Rmu_sc0003147.1_g000020

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003147.1
OG0000863
Physical Location & Seq
Forward (+)
85148 .. 85507
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003147.1_g000020.1.cds

Sequence Viewer

Length: 360 bp
atgacacacaggccccacaccaagcagcaccaataccggaccacaagtcatctacttgaatccccccaactccccagtcaacttggcacaacgccaccacctcagcccgtcccatatatactgggaacctcaggtgcaaacaccgccacagcctccaacgtacctccacccgacctcaatactcggctattgctccaaatgagccaagccattgcctccttacaagcacgggtagagagcgccgaaagtaggaccggctgggaaccgatcacggcaggctttcaggaaaagatgggaccattcactgcccggaatacaggcttagaagcgcccacgggaggccaagcccttcaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

119

Amino Acids

12.74

Weight (kDa)

8.26

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 249, 338
AgsI TTSAA 2 cut(s) 59, 353
AhdI GACNNNNNGTC 1 cut(s) 45
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
AoxI GGCC 2 cut(s) 11, 340
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 2 cut(s) 242, 331
AspS9I GGNCC 4 cut(s) 12, 39, 252, 296
AsuC2I CCSGG 1 cut(s) 310
AvaII GGWCC 3 cut(s) 39, 252, 296
AxyI CCTNAGG 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 288
BcnI CCSGG 1 cut(s) 310
BfoI RGCGCY 2 cut(s) 243, 332
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 3 cut(s) 39, 252, 296
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgT120I GGNCC 4 cut(s) 12, 39, 252, 296
BmiI GGNNCC 4 cut(s) 14, 127, 264, 297
BmrFI CCNGG 1 cut(s) 310
BmrI ACTGGG 2 cut(s) 69, 131
BmuI ACTGGG 2 cut(s) 69, 131
Bpu10I CCTNAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 338
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 75, 126
Bse21I CCTNAGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 249, 338
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 116, 144
BseNI ACTGG 2 cut(s) 75, 126
BseXI GCAGC 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 258
BshFI GGCC 2 cut(s) 13, 342
BsiSI CCGG 3 cut(s) 37, 255, 310
BslFI GGGAC 2 cut(s) 95, 309
BslI CCNNNNNNNGG 2 cut(s) 249, 338
BsmFI GGGAC 2 cut(s) 95, 309
BsnI GGCC 2 cut(s) 13, 342
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 13, 342
BspCNI CTCAG 2 cut(s) 115, 143
BspLI GGNNCC 4 cut(s) 14, 127, 264, 297
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 2 cut(s) 75, 126
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 3 cut(s) 102, 130, 322
BstDSI CCRYGG 1 cut(s) 333
BstH2I RGCGCY 2 cut(s) 243, 332
BstHHI GCGC 2 cut(s) 242, 331
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 2 cut(s) 143, 353
BstSCI CCNGG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 13, 342
BtgI CCRYGG 1 cut(s) 333
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 2 cut(s) 242, 331
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 4 cut(s) 12, 39, 252, 296
Csp6I GTAC 1 cut(s) 161
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 3 cut(s) 102, 130, 322
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DriI GACNNNNNGTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 45
Eco47I GGWCC 3 cut(s) 39, 252, 296
Eco81I CCTNAGG 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 12
FaiI YATR 3 cut(s) 115, 117, 119
FaqI GGGAC 2 cut(s) 95, 309
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
GlaI GCGC 2 cut(s) 241, 330
GluI GCNGC 1 cut(s) 26
GsaI CCCAGC 1 cut(s) 262
HaeII RGCGCY 2 cut(s) 243, 332
HaeIII GGCC 2 cut(s) 13, 342
HapII CCGG 3 cut(s) 37, 255, 310
HhaI GCGC 2 cut(s) 242, 331
Hin6I GCGC 2 cut(s) 240, 329
HinP1I GCGC 2 cut(s) 240, 329
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 1 cut(s) 59
HpaII CCGG 3 cut(s) 37, 255, 310
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 353
HpyF3I CTNAG 3 cut(s) 102, 130, 322
HpySE526I ACGT 1 cut(s) 159
HspAI GCGC 2 cut(s) 240, 329
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 1 cut(s) 37
MaeII ACGT 1 cut(s) 159
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 111, 139, 163, 174, 185, 226, 332
MspI CCGG 3 cut(s) 37, 255, 310
MspR9I CCNGG 1 cut(s) 310
MwoI GCNNNNNNNGC 2 cut(s) 143, 353
NciI CCSGG 1 cut(s) 310
NdeII GATC 1 cut(s) 267
NlaIV GGNNCC 4 cut(s) 14, 127, 264, 297
NmeAIII GCCGAG 1 cut(s) 163
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 258
PspN4I GGNNCC 4 cut(s) 14, 127, 264, 297
PspPI GGNCC 4 cut(s) 12, 39, 252, 296
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 4 cut(s) 12, 39, 252, 296
ScrFI CCNGG 1 cut(s) 310
SetI ASST 7 cut(s) 103, 131, 136, 162, 166, 177, 358
SinI GGWCC 3 cut(s) 39, 252, 296
SsiI CCGC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 308
TaiI ACGT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 25
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 3 cut(s) 39, 252, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.