Rmu_sc0021291.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021291.1
OG0000863
Physical Location & Seq
Forward (+)
9219 .. 9742
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021291.1_g000004.1.cds

Sequence Viewer

Length: 387 bp
atggctaccaacatccccgataacgacgatccgccccacgaggcaacgaccctcgaggtccagcgcactctcgagttccaaagcctgaacgtcgagactcgctcagtcatgaccaccgatccaaccatcgcgctagagatagcgatgctcgacctcatggagacacgagaccccgataccaactatcggtggtgtcctgacaccaggagcaatcctcaccaccgacccaagcactggcctcaccacaatgcttggtcgaagtatttcatatctcatgaagatgagattgtaagatctgaggaactgaaggagcatgccaaaatatttgaagaattgaaggaggatgccaaaagaatgcaagaattgattgcaaaatttccagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.1

Weight (kDa)

5.17

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 234
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 32
AclWI GGATC 2 cut(s) 23, 113
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 186, 234
AgsI TTSAA 2 cut(s) 329, 337
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw26I GTCTC 3 cut(s) 89, 155, 162
AlwI GGATC 2 cut(s) 23, 113
Ama87I CYCGRG 2 cut(s) 53, 71
AoxI GGCC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 2 cut(s) 66, 133
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 209, 233
AvaI CYCGRG 2 cut(s) 53, 71
AvaII GGWCC 1 cut(s) 58
BauI CACGAG 2 cut(s) 38, 165
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 89, 155, 162
BfaI CTAG 1 cut(s) 134
BglII AGATCT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 2 cut(s) 53, 71
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 2 cut(s) 135, 334
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 199, 231
BsaI GGTCTC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 234
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 205
BseGI GGATG 2 cut(s) 12, 349
BseLI CCNNNNNNNGG 2 cut(s) 186, 234
BseMII CTCAG 2 cut(s) 117, 288
BseNI ACTGG 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 238
BsiHKCI CYCGRG 2 cut(s) 53, 71
BslI CCNNNNNNNGG 2 cut(s) 186, 234
BsmAI GTCTC 3 cut(s) 89, 155, 162
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 162
BsoBI CYCGRG 2 cut(s) 53, 71
Bsp143I GATC 3 cut(s) 28, 118, 293
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 116, 289
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 2 cut(s) 108, 274
BspPI GGATC 2 cut(s) 23, 113
BspTNI GGTCTC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 239
BssMI GATC 3 cut(s) 28, 118, 293
BssSI CACGAG 2 cut(s) 38, 165
Bst2BI CACGAG 2 cut(s) 38, 165
Bst2UI CCWGG 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 103, 297
BstF5I GGATG 2 cut(s) 12, 349
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 2 cut(s) 66, 133
BstKTI GATC 3 cut(s) 31, 121, 296
BstMAI GTCTC 3 cut(s) 89, 155, 162
BstMBI GATC 3 cut(s) 28, 118, 293
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 1 cut(s) 238
BtgZI GCGATG 2 cut(s) 112, 158
BtsCI GGATG 2 cut(s) 12, 349
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 315
CciI TCATGA 2 cut(s) 108, 274
CfoI GCGC 2 cut(s) 66, 133
Cfr13I GGNCC 1 cut(s) 58
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 4 cut(s) 109, 157, 275, 314
CviJI RGCY 4 cut(s) 5, 84, 238, 383
CviKI_1 RGCY 4 cut(s) 5, 84, 238, 383
DdeI CTNAG 2 cut(s) 103, 297
DpnI GATC 3 cut(s) 30, 120, 295
DpnII GATC 3 cut(s) 28, 118, 293
EciI GGCGGA 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 2 cut(s) 53, 71
EcoRII CCWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 112, 160, 278, 317
FaiI YATR 5 cut(s) 110, 158, 269, 276, 315
FatI CATG 4 cut(s) 108, 156, 274, 313
FokI GGATG 1 cut(s) 356
FspBI CTAG 1 cut(s) 134
GlaI GCGC 2 cut(s) 65, 132
HaeIII GGCC 1 cut(s) 238
HhaI GCGC 2 cut(s) 66, 133
Hin1II CATG 4 cut(s) 112, 160, 278, 317
Hin6I GCGC 2 cut(s) 64, 131
HinP1I GCGC 2 cut(s) 64, 131
HinfI GANTC 1 cut(s) 97
HphI GGTGA 2 cut(s) 209, 233
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 5 cut(s) 71, 94, 109, 197, 275
Hpy99I CGWCG 2 cut(s) 29, 95
HpyAV CCTTC 2 cut(s) 301, 331
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 358, 371
HpyF3I CTNAG 2 cut(s) 103, 297
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 112, 160, 278, 317
HspAI GCGC 2 cut(s) 64, 131
Kzo9I GATC 3 cut(s) 28, 118, 293
LmnI GCTCC 2 cut(s) 207, 310
LpnPI CCDG 6 cut(s) 74, 98, 190, 210, 217, 220
LweI GCATC 2 cut(s) 135, 334
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 90
MalI GATC 3 cut(s) 30, 120, 295
MboI GATC 3 cut(s) 28, 118, 293
MboII GAAGA 2 cut(s) 290, 341
MflI RGATCY 1 cut(s) 293
MluCI AATT 3 cut(s) 332, 362, 374
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 8 cut(s) 34, 49, 62, 164, 225, 249, 292, 334
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 385
MslI CAYNNNNRTG 2 cut(s) 246, 279
MspR9I CCNGG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 131
NdeII GATC 3 cut(s) 28, 118, 293
NlaIII CATG 4 cut(s) 112, 160, 278, 317
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PaeR7I CTCGAG 2 cut(s) 53, 71
PagI TCATGA 2 cut(s) 108, 274
PctI GAATGC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 234
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 1 cut(s) 58
PspXI VCTCGAGB 1 cut(s) 53
PsuI RGATCY 1 cut(s) 293
RseI CAYNNNNRTG 2 cut(s) 246, 279
SaqAI TTAA 1 cut(s) 385
Sau3AI GATC 3 cut(s) 28, 118, 293
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 205
SetI ASST 4 cut(s) 60, 93, 156, 385
SfaNI GCATC 2 cut(s) 135, 334
Sfr274I CTCGAG 2 cut(s) 53, 71
SinI GGWCC 1 cut(s) 58
SlaI CTCGAG 2 cut(s) 53, 71
SmiMI CAYNNNNRTG 2 cut(s) 246, 279
SmlI CTYRAG 2 cut(s) 53, 71
SmoI CTYRAG 2 cut(s) 53, 71
SphI GCATGC 1 cut(s) 317
Sse9I AATT 3 cut(s) 332, 362, 374
SsiI CCGC 1 cut(s) 32
SspI AATATT 1 cut(s) 324
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 203
TaiI ACGT 1 cut(s) 93
TaqI TCGA 5 cut(s) 54, 72, 93, 150, 257
TasI AATT 3 cut(s) 332, 362, 374
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TscAI CASTG 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 256, 291
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 374
XceI RCATGY 1 cut(s) 317
XhoI CTCGAG 2 cut(s) 53, 71
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.