Rmu_sc0012136.1_g000012

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012136.1
OG0000863
Physical Location & Seq
Forward (+)
17499 .. 18125
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012136.1_g000012.1.cds

Sequence Viewer

Length: 627 bp
ctgctacagataaacaccaatcctcccgctacatatgatgactttctcgatgctgctatcgcctttgcacaggcggaatacgatacctttggccgcgataccaactccaatgcgcatccagtcagggtccctcaagtcaacaaccctattgggaccacaaaaagcagaggcactgattccgccaaggacaagcccatccagcatgacaggtcccaacgagatcgacaaggctacaaggacaaaagggacaaacagtacggaaagagccccaagaagccaaaatacaactcccccagtagtcgatatcgcgatgcaccatacagcggtacccgacacagggatgaccagcgctttgaggcaccccgatatgagatttacaccacactcacctcttcttatgaggatatctggaataaccacaaggacatcatcccatgcccaccacggcgcaaacttggccaggcaaaactgctagataacagtaaatactgcacgtatcatgaggagtccagccaccccaccaatatctattgggcgctaaaaaatgttatcgagcacctcattcagagtggccagctctcgcaatatcgcactcccgccacgggcgctaacgccattaaggtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

208

Amino Acids

23.89

Weight (kDa)

9.36

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 2 cut(s) 326, 358
AccII CGCG 2 cut(s) 96, 309
AciI CCGC 6 cut(s) 27, 74, 94, 180, 324, 597
AcoI YGGCCR 3 cut(s) 91, 457, 571
AfaI GTAC 2 cut(s) 257, 328
AfeI AGCGCT 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 323, 336, 337, 602
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 1 cut(s) 577
AluI AGCT 1 cut(s) 577
Alw21I GWGCWC 1 cut(s) 558
Aor51HI AGCGCT 1 cut(s) 350
AoxI GGCC 3 cut(s) 91, 457, 571
ApeKI GCWGC 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp718I GGTACC 1 cut(s) 326
AspLEI GCGC 5 cut(s) 115, 351, 450, 538, 608
AspS9I GGNCC 3 cut(s) 127, 153, 210
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 3 cut(s) 127, 153, 210
BaeI ACNNNNGTAYC 2 cut(s) 310, 343
BalI TGGCCA 2 cut(s) 459, 573
BanI GGYRCC 2 cut(s) 326, 358
BanII GRGCYC 1 cut(s) 269
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 461
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 5
BfoI RGCGCY 3 cut(s) 352, 539, 609
BisI GCNGC 2 cut(s) 54, 94
BlsI GCNGC 2 cut(s) 55, 95
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 3 cut(s) 127, 153, 210
BmgT120I GGNCC 3 cut(s) 127, 153, 210
BmiI GGNNCC 6 cut(s) 128, 129, 154, 212, 328, 360
BmrFI CCNGG 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 40, 124, 301
BmuI ACTGGG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 183, 443, 600
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 336, 337, 602
Bse1I ACTGG 2 cut(s) 119, 294
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 183, 443, 600
BseGI GGATG 4 cut(s) 115, 195, 346, 429
BseLI CCNNNNNNNGG 4 cut(s) 323, 336, 337, 602
BseNI ACTGG 2 cut(s) 119, 294
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 475
Bsh1236I CGCG 2 cut(s) 96, 309
BshFI GGCC 3 cut(s) 93, 459, 573
BshNI GGYRCC 2 cut(s) 326, 358
BsiHKAI GWGCWC 1 cut(s) 558
BslFI GGGAC 4 cut(s) 113, 166, 196, 260
BslI CCNNNNNNNGG 4 cut(s) 323, 336, 337, 602
BsmFI GGGAC 4 cut(s) 113, 166, 196, 260
BsnI GGCC 3 cut(s) 93, 459, 573
Bsp1286I GDGCHC 2 cut(s) 269, 558
Bsp143I GATC 1 cut(s) 220
Bsp68I TCGCGA 1 cut(s) 309
BspACI CCGC 6 cut(s) 27, 74, 94, 180, 324, 597
BspANI GGCC 3 cut(s) 93, 459, 573
BspFNI CGCG 2 cut(s) 96, 309
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 6 cut(s) 128, 129, 154, 212, 328, 360
BspT107I GGYRCC 2 cut(s) 326, 358
BsrI ACTGG 2 cut(s) 119, 294
BssECI CCNNGG 3 cut(s) 183, 443, 600
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 255, 482
Bst6I CTCTTC 1 cut(s) 397
BstBAI YACGTR 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 575
BstDSI CCRYGG 2 cut(s) 443, 600
BstF5I GGATG 4 cut(s) 115, 195, 346, 429
BstFNI CGCG 2 cut(s) 96, 309
BstH2I RGCGCY 3 cut(s) 352, 539, 609
BstHHI GCGC 5 cut(s) 115, 351, 450, 538, 608
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 4 cut(s) 59, 199, 456, 605
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstSFI CTRYAG 1 cut(s) 5
BstUI CGCG 2 cut(s) 96, 309
BstV1I GCAGC 1 cut(s) 40
BsuRI GGCC 3 cut(s) 93, 459, 573
BtgI CCRYGG 2 cut(s) 443, 600
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 4 cut(s) 115, 195, 346, 429
BtsIMutI CAGTG 1 cut(s) 171
BtuMI TCGCGA 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 575
CciI TCATGA 1 cut(s) 499
CfoI GCGC 5 cut(s) 115, 351, 450, 538, 608
Cfr13I GGNCC 3 cut(s) 127, 153, 210
Csp6I GTAC 2 cut(s) 256, 327
CviAII CATG 3 cut(s) 203, 435, 500
CviJI RGCY 9 cut(s) 93, 193, 231, 267, 277, 459, 513, 573, 577
CviKI_1 RGCY 9 cut(s) 93, 193, 231, 267, 277, 459, 513, 573, 577
CviQI GTAC 2 cut(s) 256, 327
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 3 cut(s) 91, 457, 571
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
EciI GGCGGA 2 cut(s) 89, 169
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 269
Eco32I GATATC 2 cut(s) 305, 406
Eco47I GGWCC 3 cut(s) 127, 153, 210
Eco47III AGCGCT 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 127, 210
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 2 cut(s) 305, 406
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 206, 438, 503
FaiI YATR 8 cut(s) 34, 36, 204, 319, 369, 399, 436, 501
FaqI GGGAC 4 cut(s) 113, 166, 196, 260
FatI CATG 3 cut(s) 202, 434, 499
FauI CCCGC 2 cut(s) 34, 604
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 54, 94
FokI GGATG 4 cut(s) 102, 182, 353, 416
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 54, 94
FspAI RTGCGCAY 1 cut(s) 114
FspBI CTAG 1 cut(s) 473
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 5 cut(s) 114, 350, 449, 537, 607
GluI GCNGC 2 cut(s) 54, 94
HaeII RGCGCY 3 cut(s) 352, 539, 609
HaeIII GGCC 3 cut(s) 93, 459, 573
HhaI GCGC 5 cut(s) 115, 351, 450, 538, 608
Hin1II CATG 3 cut(s) 206, 438, 503
Hin6I GCGC 5 cut(s) 113, 349, 448, 536, 606
HinP1I GCGC 5 cut(s) 113, 349, 448, 536, 606
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 2 cut(s) 176, 506
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 567
Hpy188III TCNNGA 4 cut(s) 47, 308, 409, 500
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 255, 482
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 3 cut(s) 68, 314, 492
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 199, 456, 605
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 3 cut(s) 206, 438, 503
HspAI GCGC 5 cut(s) 113, 349, 448, 536, 606
KflI GGGWCCC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 330
Kzo9I GATC 1 cut(s) 220
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 3 cut(s) 40, 124, 301
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 494
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 384
MhlI GDGCHC 2 cut(s) 269, 558
MlsI TGGCCA 2 cut(s) 459, 573
MluNI TGGCCA 2 cut(s) 459, 573
MlyI GAGTC 1 cut(s) 515
MnlI CCTC 8 cut(s) 33, 141, 161, 349, 394, 400, 496, 569
Mox20I TGGCCA 2 cut(s) 459, 573
MscI TGGCCA 2 cut(s) 459, 573
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 2 cut(s) 459, 573
MspA1I CMGCKG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 2 cut(s) 96, 309
MwoI GCNNNNNNNGC 4 cut(s) 59, 199, 456, 605
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 206, 438, 503
NlaIV GGNNCC 6 cut(s) 128, 129, 154, 212, 328, 360
NruI TCGCGA 1 cut(s) 309
NsbI TGCGCA 1 cut(s) 114
PagI TCATGA 1 cut(s) 499
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 55, 95
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
Ppu21I YACGTR 1 cut(s) 495
PpuMI RGGWCCY 2 cut(s) 127, 210
Psp5II RGGWCCY 2 cut(s) 127, 210
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 6 cut(s) 128, 129, 154, 212, 328, 360
PspPI GGNCC 3 cut(s) 127, 153, 210
PspPPI RGGWCCY 2 cut(s) 127, 210
RruI TCGCGA 1 cut(s) 309
RsaI GTAC 2 cut(s) 257, 328
RsaNI GTAC 2 cut(s) 256, 327
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 2 cut(s) 54, 94
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 3 cut(s) 127, 153, 210
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 269, 558
SetI ASST 7 cut(s) 89, 212, 392, 497, 561, 579, 624
SfaNI GCATC 3 cut(s) 40, 124, 301
SfcI CTRYAG 1 cut(s) 5
SinI GGWCC 3 cut(s) 127, 153, 210
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SsiI CCGC 6 cut(s) 27, 74, 94, 180, 324, 597
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 255, 482
TaiI ACGT 1 cut(s) 497
TaqI TCGA 4 cut(s) 48, 223, 301, 552
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 3 cut(s) 127, 153, 210
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.