Rmu_sc0002279.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002279.1
OG0000863
Physical Location & Seq
Forward (+)
111872 .. 112132
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002279.1_g000021.1.cds

Sequence Viewer

Length: 261 bp
atgtgcgacctcatggagacacgcgcacaggttaagaccgagagcgcagcggccatggctgccagccgggaggttgaaaacatgtccaaccagaatcgcaccctacgagaagcattccagcggcgagtcactcatgacgacgtcttggacagggcccatcagcaggagaccccgataccgaccattggaggtgtccccacatcgggaccggccctcaccgcggacccctcaatcggcctcgctggcacattcagtccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.25

Weight (kDa)

5.19

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccII CGCG 2 cut(s) 24, 221
AciI CCGC 4 cut(s) 50, 121, 219, 221
AcoI YGGCCR 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 6 cut(s) 163, 185, 202, 203, 220, 233
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 1 cut(s) 77
Alw26I GTCTC 2 cut(s) 11, 161
AoxI GGCC 4 cut(s) 51, 153, 210, 235
ApaI GGGCCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 47, 59
AspLEI GCGC 2 cut(s) 26, 47
AspS9I GGNCC 5 cut(s) 153, 154, 206, 211, 223
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 2 cut(s) 206, 223
BaeGI GKGCMC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 46, 59
BccI CCATC 1 cut(s) 165
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 11, 161
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 4 cut(s) 48, 51, 60, 122
BlsI GCNGC 4 cut(s) 49, 52, 61, 123
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 2 cut(s) 206, 223
BmgT120I GGNCC 5 cut(s) 153, 154, 206, 211, 223
BmiI GGNNCC 3 cut(s) 155, 207, 225
BmrFI CCNGG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 54, 219
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 185, 202, 203, 220, 233
Bse118I RCCGGY 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 54, 219
BseLI CCNNNNNNNGG 6 cut(s) 163, 185, 202, 203, 220, 233
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 2 cut(s) 46, 59
Bsh1236I CGCG 2 cut(s) 24, 221
BshFI GGCC 4 cut(s) 53, 155, 212, 237
BsiSI CCGG 2 cut(s) 67, 209
BslFI GGGAC 3 cut(s) 179, 219, 240
BslI CCNNNNNNNGG 6 cut(s) 163, 185, 202, 203, 220, 233
BsmAI GTCTC 2 cut(s) 11, 161
BsmFI GGGAC 3 cut(s) 179, 219, 240
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 4 cut(s) 53, 155, 212, 237
Bso31I GGTCTC 1 cut(s) 161
Bsp120I GGGCCC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 50, 121, 219, 221
BspANI GGCC 4 cut(s) 53, 155, 212, 237
BspFNI CGCG 2 cut(s) 24, 221
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 3 cut(s) 155, 207, 225
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 54, 219
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 64, 244
BstDSI CCRYGG 2 cut(s) 54, 219
BstFNI CGCG 2 cut(s) 24, 221
BstHHI GCGC 2 cut(s) 26, 47
BstMAI GTCTC 2 cut(s) 11, 161
BstMWI GCNNNNNNNGC 4 cut(s) 56, 59, 218, 243
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 157
BstUI CGCG 2 cut(s) 24, 221
BstV1I GCAGC 2 cut(s) 46, 59
BsuRI GGCC 4 cut(s) 53, 155, 212, 237
BtgI CCRYGG 2 cut(s) 54, 219
Cac8I GCNNGC 2 cut(s) 64, 244
CciI TCATGA 1 cut(s) 133
CfoI GCGC 2 cut(s) 26, 47
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 5 cut(s) 153, 154, 206, 211, 223
Cfr42I CCGCGG 1 cut(s) 222
CviAII CATG 4 cut(s) 13, 55, 82, 134
CviJI RGCY 6 cut(s) 53, 59, 66, 155, 212, 237
CviKI_1 RGCY 6 cut(s) 53, 59, 66, 155, 212, 237
EaeI YGGCCR 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 206, 223
EcoO109I RGGNCCY 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 4 cut(s) 16, 58, 85, 137
FaiI YATR 4 cut(s) 14, 56, 83, 135
FaqI GGGAC 3 cut(s) 179, 219, 240
FatI CATG 4 cut(s) 12, 54, 81, 133
Fnu4HI GCNGC 4 cut(s) 48, 51, 60, 122
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 4 cut(s) 48, 51, 60, 122
GlaI GCGC 2 cut(s) 25, 46
GluI GCNGC 4 cut(s) 48, 51, 60, 122
HaeIII GGCC 4 cut(s) 53, 155, 212, 237
HapII CCGG 2 cut(s) 67, 209
HhaI GCGC 2 cut(s) 26, 47
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 4 cut(s) 16, 58, 85, 137
Hin6I GCGC 2 cut(s) 24, 45
HinP1I GCGC 2 cut(s) 24, 45
HinfI GANTC 2 cut(s) 94, 126
HpaII CCGG 2 cut(s) 67, 209
HphI GGTGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 134, 204
Hpy99I CGWCG 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 59, 218, 243
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 4 cut(s) 16, 58, 85, 137
HspAI GCGC 2 cut(s) 24, 45
KspI CCGCGG 1 cut(s) 222
LpnPI CCDG 9 cut(s) 14, 76, 80, 104, 131, 136, 149, 222, 228
Lsp1109I GCAGC 2 cut(s) 46, 59
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 157
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 6 cut(s) 20, 64, 182, 224, 238, 248
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 3 cut(s) 50, 121, 221
MspI CCGG 2 cut(s) 67, 209
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 113
MvnI CGCG 2 cut(s) 24, 221
MwoI GCNNNNNNNGC 4 cut(s) 56, 59, 218, 243
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 54
NlaIII CATG 4 cut(s) 16, 58, 85, 137
NlaIV GGNNCC 3 cut(s) 155, 207, 225
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 85
PagI TCATGA 1 cut(s) 133
PciI ACATGT 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 4 cut(s) 49, 52, 61, 123
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PscI ACATGT 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 155, 207, 225
PspOMI GGGCCC 1 cut(s) 153
PspPI GGNCC 5 cut(s) 153, 154, 206, 211, 223
PsyI GACNNNGTC 1 cut(s) 140
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 4 cut(s) 48, 51, 60, 122
Sau96I GGNCC 5 cut(s) 153, 154, 206, 211, 223
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 157
SetI ASST 5 cut(s) 12, 33, 75, 144, 193
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 2 cut(s) 206, 223
SsiI CCGC 4 cut(s) 50, 121, 219, 221
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 144
TaqII GACCGA 1 cut(s) 53
TauI GCSGC 2 cut(s) 53, 124
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 47, 59
Tsp45I GTSAC 1 cut(s) 127
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 206, 223
XceI RCATGY 1 cut(s) 85
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.