Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002229.1

Orthogroup ID

OG0000863

Physical Location & Seq

Genomic Coordinates Forward (+)

24966 .. 25870

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002229.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ctgcagatcaacaccaatccccccacaacatatgacgacctcctcgatgccgctactgccttcactcaggctgagtacgatacctatggcaacgataccaacaccaatgcacacccggtcaccatacctcaagtgaacaaccccgataccaagaataaagacaccaatcgagacaaactagcccagccagacataaccccacaagagcgacaaggctacagtgataggagggacaagcaatacggcaacagccttgagaaaccaaagtacaattcatcagacatttggaacaaccataaggacatcatcccgcacccaccaaaccgcaagcccagtcagtccaaaccacgagacaatggtaaatattgcaagtaccacgaagagcccgaccaccccaccaatatctgctgggcactgaagaatgctatcgaacacctcattcaaagcagccagctctcgcagtatcgcacccctggtataggagccaatgtcattaaagtctatgggcagatcctcacaatacacggcggtgccccacttgcacccgaaactcgtcacgctcagaagctccaatgccctagggaccaggaagtgctgggacttcatcacgattgtcgcaccccacaagtggagtgggactcggtcacctttagtcgtcacgaggacaccataaagaagcaccataacgacccattccttatcaccatggttattgaccactatcgatgccaccgagtcttggtcgatagtggcgcagcggtcactgtcatgttcggcagctgctacgaaggcctcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

266

Amino Acids

30.27

Weight (kDa)

6.43

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29436 FvH4_4g08647
prunus_persica	Prupe.1G244600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora	Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii	Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa	Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AciI	CCGC	5 cut(s)	51, 311, 325, 528, 758
AclWI	GGATC	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	3 cut(s)	77, 269, 374
AfiI	CCNNNNNNNGG	3 cut(s)	479, 628, 739
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	472, 585
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AleI	CACNNNNGTG	1 cut(s)	528
AluBI	AGCT	3 cut(s)	454, 568, 780
AluI	AGCT	3 cut(s)	454, 568, 780
Alw26I	GTCTC	2 cut(s)	165, 345
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	4 cut(s)	447, 755, 777, 780
AspA2I	CCTAGG	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	755
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	112, 637, 694
AvaII	GGWCC	1 cut(s)	583
AvrII	CCTAGG	1 cut(s)	578
BaeGI	GKGCMC	2 cut(s)	415, 535
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	387
BauI	CACGAG	2 cut(s)	348, 659
BbvI	GCAGC	4 cut(s)	459, 767, 767, 789
BceAI	ACGGC	2 cut(s)	259, 541
BciT130I	CCWGG	2 cut(s)	474, 587
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	165, 345
BfaI	CTAG	2 cut(s)	179, 579
BfmI	CTRYAG	2 cut(s)	2, 217
BisI	GCNGC	5 cut(s)	51, 448, 756, 778, 781
BlnI	CCTAGG	1 cut(s)	578
BlsI	GCNGC	5 cut(s)	52, 449, 757, 779, 782
Bme1390I	CCNGG	3 cut(s)	116, 474, 587
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	3 cut(s)	484, 532, 584
BmrFI	CCNGG	3 cut(s)	116, 474, 587
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	37, 716
BmuI	ACTGGG	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpuEI	CTTGAG	2 cut(s)	114, 275
BpuMI	CCSGG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	724
BsaJI	CCNNGG	3 cut(s)	472, 578, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	479, 628, 739
Bse1I	ACTGG	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	474, 587
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	3 cut(s)	472, 578, 705
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	479, 628, 739
BseMII	CTCAG	3 cut(s)	63, 80, 575
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	2 cut(s)	415, 535
BseXI	GCAGC	4 cut(s)	459, 767, 767, 789
BseYI	CCCAGC	3 cut(s)	183, 408, 595
BshFI	GGCC	1 cut(s)	792
BshNI	GGYRCC	1 cut(s)	530
BshVI	ATCGAT	1 cut(s)	724
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	4 cut(s)	245, 596, 612, 650
BslI	CCNNNNNNNGG	3 cut(s)	479, 628, 739
BsmAI	GTCTC	2 cut(s)	165, 345
BsmFI	GGGAC	4 cut(s)	245, 596, 612, 650
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	792
Bsp1286I	GDGCHC	3 cut(s)	387, 415, 535
Bsp143I	GATC	2 cut(s)	6, 510
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	5 cut(s)	51, 311, 325, 528, 758
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	3 cut(s)	64, 79, 574
BspDI	ATCGAT	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	484, 532, 584
BspMAI	CTGCAG	1 cut(s)	6
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	472, 578, 705
BssMI	GATC	2 cut(s)	6, 510
BssSI	CACGAG	2 cut(s)	348, 659
BssT1I	CCWWGG	2 cut(s)	578, 705
Bst2BI	CACGAG	2 cut(s)	348, 659
Bst2UI	CCWGG	2 cut(s)	474, 587
Bst4CI	ACNGT	2 cut(s)	221, 766
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	329, 452
BstDEI	CTNAG	3 cut(s)	66, 72, 561
BstDSI	CCRYGG	1 cut(s)	705
BstEII	GGTNACC	2 cut(s)	118, 643
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	2 cut(s)	9, 513
BstMAI	GTCTC	2 cut(s)	165, 345
BstMBI	GATC	2 cut(s)	6, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 539, 789
BstNI	CCWGG	2 cut(s)	474, 587
BstPI	GGTNACC	2 cut(s)	118, 643
BstSCI	CCNGG	3 cut(s)	114, 472, 585
BstSFI	CTRYAG	2 cut(s)	2, 217
BstSLI	GKGCMC	2 cut(s)	415, 535
BstV1I	GCAGC	4 cut(s)	459, 767, 767, 789
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
Bsu15I	ATCGAT	1 cut(s)	724
BsuRI	GGCC	1 cut(s)	792
BsuTUI	ATCGAT	1 cut(s)	724
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	226, 413, 762
Cac8I	GCNNGC	2 cut(s)	329, 452
CfoI	GCGC	1 cut(s)	755
Cfr13I	GGNCC	1 cut(s)	583
ClaI	ATCGAT	1 cut(s)	724
Csp6I	GTAC	3 cut(s)	76, 268, 373
CspCI	CAANNNNNGTGG	2 cut(s)	614, 649
CviAII	CATG	2 cut(s)	706, 769
CviQI	GTAC	3 cut(s)	76, 268, 373
DdeI	CTNAG	3 cut(s)	66, 72, 561
DpnI	GATC	2 cut(s)	8, 512
DpnII	GATC	2 cut(s)	6, 510
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	578, 705
Eco147I	AGGCCT	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	437
Eco91I	GGTNACC	2 cut(s)	118, 643
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO65I	GGTNACC	2 cut(s)	118, 643
EcoRII	CCWGG	2 cut(s)	472, 585
EcoT14I	CCWWGG	2 cut(s)	578, 705
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	578, 705
FaeI	CATG	2 cut(s)	709, 772
FaqI	GGGAC	4 cut(s)	245, 596, 612, 650
FatI	CATG	2 cut(s)	705, 768
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	5 cut(s)	51, 448, 756, 778, 781
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	5 cut(s)	51, 448, 756, 778, 781
FspBI	CTAG	2 cut(s)	179, 579
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	5 cut(s)	51, 448, 756, 778, 781
GsaI	CCCAGC	3 cut(s)	187, 412, 599
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	1 cut(s)	755
Hin1II	CATG	2 cut(s)	709, 772
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HinfI	GANTC	2 cut(s)	638, 735
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	112, 637, 694
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	280, 564
Hpy188III	TCNNGA	3 cut(s)	170, 608, 659
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	70, 782
HpyCH4III	ACNGT	2 cut(s)	221, 766
HpyCH4V	TGCA	4 cut(s)	4, 110, 369, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 539, 789
HpyF3I	CTNAG	3 cut(s)	66, 72, 561
Hsp92II	CATG	2 cut(s)	709, 772
HspAI	GCGC	1 cut(s)	753
Kzo9I	GATC	2 cut(s)	6, 510
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	482, 573
Lsp1109I	GCAGC	4 cut(s)	459, 767, 767, 789
LweI	GCATC	2 cut(s)	37, 716
MaeI	CTAG	2 cut(s)	179, 579
MaeIII	GTNAC	5 cut(s)	118, 554, 643, 656, 760
MalI	GATC	2 cut(s)	8, 512
MboI	GATC	2 cut(s)	6, 510
MboII	GAAGA	2 cut(s)	392, 430
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	3 cut(s)	387, 415, 535
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	2 cut(s)	632, 744
MnlI	CCTC	7 cut(s)	50, 53, 138, 222, 446, 524, 655
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	2 cut(s)	528, 767
MspA1I	CMGCKG	2 cut(s)	758, 780
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	3 cut(s)	116, 474, 587
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	474, 587
MwoI	GCNNNNNNNGC	3 cut(s)	56, 539, 789
NciI	CCSGG	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	6, 510
NlaIII	CATG	2 cut(s)	709, 772
NlaIV	GGNNCC	3 cut(s)	484, 532, 584
NmuCI	GTSAC	5 cut(s)	118, 554, 643, 656, 760
OliI	CACNNNNGTG	1 cut(s)	528
PceI	AGGCCT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 384, 730
PctI	GAATGC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	641
PkrI	GCNGC	5 cut(s)	52, 449, 757, 779, 782
PleI	GAGTC	2 cut(s)	632, 743
PpsI	GAGTC	2 cut(s)	632, 743
Psp6I	CCWGG	2 cut(s)	472, 585
PspEI	GGTNACC	2 cut(s)	118, 643
PspFI	CCCAGC	3 cut(s)	183, 408, 595
PspGI	CCWGG	2 cut(s)	472, 585
PspN4I	GGNNCC	3 cut(s)	484, 532, 584
PspPI	GGNCC	1 cut(s)	583
PstI	CTGCAG	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	510
PsyI	GACNNNGTC	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	780
RsaI	GTAC	3 cut(s)	77, 269, 374
RsaNI	GTAC	3 cut(s)	76, 268, 373
RseI	CAYNNNNRTG	2 cut(s)	528, 767
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	5 cut(s)	51, 448, 756, 778, 781
Sau3AI	GATC	2 cut(s)	6, 510
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	2 cut(s)	632, 744
ScrFI	CCNGG	3 cut(s)	116, 474, 587
SduI	GDGCHC	3 cut(s)	387, 415, 535
SetI	ASST	8 cut(s)	42, 86, 130, 438, 456, 570, 650, 782
SfaNI	GCATC	2 cut(s)	37, 716
SfcI	CTRYAG	2 cut(s)	2, 217
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	528, 767
SmlI	CTYRAG	2 cut(s)	129, 254
SmoI	CTYRAG	2 cut(s)	129, 254
Sse9I	AATT	1 cut(s)	271
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	5 cut(s)	51, 311, 325, 528, 758
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	2 cut(s)	179, 579
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	3 cut(s)	114, 472, 585
StyI	CCWWGG	2 cut(s)	578, 705
TaaI	ACNGT	2 cut(s)	221, 766
TaqI	TCGA	5 cut(s)	45, 169, 429, 724, 744
TaqII	GACCGA	1 cut(s)	631
TasI	AATT	1 cut(s)	271
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	3 cut(s)	226, 420, 769
TseFI	GTSAC	5 cut(s)	118, 554, 643, 656, 760
TseI	GCWGC	4 cut(s)	447, 755, 777, 780
Tsp45I	GTSAC	5 cut(s)	118, 554, 643, 656, 760
TspDTI	ATGAA	2 cut(s)	264, 593
TspRI	CASTG	3 cut(s)	226, 420, 769
Tth111I	GACNNNGTC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	583
XagI	CCTNNNNNAGG	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	630
XmaJI	CCTAGG	1 cut(s)	578
XspI	CTAG	2 cut(s)	179, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.