Rmu_sc0009206.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009206.1
OG0000863
Physical Location & Seq
Reverse (-)
3623 .. 4081
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009206.1_g000002.1.cds

Sequence Viewer

Length: 459 bp
atggctaccagcgacctcactaccagcagcgacgatcctcatcaagagaccgcgactcacgaggttcagcgaactctcaagttccagagcccggacacctggccgaggtcagttgtaatcgctgacccaaccacagcgctacagatagtaatgcgcgacctcatggagacacgcgcacaggttgaaaaaatgtccaaccagaaccgcaccctacgagaagcactccagcgacgtgtctcgcatgacgacagggcccaccaacaggagaccccgataccaaccattggcggtgttcccacacagggaccgaccctcacagctgatcccgccacctgcctagctggcaccttcgtgcccccaaacctcgtatcgggaaacctcaccagcatggagccacaagtgatctacctgaattccccactccttgcaggtcatcttggcacctccccaactccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.55

Weight (kDa)

5.41

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 2 cut(s) 341, 419
AccB1I GGYRCC 2 cut(s) 344, 440
AccB7I CCANNNNNTGG 1 cut(s) 284
AccII CGCG 3 cut(s) 53, 156, 174
AciI CCGC 4 cut(s) 51, 205, 288, 327
AclWI GGATC 2 cut(s) 29, 317
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 412
AfeI AGCGCT 1 cut(s) 138
AfiI CCNNNNNNNGG 6 cut(s) 91, 105, 262, 284, 302, 370
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 1 cut(s) 185
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 1 cut(s) 98
AleI CACNNNNGTG 1 cut(s) 350
AluBI AGCT 2 cut(s) 320, 341
AluI AGCT 2 cut(s) 320, 341
Alw26I GTCTC 4 cut(s) 41, 161, 241, 260
AlwI GGATC 2 cut(s) 29, 317
Aor51HI AGCGCT 1 cut(s) 138
AoxI GGCC 2 cut(s) 101, 252
ApaI GGGCCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 412
AspLEI GCGC 3 cut(s) 139, 156, 176
AspS9I GGNCC 3 cut(s) 252, 253, 305
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 256, 357
BanI GGYRCC 2 cut(s) 344, 440
BanII GRGCYC 2 cut(s) 92, 256
BauI CACGAG 1 cut(s) 59
BbvI GCAGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 100
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 4 cut(s) 41, 161, 241, 260
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 2 cut(s) 341, 419
BglI GCCNNNNNGGC 1 cut(s) 342
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 92, 100
Bme18I GGWCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 3 cut(s) 252, 253, 305
BmiI GGNNCC 5 cut(s) 254, 306, 346, 393, 442
BmrFI CCNGG 2 cut(s) 92, 100
BplI GAGNNNNNCTC 2 cut(s) 207, 239
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 2 cut(s) 41, 260
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 105, 262, 284, 302, 370
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 6 cut(s) 91, 105, 262, 284, 302, 370
BseSI GKGCMC 2 cut(s) 256, 357
BseXI GCAGC 1 cut(s) 39
Bsh1236I CGCG 3 cut(s) 53, 156, 174
BshFI GGCC 2 cut(s) 103, 254
BshNI GGYRCC 2 cut(s) 344, 440
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 6 cut(s) 91, 105, 262, 284, 302, 370
BsmAI GTCTC 4 cut(s) 41, 161, 241, 260
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 2 cut(s) 103, 254
Bso31I GGTCTC 2 cut(s) 41, 260
Bsp120I GGGCCC 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 92, 256, 357
Bsp143I GATC 3 cut(s) 34, 322, 402
BspACI CCGC 4 cut(s) 51, 205, 288, 327
BspANI GGCC 2 cut(s) 103, 254
BspFNI CGCG 3 cut(s) 53, 156, 174
BspLI GGNNCC 5 cut(s) 254, 306, 346, 393, 442
BspMI ACCTGC 2 cut(s) 341, 419
BspPI GGATC 2 cut(s) 29, 317
BspT107I GGYRCC 2 cut(s) 344, 440
BspTNI GGTCTC 2 cut(s) 41, 260
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 3 cut(s) 34, 322, 402
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 343
BstENI CCTNNNNNAGG 1 cut(s) 103
BstFNI CGCG 3 cut(s) 53, 156, 174
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 3 cut(s) 139, 156, 176
BstKTI GATC 3 cut(s) 37, 325, 405
BstMAI GTCTC 4 cut(s) 41, 161, 241, 260
BstMBI GATC 3 cut(s) 34, 322, 402
BstMWI GCNNNNNNNGC 2 cut(s) 326, 342
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 90, 98
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 2 cut(s) 256, 357
BstUI CGCG 3 cut(s) 53, 156, 174
BstV1I GCAGC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 103, 254
BtrI CACGTC 1 cut(s) 233
BveI ACCTGC 2 cut(s) 341, 419
Cac8I GCNNGC 1 cut(s) 343
CfoI GCGC 3 cut(s) 139, 156, 176
Cfr13I GGNCC 3 cut(s) 252, 253, 305
CviAII CATG 3 cut(s) 163, 242, 388
CviJI RGCY 7 cut(s) 5, 90, 103, 254, 320, 341, 394
CviKI_1 RGCY 7 cut(s) 5, 90, 103, 254, 320, 341, 394
DpnI GATC 3 cut(s) 36, 324, 404
DpnII GATC 3 cut(s) 34, 322, 402
EaeI YGGCCR 1 cut(s) 101
Eco24I GRGCYC 2 cut(s) 92, 256
Eco31I GGTCTC 2 cut(s) 41, 260
Eco47I GGWCC 1 cut(s) 305
Eco47III AGCGCT 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 98
EcoT38I GRGCYC 2 cut(s) 92, 256
FaeI CATG 3 cut(s) 166, 245, 391
FaiI YATR 3 cut(s) 164, 243, 389
FaqI GGGAC 1 cut(s) 318
FatI CATG 3 cut(s) 162, 241, 387
FauI CCCGC 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 28
FriOI GRGCYC 2 cut(s) 92, 256
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 338
GlaI GCGC 3 cut(s) 138, 155, 175
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 103, 254
HapII CCGG 1 cut(s) 92
HhaI GCGC 3 cut(s) 139, 156, 176
Hin1II CATG 3 cut(s) 166, 245, 391
Hin6I GCGC 3 cut(s) 137, 154, 174
HinP1I GCGC 3 cut(s) 137, 154, 174
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 373
Hpy188III TCNNGA 4 cut(s) 44, 59, 85, 372
Hpy99I CGWCG 2 cut(s) 35, 234
HpyAV CCTTC 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 342
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 166, 245, 391
HspAI GCGC 3 cut(s) 137, 154, 174
Kzo9I GATC 3 cut(s) 34, 322, 402
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 232
MalI GATC 3 cut(s) 36, 324, 404
MboI GATC 3 cut(s) 34, 322, 402
MhlI GDGCHC 3 cut(s) 92, 256, 357
MluCI AATT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 9 cut(s) 26, 48, 55, 99, 170, 323, 374, 389, 454
MslI CAYNNNNRTG 2 cut(s) 350, 386
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 92, 100
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 3 cut(s) 53, 156, 174
MwoI GCNNNNNNNGC 2 cut(s) 326, 342
NciI CCSGG 1 cut(s) 92
NdeII GATC 3 cut(s) 34, 322, 402
NlaIII CATG 3 cut(s) 166, 245, 391
NlaIV GGNNCC 5 cut(s) 254, 306, 346, 393, 442
NmeAIII GCCGAG 1 cut(s) 129
OliI CACNNNNGTG 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 5 cut(s) 254, 306, 346, 393, 442
PspOMI GGGCCC 1 cut(s) 252
PspPI GGNCC 3 cut(s) 252, 253, 305
PvuII CAGCTG 1 cut(s) 320
RseI CAYNNNNRTG 2 cut(s) 350, 386
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 34, 322, 402
Sau96I GGNCC 3 cut(s) 252, 253, 305
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 92, 100
SduI GDGCHC 3 cut(s) 92, 256, 357
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 2 cut(s) 350, 386
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 412
SsiI CCGC 4 cut(s) 51, 205, 288, 327
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 90, 98
TaiI ACGT 1 cut(s) 235
TaqII GACCGA 1 cut(s) 322
TasI AATT 1 cut(s) 412
TseI GCWGC 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 103
XapI RAATTY 1 cut(s) 412
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.