Rmu_sc0005389.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005389.1
OG0000863
Physical Location & Seq
Forward (+)
66060 .. 66497
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005389.1_g000016.1.cds

Sequence Viewer

Length: 438 bp
atgccaaccattggtggggtcccgacacttggagcagtcctcactacagacccaagcactggtcttgctggcactttcgtgccaccaagcgtaacctcaggaagccctacgggccccactacaggcaacaccagcacaggaccacaagtgatttacctgaactcccctcttctccctaatcaactcggcacagcgccaccacctcagcctatcccctatatggcaggagcctcgggcgcaaacacagctgcaactgccaccatacccctacccaaccccaatactcggttgttactccaaatgagcgaaactattgcctcattgcaagcgctgattgagagcgccgaaagcaggaccggctggcaatcgatcacggccggcttccagggaaagatgggaccattcactcctaggattcaagccgagaagcgcccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

14.71

Weight (kDa)

8.19

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 11, 59
AcoI YGGCCR 1 cut(s) 375
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 8 cut(s) 11, 15, 29, 59, 122, 220, 285, 351
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 1 cut(s) 384
AleI CACNNNNGTG 1 cut(s) 77
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 2 cut(s) 112, 375
ApaI GGGCCC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 248
AspA2I CCTAGG 1 cut(s) 410
AspLEI GCGC 5 cut(s) 196, 239, 331, 344, 432
AspS9I GGNCC 6 cut(s) 19, 112, 113, 140, 354, 398
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 4 cut(s) 19, 140, 354, 398
AvrII CCTAGG 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 390
BcgI CGANNNNNNTGC 4 cut(s) 213, 247, 296, 330
BciT130I CCWGG 1 cut(s) 386
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 2 cut(s) 45, 120
BfoI RGCGCY 4 cut(s) 197, 332, 345, 433
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 249
BlnI CCTAGG 1 cut(s) 410
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 4 cut(s) 19, 140, 354, 398
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 6 cut(s) 19, 112, 113, 140, 354, 398
BmiI GGNNCC 6 cut(s) 20, 21, 114, 115, 229, 399
BmrFI CCNGG 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 24, 56
Bpu10I CCTNAGC 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 231, 385, 410
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 8 cut(s) 11, 15, 29, 59, 122, 220, 285, 351
Bse118I RCCGGY 2 cut(s) 356, 377
Bse1I ACTGG 1 cut(s) 64
Bse21I CCTNAGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 231, 385, 410
BseLI CCNNNNNNNGG 8 cut(s) 11, 15, 29, 59, 122, 220, 285, 351
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 111, 218
BseNI ACTGG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 116
BseX3I CGGCCG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 114, 377
BshVI ATCGAT 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 2 cut(s) 357, 378
BslFI GGGAC 2 cut(s) 5, 411
BslI CCNNNNNNNGG 8 cut(s) 11, 15, 29, 59, 122, 220, 285, 351
BsmFI GGGAC 2 cut(s) 5, 411
BsnI GGCC 2 cut(s) 114, 377
BsoBI CYCGRG 1 cut(s) 232
Bsp120I GGGCCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 369
BspANI GGCC 2 cut(s) 114, 377
BspCNI CTCAG 2 cut(s) 110, 217
BspDI ATCGAT 1 cut(s) 368
BspLI GGNNCC 6 cut(s) 20, 21, 114, 115, 229, 399
BsrDI GCAATG 1 cut(s) 320
BsrFI RCCGGY 2 cut(s) 356, 377
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 2 cut(s) 356, 377
BssECI CCNNGG 3 cut(s) 231, 385, 410
BssMI GATC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 4 cut(s) 70, 327, 362, 379
BstDEI CTNAG 2 cut(s) 97, 204
BstH2I RGCGCY 4 cut(s) 197, 332, 345, 433
BstHHI GCGC 5 cut(s) 196, 239, 331, 344, 432
BstKTI GATC 1 cut(s) 372
BstMBI GATC 1 cut(s) 369
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 7 cut(s) 111, 132, 236, 245, 254, 348, 357
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 2 cut(s) 45, 120
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 235
BstZI CGGCCG 1 cut(s) 375
Bsu15I ATCGAT 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 97
BsuRI GGCC 2 cut(s) 114, 377
BsuTUI ATCGAT 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 4 cut(s) 70, 327, 362, 379
CfoI GCGC 5 cut(s) 196, 239, 331, 344, 432
Cfr10I RCCGGY 2 cut(s) 356, 377
Cfr13I GGNCC 6 cut(s) 19, 112, 113, 140, 354, 398
ClaI ATCGAT 1 cut(s) 368
CviJI RGCY 9 cut(s) 105, 114, 208, 230, 248, 360, 377, 381, 422
CviKI_1 RGCY 9 cut(s) 105, 114, 208, 230, 248, 360, 377, 381, 422
DdeI CTNAG 2 cut(s) 97, 204
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 375
EagI CGGCCG 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EclXI CGGCCG 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 4 cut(s) 19, 140, 354, 398
Eco47III AGCGCT 1 cut(s) 330
Eco52I CGGCCG 1 cut(s) 375
Eco81I CCTNAGG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 232
EcoO109I RGGNCCY 2 cut(s) 19, 113
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 410
FaiI YATR 4 cut(s) 219, 221, 263, 436
FaqI GGGAC 2 cut(s) 5, 411
Fnu4HI GCNGC 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 411
GlaI GCGC 5 cut(s) 195, 238, 330, 343, 431
GluI GCNGC 1 cut(s) 249
HaeII RGCGCY 4 cut(s) 197, 332, 345, 433
HaeIII GGCC 2 cut(s) 114, 377
HapII CCGG 2 cut(s) 357, 378
HhaI GCGC 5 cut(s) 196, 239, 331, 344, 432
Hin6I GCGC 5 cut(s) 194, 237, 329, 342, 430
HinP1I GCGC 5 cut(s) 194, 237, 329, 342, 430
HinfI GANTC 1 cut(s) 415
HpaII CCGG 2 cut(s) 357, 378
Hpy188III TCNNGA 2 cut(s) 22, 99
HpyCH4V TGCA 2 cut(s) 251, 325
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 132, 236, 245, 254, 348, 357
HpyF3I CTNAG 2 cut(s) 97, 204
HspAI GCGC 5 cut(s) 194, 237, 329, 342, 430
KflI GGGWCCC 1 cut(s) 19
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 32, 227
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 91, 291
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 116
MnlI CCTC 6 cut(s) 50, 106, 177, 213, 241, 328
MroNI GCCGGC 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 357, 378
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 7 cut(s) 111, 132, 236, 245, 254, 348, 357
NaeI GCCGGC 1 cut(s) 379
NdeII GATC 1 cut(s) 369
NgoMIV GCCGGC 1 cut(s) 377
NlaIV GGNNCC 6 cut(s) 20, 21, 114, 115, 229, 399
NmeAIII GCCGAG 1 cut(s) 165
OliI CACNNNNGTG 1 cut(s) 77
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 415
PflMI CCANNNNNTGG 2 cut(s) 11, 59
PkrI GCNGC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 6 cut(s) 20, 21, 114, 115, 229, 399
PspOMI GGGCCC 1 cut(s) 112
PspPI GGNCC 6 cut(s) 19, 112, 113, 140, 354, 398
PspPPI RGGWCCY 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 77
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 6 cut(s) 19, 112, 113, 140, 354, 398
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 116
SetI ASST 4 cut(s) 98, 159, 205, 250
SfcI CTRYAG 2 cut(s) 45, 120
SinI GGWCC 4 cut(s) 19, 140, 354, 398
SmiMI CAYNNNNRTG 1 cut(s) 77
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 410
TaqI TCGA 1 cut(s) 368
TfiI GAWTC 1 cut(s) 415
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 248
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 2 cut(s) 11, 59
VpaK11BI GGWCC 4 cut(s) 19, 140, 354, 398
XmaJI CCTAGG 1 cut(s) 410
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.