Rmu_sc0004688.1_g000018

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004688.1
OG0000863
Physical Location & Seq
Forward (+)
59031 .. 60492
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004688.1_g000018.1.cds

Sequence Viewer

Length: 1182 bp
atgacgaaccagaatcgtatccttcgagaggcactccagcggcgagttactaacaacgaggcattggacagggccagtcaacaggaaaccccgataccgacaatcggcggagtcccaacacttggagtagtcctcaccacagacccaagcactggcctcgccggcacttttatgctacagagggtaacctccggaagccccacgggccccaccctaggctgcacaatcgctggaccacaagtaatctacttgaaccccctactctccaatcaactcggcatagcaccaccacctcagcctgctccagatatagcgggaaccacggacacaaacaccgccgcagtcgccaacatacctcctcccgaccccaatactaggttgttactccaaatgagagaaaccatcacctccttacaagcacaaattaagagcgccgaaagccggatcggctggcaaccatcacggctgtcttccagggaaatatgggaccattcactgcccgaatactgcctgagaagcgcccaccaaaggccaagcccttcaagattgagaaatataatggcacccaagacccataccatcacttggaagttttttactctagcagcatcagtgtttaagcaggcactccaaccgggatactttctactgcaaatcaacaccaatccccctgcgacatatgacgacctcctcgatgtcgctaccgctttcgcgcaggccgagtacgacatatttggtagcaacacaaataccaatacacacctagtcaacgtcccccaagtcaccaaccccaccggaaccacagatagcagaagcaaagactccaccagggacaaacctgtccaacatgacagattccaacgagagcgacaaggctacaatgacaaaagggacaagcaatacgggaaaagcccttctcctgagaagccaaagtacagttcttccggcagtcggtatcgcgacacaccatatggtagtacccgacacaaggccaaagattcgaggcaccccgatacgaggtttacaccaccccttacctcttcatatgaagaaatttggaacacccacaaagacatcatcccatgcccacagcggcgcaaacctggccaggccaaaccgagtgacaatggcaaatattgtacataccatgaggaatttggccaccccaccaatatttgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

393

Amino Acids

43.7

Weight (kDa)

9.35

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 839
AccB1I GGYRCC 2 cut(s) 562, 1005
AccB7I CCANNNNNTGG 3 cut(s) 122, 152, 585
AccII CGCG 2 cut(s) 713, 960
AccIII TCCGGA 1 cut(s) 191
AciI CCGC 7 cut(s) 40, 108, 314, 336, 339, 705, 1093
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 2 cut(s) 1105, 1159
AcsI RAATTY 2 cut(s) 1053, 1154
AfaI GTAC 4 cut(s) 725, 935, 979, 1141
AgsI TTSAA 2 cut(s) 253, 543
AjnI CCWGG 4 cut(s) 473, 827, 1102, 1107
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
AlwI GGATC 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 9 cut(s) 72, 154, 205, 530, 717, 990, 1105, 1110, 1159
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 219, 605
ApoI RAATTY 2 cut(s) 1053, 1154
AspA2I CCTAGG 1 cut(s) 214
AspLEI GCGC 4 cut(s) 434, 521, 715, 1098
AspS9I GGNCC 5 cut(s) 72, 205, 206, 233, 487
AsuC2I CCSGG 1 cut(s) 636
AsuHPI GGTGA 3 cut(s) 127, 397, 775
AvaII GGWCC 2 cut(s) 233, 487
AvrII CCTAGG 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 209
BalI TGGCCA 2 cut(s) 1107, 1161
BanI GGYRCC 2 cut(s) 562, 1005
BanII GRGCYC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 917, 949
BbsI GAAGAC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 206, 617
BccI CCATC 3 cut(s) 410, 466, 587
BceAI ACGGC 1 cut(s) 479
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 4 cut(s) 475, 829, 1104, 1109
BciVI GTATCC 2 cut(s) 29, 632
BcnI CCSGG 1 cut(s) 636
BfaI CTAG 5 cut(s) 215, 375, 602, 764, 1180
BfmI CTRYAG 1 cut(s) 176
BfoI RGCGCY 2 cut(s) 435, 522
BfuI GTATCC 2 cut(s) 29, 632
BglI GCCNNNNNGGC 3 cut(s) 162, 204, 447
BisI GCNGC 5 cut(s) 41, 220, 339, 606, 1094
BlnI CCTAGG 1 cut(s) 214
BlsI GCNGC 5 cut(s) 42, 221, 340, 607, 1095
Bme1390I CCNGG 5 cut(s) 475, 636, 829, 1104, 1109
Bme18I GGWCC 2 cut(s) 233, 487
BmgT120I GGNCC 5 cut(s) 72, 205, 206, 233, 487
BmiI GGNNCC 7 cut(s) 207, 208, 319, 488, 564, 799, 1007
BmrFI CCNGG 5 cut(s) 475, 636, 829, 1104, 1109
BmsI GCATC 1 cut(s) 617
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 117, 149
BpmI CTGGAG 2 cut(s) 20, 288
Bpu10I CCTNAGC 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 636
BsaJI CCNNGG 5 cut(s) 201, 214, 321, 474, 828
BsaWI WCCGGW 2 cut(s) 191, 794
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 75, 157
BseAI TCCGGA 1 cut(s) 191
BseBI CCWGG 4 cut(s) 475, 829, 1104, 1109
BseDI CCNNGG 5 cut(s) 201, 214, 321, 474, 828
BseGI GGATG 1 cut(s) 1077
BseMII CTCAG 3 cut(s) 308, 503, 912
BseNI ACTGG 2 cut(s) 75, 157
BseRI GAGGAG 2 cut(s) 348, 680
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 206, 617
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 2 cut(s) 713, 960
BshFI GGCC 9 cut(s) 74, 156, 207, 532, 719, 992, 1107, 1112, 1161
BshNI GGYRCC 2 cut(s) 562, 1005
BsiSI CCGG 6 cut(s) 162, 192, 442, 635, 795, 945
BslFI GGGAC 5 cut(s) 98, 500, 758, 845, 905
BsmFI GGGAC 5 cut(s) 98, 500, 758, 845, 905
BsnI GGCC 9 cut(s) 74, 156, 207, 532, 719, 992, 1107, 1112, 1161
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 191
Bsp1407I TGTACA 1 cut(s) 1139
Bsp143I GATC 1 cut(s) 444
Bsp68I TCGCGA 1 cut(s) 960
BspACI CCGC 7 cut(s) 40, 108, 314, 336, 339, 705, 1093
BspANI GGCC 9 cut(s) 74, 156, 207, 532, 719, 992, 1107, 1112, 1161
BspCNI CTCAG 3 cut(s) 307, 504, 913
BspEI TCCGGA 1 cut(s) 191
BspFNI CGCG 2 cut(s) 713, 960
BspLI GGNNCC 7 cut(s) 207, 208, 319, 488, 564, 799, 1007
BspPI GGATC 1 cut(s) 452
BspT107I GGYRCC 2 cut(s) 562, 1005
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 1139
BsrI ACTGG 2 cut(s) 75, 157
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 5 cut(s) 201, 214, 321, 474, 828
BssMI GATC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 4 cut(s) 475, 829, 1104, 1109
Bst4CI ACNGT 1 cut(s) 938
Bst6I CTCTTC 1 cut(s) 1045
BstAUI TGTACA 1 cut(s) 1139
BstC8I GCNNGC 5 cut(s) 163, 300, 452, 624, 717
BstDEI CTNAG 3 cut(s) 294, 512, 921
BstDSI CCRYGG 2 cut(s) 201, 321
BstEII GGTNACC 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 1077
BstFNI CGCG 2 cut(s) 713, 960
BstH2I RGCGCY 2 cut(s) 435, 522
BstHHI GCGC 4 cut(s) 434, 521, 715, 1098
BstKTI GATC 1 cut(s) 447
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 7 cut(s) 162, 204, 344, 438, 447, 516, 1104
BstNI CCWGG 4 cut(s) 475, 829, 1104, 1109
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 5 cut(s) 473, 634, 827, 1102, 1107
BstSFI CTRYAG 1 cut(s) 176
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 2 cut(s) 713, 960
BstV1I GCAGC 2 cut(s) 206, 617
BstV2I GAAGAC 1 cut(s) 462
BsuI GTATCC 2 cut(s) 29, 632
BsuRI GGCC 9 cut(s) 74, 156, 207, 532, 719, 992, 1107, 1112, 1161
BtgI CCRYGG 2 cut(s) 201, 321
BtsCI GGATG 1 cut(s) 1077
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 3 cut(s) 150, 494, 618
BtuMI TCGCGA 1 cut(s) 960
Cac8I GCNNGC 5 cut(s) 163, 300, 452, 624, 717
CfoI GCGC 4 cut(s) 434, 521, 715, 1098
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 5 cut(s) 72, 205, 206, 233, 487
Csp6I GTAC 4 cut(s) 724, 934, 978, 1140
CviAII CATG 3 cut(s) 848, 1083, 1148
CviQI GTAC 4 cut(s) 724, 934, 978, 1140
DdeI CTNAG 3 cut(s) 294, 512, 921
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
DrdI GACNNNNNNGTC 1 cut(s) 839
DseDI GACNNNNNNGTC 1 cut(s) 839
EaeI YGGCCR 2 cut(s) 1105, 1159
Eam1104I CTCTTC 1 cut(s) 1045
EarI CTCTTC 1 cut(s) 1045
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 233, 487
Eco91I GGTNACC 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 4 cut(s) 473, 827, 1102, 1107
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 851, 1086, 1151
FaqI GGGAC 5 cut(s) 98, 500, 758, 845, 905
FatI CATG 3 cut(s) 847, 1082, 1147
FauI CCCGC 1 cut(s) 307
FauNDI CATATG 3 cut(s) 679, 970, 1045
Fnu4HI GCNGC 5 cut(s) 41, 220, 339, 606, 1094
FokI GGATG 1 cut(s) 1064
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 5 cut(s) 41, 220, 339, 606, 1094
FspBI CTAG 5 cut(s) 215, 375, 602, 764, 1180
GlaI GCGC 4 cut(s) 433, 520, 714, 1097
GluI GCNGC 5 cut(s) 41, 220, 339, 606, 1094
GsuI CTGGAG 2 cut(s) 20, 288
HaeII RGCGCY 2 cut(s) 435, 522
HaeIII GGCC 9 cut(s) 74, 156, 207, 532, 719, 992, 1107, 1112, 1161
HapII CCGG 6 cut(s) 162, 192, 442, 635, 795, 945
HhaI GCGC 4 cut(s) 434, 521, 715, 1098
Hin1II CATG 3 cut(s) 851, 1086, 1151
Hin6I GCGC 4 cut(s) 432, 519, 713, 1096
HinP1I GCGC 4 cut(s) 432, 519, 713, 1096
HincII GTYRAC 2 cut(s) 80, 769
HindII GTYRAC 2 cut(s) 80, 769
HinfI GANTC 5 cut(s) 13, 111, 821, 855, 998
HpaII CCGG 6 cut(s) 162, 192, 442, 635, 795, 945
HphI GGTGA 3 cut(s) 127, 397, 775
Hpy166II GTNNAC 3 cut(s) 80, 769, 1023
Hpy188III TCNNGA 7 cut(s) 26, 192, 305, 362, 543, 920, 959
Hpy8I GTNNAC 3 cut(s) 80, 769, 1023
HpyAV CCTTC 3 cut(s) 32, 549, 924
HpyCH4III ACNGT 1 cut(s) 938
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 2 cut(s) 222, 652
HpyF10VI GCNNNNNNNGC 7 cut(s) 162, 204, 344, 438, 447, 516, 1104
HpyF3I CTNAG 3 cut(s) 294, 512, 921
HpySE526I ACGT 1 cut(s) 771
Hsp92II CATG 3 cut(s) 851, 1086, 1151
HspAI GCGC 4 cut(s) 432, 519, 713, 1096
Kpn2I TCCGGA 1 cut(s) 191
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 2 cut(s) 206, 617
LweI GCATC 1 cut(s) 617
MaeI CTAG 5 cut(s) 215, 375, 602, 764, 1180
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 5 cut(s) 46, 184, 381, 781, 1121
MalI GATC 1 cut(s) 446
MboI GATC 1 cut(s) 444
MboII GAAGA 4 cut(s) 462, 933, 1032, 1061
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 2 cut(s) 1107, 1161
MluCI AATT 3 cut(s) 423, 1053, 1154
MluNI TGGCCA 2 cut(s) 1107, 1161
MlyI GAGTC 2 cut(s) 120, 815
MmeI TCCRAC 3 cut(s) 655, 868, 883
Mox20I TGGCCA 2 cut(s) 1107, 1161
MroI TCCGGA 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 161
MscI TGGCCA 2 cut(s) 1107, 1161
MseI TTAA 2 cut(s) 426, 618
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 2 cut(s) 1107, 1161
MspA1I CMGCKG 2 cut(s) 40, 1093
MspI CCGG 6 cut(s) 162, 192, 442, 635, 795, 945
MspR9I CCNGG 5 cut(s) 475, 636, 829, 1104, 1109
MvaI CCWGG 4 cut(s) 475, 829, 1104, 1109
MvnI CGCG 2 cut(s) 713, 960
MwoI GCNNNNNNNGC 7 cut(s) 162, 204, 344, 438, 447, 516, 1104
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 636
NdeI CATATG 3 cut(s) 679, 970, 1045
NdeII GATC 1 cut(s) 444
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 3 cut(s) 851, 1086, 1151
NlaIV GGNNCC 7 cut(s) 207, 208, 319, 488, 564, 799, 1007
NmeAIII GCCGAG 2 cut(s) 255, 745
NmuCI GTSAC 2 cut(s) 781, 1121
NruI TCGCGA 1 cut(s) 960
PcsI WCGNNNNNNNCGW 3 cut(s) 22, 690, 717
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 13, 855, 998
PflMI CCANNNNNTGG 3 cut(s) 122, 152, 585
PkrI GCNGC 5 cut(s) 42, 221, 340, 607, 1095
PleI GAGTC 2 cut(s) 119, 815
PpsI GAGTC 2 cut(s) 119, 815
Psp6I CCWGG 4 cut(s) 473, 827, 1102, 1107
PspEI GGTNACC 1 cut(s) 184
PspGI CCWGG 4 cut(s) 473, 827, 1102, 1107
PspN4I GGNNCC 7 cut(s) 207, 208, 319, 488, 564, 799, 1007
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 5 cut(s) 72, 205, 206, 233, 487
RruI TCGCGA 1 cut(s) 960
RsaI GTAC 4 cut(s) 725, 935, 979, 1141
RsaNI GTAC 4 cut(s) 724, 934, 978, 1140
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 426, 618
SatI GCNGC 5 cut(s) 41, 220, 339, 606, 1094
Sau3AI GATC 1 cut(s) 444
Sau96I GGNCC 5 cut(s) 72, 205, 206, 233, 487
SchI GAGTC 2 cut(s) 120, 815
ScrFI CCNGG 5 cut(s) 475, 636, 829, 1104, 1109
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 1 cut(s) 617
SfcI CTRYAG 1 cut(s) 176
SinI GGWCC 2 cut(s) 233, 487
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 3 cut(s) 423, 1053, 1154
SsiI CCGC 7 cut(s) 40, 108, 314, 336, 339, 705, 1093
SspI AATATT 2 cut(s) 1136, 1174
SspMI CTAG 5 cut(s) 215, 375, 602, 764, 1180
StyD4I CCNGG 5 cut(s) 473, 634, 827, 1102, 1107
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 938
TaiI ACGT 1 cut(s) 774
TaqI TCGA 3 cut(s) 25, 693, 1001
TasI AATT 3 cut(s) 423, 1053, 1154
TatI WGTACW 2 cut(s) 933, 1139
TauI GCSGC 3 cut(s) 43, 341, 1096
TfiI GAWTC 3 cut(s) 13, 855, 998
Tru1I TTAA 2 cut(s) 426, 618
Tru9I TTAA 2 cut(s) 426, 618
TscAI CASTG 3 cut(s) 157, 501, 618
TseFI GTSAC 2 cut(s) 781, 1121
TseI GCWGC 2 cut(s) 219, 605
Tsp45I GTSAC 2 cut(s) 781, 1121
TspDTI ATGAA 2 cut(s) 1032, 1062
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 3 cut(s) 157, 501, 618
Van91I CCANNNNNTGG 3 cut(s) 122, 152, 585
VpaK11BI GGWCC 2 cut(s) 233, 487
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 2 cut(s) 1053, 1154
XcmI CCANNNNNNNNNTGG 1 cut(s) 1154
XmaJI CCTAGG 1 cut(s) 214
XspI CTAG 5 cut(s) 215, 375, 602, 764, 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.