, 258, 350, 376, 377, 651, 660
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 1 cut(s) 139
AsuNHI GCTAGC 1 cut(s) 368
AvaI CYCGRG 2 cut(s) 57, 277
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 380
BbvCI CCTCAGC 2 cut(s) 86, 453
BbvI GCAGC 2 cut(s) 440, 475
BccI CCATC 2 cut(s) 119, 242
BcgI CGANNNNNNTGC 4 cut(s) 217, 251, 467, 501
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 579
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 3 cut(s) 95, 720, 729
BfaI CTAG 4 cut(s) 197, 294, 369, 785
BfuI GTATCC 1 cut(s) 579
BglI GCCNNNNNGGC 2 cut(s) 96, 217
BisI GCNGC 3 cut(s) 429, 489, 659
BlsI GCNGC 3 cut(s) 430, 490, 660
Bme1390I CCNGG 2 cut(s) 255, 825
Bme18I GGWCC 1 cut(s) 258
BmeT110I CYCGRG 2 cut(s) 57, 277
BmgT120I GGNCC 8 cut(s) 210, 219, 258, 350, 376, 377, 651, 660
BmiI GGNNCC 2 cut(s) 259, 378
BmrFI CCNGG 2 cut(s) 255, 825
BmsI GCATC 3 cut(s) 457, 610, 819
BmtI GCTAGC 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 722, 754
Bpu10I CCTNAGC 3 cut(s) 86, 395, 453
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 825
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 254, 359, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 284
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 3 cut(s) 126, 434, 693
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 254, 359, 581
BseGI GGATG 2 cut(s) 601, 698
BseLI CCNNNNNNNGG 2 cut(s) 239, 284
BseMI GCAATG 3 cut(s) 126, 434, 693
BseMII CTCAG 4 cut(s) 100, 215, 467, 585
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 2 cut(s) 440, 475
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 9 cut(s) 188, 211, 220, 288, 351, 378, 653, 661, 823
BsiHKCI CYCGRG 2 cut(s) 57, 277
BsiSI CCGG 1 cut(s) 824
BslFI GGGAC 2 cut(s) 271, 780
BslI CCNNNNNNNGG 2 cut(s) 239, 284
BsmAI GTCTC 3 cut(s) 95, 720, 729
BsmFI GGGAC 2 cut(s) 271, 780
BsnI GGCC 9 cut(s) 188, 211, 220, 288, 351, 378, 653, 661, 823
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 2 cut(s) 57, 277
Bsp120I GGGCCC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 3 cut(s) 213, 240, 658
BspANI GGCC 9 cut(s) 188, 211, 220, 288, 351, 378, 653, 661, 823
BspCNI CTCAG 4 cut(s) 99, 214, 466, 586
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 259, 378
BspOI GCTAGC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 3 cut(s) 126, 434, 693
BsrGI TGTACA 1 cut(s) 175
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 3 cut(s) 254, 359, 581
BssMI GATC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 175
BstC8I GCNNGC 4 cut(s) 213, 349, 370, 533
BstDEI CTNAG 6 cut(s) 86, 201, 395, 453, 594, 814
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 2 cut(s) 601, 698
BstFNI CGCG 1 cut(s) 172
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 3 cut(s) 95, 720, 729
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 4 cut(s) 96, 217, 294, 497
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 2 cut(s) 593, 754
BstSCI CCNGG 2 cut(s) 253, 823
BstSLI GKGCMC 1 cut(s) 380
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 440, 475
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 9 cut(s) 188, 211, 220, 288, 351, 378, 653, 661, 823
BtgI CCRYGG 1 cut(s) 359
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 2 cut(s) 601, 698
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 4 cut(s) 213, 349, 370, 533
Cfr13I GGNCC 8 cut(s) 210, 219, 258, 350, 376, 377, 651, 660
Csp6I GTAC 3 cut(s) 72, 176, 282
CviAII CATG 6 cut(s) 26, 42, 360, 590, 751, 803
CviQI GTAC 3 cut(s) 72, 176, 282
DdeI CTNAG 6 cut(s) 86, 201, 395, 453, 594, 814
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 359
Eco147I AGGCCT 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 258
Eco88I CYCGRG 2 cut(s) 57, 277
EcoO109I RGGNCCY 2 cut(s) 258, 350
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 6 cut(s) 29, 45, 363, 593, 754, 806
FaqI GGGAC 2 cut(s) 271, 780
FatI CATG 6 cut(s) 25, 41, 359, 589, 750, 802
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 429, 489, 659
FokI GGATG 2 cut(s) 588, 705
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 429, 489, 659
FspBI CTAG 4 cut(s) 197, 294, 369, 785
GluI GCNGC 3 cut(s) 429, 489, 659
HaeIII GGCC 9 cut(s) 188, 211, 220, 288, 351, 378, 653, 661, 823
HapII CCGG 1 cut(s) 824
Hin1II CATG 6 cut(s) 29, 45, 363, 593, 754, 806
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 2 cut(s) 713, 737
HpaII CCGG 1 cut(s) 824
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 176, 247
Hpy188I TCNGA 2 cut(s) 204, 585
Hpy188III TCNNGA 3 cut(s) 17, 59, 115
Hpy8I GTNNAC 2 cut(s) 176, 247
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 4 cut(s) 271, 310, 551, 751
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 5 cut(s) 131, 166, 428, 636, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 217, 294, 497
HpyF3I CTNAG 6 cut(s) 86, 201, 395, 453, 594, 814
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 6 cut(s) 29, 45, 363, 593, 754, 806
Kzo9I GATC 1 cut(s) 144
Lsp1109I GCAGC 2 cut(s) 440, 475
LweI GCATC 3 cut(s) 457, 610, 819
MaeI CTAG 4 cut(s) 197, 294, 369, 785
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 1 cut(s) 504
MlyI GAGTC 2 cut(s) 722, 731
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 2 cut(s) 255, 825
MvaI CCWGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 4 cut(s) 96, 217, 294, 497
NciI CCSGG 1 cut(s) 825
NcoI CCATGG 1 cut(s) 359
NdeII GATC 1 cut(s) 144
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 6 cut(s) 29, 45, 363, 593, 754, 806
NlaIV GGNNCC 2 cut(s) 259, 378
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 2 cut(s) 593, 754
PceI AGGCCT 1 cut(s) 288
PciI ACATGT 1 cut(s) 750
PkrI GCNGC 3 cut(s) 430, 490, 660
PleI GAGTC 2 cut(s) 721, 731
PpsI GAGTC 2 cut(s) 721, 731
PpuMI RGGWCCY 1 cut(s) 258
PscI ACATGT 1 cut(s) 750
Psp5II RGGWCCY 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 259, 378
PspOMI GGGCCC 1 cut(s) 376
PspPI GGNCC 8 cut(s) 210, 219, 258, 350, 376, 377, 651, 660
PspPPI RGGWCCY 1 cut(s) 258
RsaI GTAC 3 cut(s) 73, 177, 283
RsaNI GTAC 3 cut(s) 72, 176, 282
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 3 cut(s) 429, 489, 659
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 8 cut(s) 210, 219, 258, 350, 376, 377, 651, 660
SchI GAGTC 2 cut(s) 722, 731
ScrFI CCNGG 2 cut(s) 255, 825
SduI GDGCHC 1 cut(s) 380
SfaNI GCATC 3 cut(s) 457, 610, 819
SfiI GGCCNNNNNGGCC 1 cut(s) 217
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 504
SseBI AGGCCT 1 cut(s) 288
SsiI CCGC 3 cut(s) 213, 240, 658
SspMI CTAG 4 cut(s) 197, 294, 369, 785
StuI AGGCCT 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 253, 823
StyI CCWWGG 1 cut(s) 359
TaiI ACGT 1 cut(s) 73
TasI AATT 1 cut(s) 504
TatI WGTACW 2 cut(s) 175, 281
TauI GCSGC 1 cut(s) 661
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 2 cut(s) 428, 488
Tsp45I GTSAC 1 cut(s) 155
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 258
XceI RCATGY 2 cut(s) 593, 754
XspI CTAG 4 cut(s) 197, 294, 369, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.