Rmu_sc0002308.1_g000074

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002308.1
OG0000863
Physical Location & Seq
Reverse (-)
324015 .. 330675
6661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002308.1_g000074.1.cds

Sequence Viewer

Length: 1068 bp
atgtgttgggttcgtgggattaagtgtgcaagacgacagcgactccgccgccttcgtcacctccttctccaacaactcctcatcaccgccttcgtcacctccttcgccacctccttgtccaacaacatttcagatgagggactgagggagattgagagttggcttccgaggaggtggattttgggttcaggcttcggagtgtgggtagctcgaagagtcgaagagagagtcggggtcgaggtaggctggagttttttaaagagaatgctggcaattgtgtcgggccgacctgaccagacatttccggcgtcgtccaacattttccgacggctccttcattgcagacctgcgcacctggtcgtccccgtcgtccctaccgaattagttttcacagattcaagccagaagccggagatcaaagagctccgttttcgcgacaacgacccggttggattttctgattccggccaaatcatggcaactcaccggtgtcaaaagcttcctctcgtcctcgccgaccaatccacagtgttggtttgtccagatgataaggaacaaataccggaaacacaaggctcatctagctacctaaaggtaatgaaggaactcccagccaaagatcccaatacccctcagggcgggagcacgagcacagggccacaaatagtgtacctaaacctacccctcttccccaaccagctaggtacaacaccaccacctcaacttgtgctcgatatggtaggcacatcgggcaccaacacaactatggccgcggccactgtccccccacctggccccaatacacgactactaatccagatgaatgagattatcgctgccctacaggcactaattgagaacgtagagagcagatctggctggcagccaagcgggattccaaggaaaaataggaccattcacacctcaaatacaagccgagaaacacccacaggaagcaaaacctttcaaaatcgagaaatacaattgcacacgggacccataccatcacctacttctactataccatcactaggggtaccctcaccatcagaggccaccaagaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.2

Weight (kDa)

9.77

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 355
Acc65I GGTACC 1 cut(s) 1036
AccB1I GGYRCC 2 cut(s) 752, 1036
AccB7I CCANNNNNTGG 1 cut(s) 475
AccII CGCG 2 cut(s) 435, 773
AciI CCGC 7 cut(s) 46, 49, 87, 639, 771, 773, 891
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 3 cut(s) 466, 768, 774
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 3 cut(s) 671, 706, 1038
AfiI CCNNNNNNNGG 5 cut(s) 409, 475, 638, 791, 1031
AgeI ACCGGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 399, 968
AjnI CCWGG 2 cut(s) 354, 790
AloI GAACNNNNNNTCC 2 cut(s) 169, 201
AluBI AGCT 5 cut(s) 209, 424, 499, 585, 700
AluI AGCT 5 cut(s) 209, 424, 499, 585, 700
Alw21I GWGCWC 4 cut(s) 426, 647, 653, 732
AlwI GGATC 1 cut(s) 614
AoxI GGCC 7 cut(s) 283, 466, 656, 768, 774, 793, 1053
ApeKI GCWGC 2 cut(s) 836, 883
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AsiGI ACCGGT 1 cut(s) 486
Asp718I GGTACC 1 cut(s) 1036
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 5 cut(s) 283, 656, 794, 912, 995
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 6 cut(s) 50, 76, 88, 476, 999, 1035
AvaII GGWCC 2 cut(s) 912, 995
AxyI CCTNAGG 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 755
BanI GGYRCC 2 cut(s) 752, 1036
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 1 cut(s) 646
Bbv12I GWGCWC 4 cut(s) 426, 647, 653, 732
BbvI GCAGC 2 cut(s) 823, 895
BccI CCATC 3 cut(s) 1012, 1033, 1054
BceAI ACGGC 1 cut(s) 344
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 2 cut(s) 356, 792
BcnI CCSGG 1 cut(s) 446
BfaI CTAG 3 cut(s) 582, 701, 1031
BfmI CTRYAG 1 cut(s) 842
BfuAI ACCTGC 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 845
BglII AGATCT 1 cut(s) 872
BisI GCNGC 5 cut(s) 49, 771, 774, 837, 884
BlsI GCNGC 5 cut(s) 50, 772, 775, 838, 885
Bme1390I CCNGG 3 cut(s) 356, 446, 792
Bme18I GGWCC 2 cut(s) 912, 995
BmgT120I GGNCC 5 cut(s) 283, 656, 794, 912, 995
BmiI GGNNCC 6 cut(s) 332, 754, 796, 996, 997, 1038
BmrFI CCNGG 3 cut(s) 356, 446, 792
BpmI CTGGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 167, 771, 899
BsaWI WCCGGW 2 cut(s) 486, 562
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 189, 219
Bsc4I CCNNNNNNNGG 5 cut(s) 409, 475, 638, 791, 1031
Bse118I RCCGGY 1 cut(s) 486
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 2 cut(s) 356, 792
BseDI CCNNGG 3 cut(s) 167, 771, 899
BseLI CCNNNNNNNGG 5 cut(s) 409, 475, 638, 791, 1031
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 134, 647
BseRI GAGGAG 2 cut(s) 68, 184
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 2 cut(s) 823, 895
BseYI CCCAGC 1 cut(s) 610
Bsh1236I CGCG 2 cut(s) 435, 773
BshFI GGCC 7 cut(s) 285, 468, 658, 770, 776, 795, 1055
BshNI GGYRCC 2 cut(s) 752, 1036
BshTI ACCGGT 1 cut(s) 486
BsiHKAI GWGCWC 4 cut(s) 426, 647, 653, 732
BsiSI CCGG 6 cut(s) 305, 410, 446, 465, 487, 563
BslFI GGGAC 5 cut(s) 153, 347, 356, 767, 1008
BslI CCNNNNNNNGG 5 cut(s) 409, 475, 638, 791, 1031
BsmFI GGGAC 5 cut(s) 153, 347, 356, 767, 1008
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 7 cut(s) 285, 468, 658, 770, 776, 795, 1055
Bsp1286I GDGCHC 5 cut(s) 426, 647, 653, 732, 755
Bsp143I GATC 3 cut(s) 414, 619, 872
Bsp68I TCGCGA 1 cut(s) 435
BspACI CCGC 7 cut(s) 46, 49, 87, 639, 771, 773, 891
BspANI GGCC 7 cut(s) 285, 468, 658, 770, 776, 795, 1055
BspCNI CTCAG 2 cut(s) 135, 646
BspFNI CGCG 2 cut(s) 435, 773
BspLI GGNNCC 6 cut(s) 332, 754, 796, 996, 997, 1038
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 614
BspT107I GGYRCC 2 cut(s) 752, 1036
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 3 cut(s) 167, 771, 899
BssMI GATC 3 cut(s) 414, 619, 872
BssNI GRCGYC 1 cut(s) 308
BssSI CACGAG 1 cut(s) 646
BssT1I CCWWGG 1 cut(s) 899
Bst2BI CACGAG 1 cut(s) 646
Bst2UI CCWGG 2 cut(s) 356, 792
Bst4CI ACNGT 2 cut(s) 529, 781
Bst6I CTCTTC 3 cut(s) 208, 216, 692
BstACI GRCGYC 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 270, 881
BstDEI CTNAG 2 cut(s) 143, 633
BstDSI CCRYGG 1 cut(s) 771
BstFNI CGCG 2 cut(s) 435, 773
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 417, 622, 875
BstMBI GATC 3 cut(s) 414, 619, 872
BstMWI GCNNNNNNNGC 4 cut(s) 582, 750, 845, 876
BstNI CCWGG 2 cut(s) 356, 792
BstSCI CCNGG 3 cut(s) 354, 444, 790
BstSFI CTRYAG 1 cut(s) 842
BstSLI GKGCMC 1 cut(s) 755
BstUI CGCG 2 cut(s) 435, 773
BstV1I GCAGC 2 cut(s) 823, 895
BstX2I RGATCY 2 cut(s) 619, 872
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 2 cut(s) 619, 872
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 7 cut(s) 285, 468, 658, 770, 776, 795, 1055
BtgI CCRYGG 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 534, 777
BtuMI TCGCGA 1 cut(s) 435
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 270, 881
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 5 cut(s) 283, 656, 794, 912, 995
Cfr42I CCGCGG 1 cut(s) 774
CseI GACGC 1 cut(s) 297
CsiI ACCWGGT 1 cut(s) 354
Csp6I GTAC 3 cut(s) 670, 705, 1037
CspAI ACCGGT 1 cut(s) 486
CviAII CATG 1 cut(s) 475
CviQI GTAC 3 cut(s) 670, 705, 1037
DdeI CTNAG 2 cut(s) 143, 633
DpnI GATC 3 cut(s) 416, 621, 874
DpnII GATC 3 cut(s) 414, 619, 872
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 3 cut(s) 466, 768, 774
Eam1104I CTCTTC 3 cut(s) 208, 216, 692
EarI CTCTTC 3 cut(s) 208, 216, 692
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 899
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 912, 995
Eco53kI GAGCTC 1 cut(s) 424
Eco81I CCTNAGG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 2 cut(s) 354, 790
EcoT14I CCWWGG 1 cut(s) 899
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 899
FaeI CATG 1 cut(s) 478
FaiI YATR 5 cut(s) 476, 737, 767, 1001, 1022
FaqI GGGAC 5 cut(s) 153, 347, 356, 767, 1008
FatI CATG 1 cut(s) 474
FauI CCCGC 2 cut(s) 632, 884
Fnu4HI GCNGC 5 cut(s) 49, 771, 774, 837, 884
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 5 cut(s) 49, 771, 774, 837, 884
FspBI CTAG 3 cut(s) 582, 701, 1031
FspI TGCGCA 1 cut(s) 351
GlaI GCGC 1 cut(s) 351
GluI GCNGC 5 cut(s) 49, 771, 774, 837, 884
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 7 cut(s) 285, 468, 658, 770, 776, 795, 1055
HapII CCGG 6 cut(s) 305, 410, 446, 465, 487, 563
HgaI GACGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 1 cut(s) 478
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 6 cut(s) 42, 216, 228, 395, 461, 895
HpaII CCGG 6 cut(s) 305, 410, 446, 465, 487, 563
HphI GGTGA 6 cut(s) 50, 76, 88, 476, 999, 1035
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 6 cut(s) 133, 168, 197, 326, 460, 1051
Hpy188III TCNNGA 4 cut(s) 434, 542, 817, 974
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 3 cut(s) 313, 330, 371
HpyAV CCTTC 6 cut(s) 62, 74, 100, 112, 344, 595
HpyCH4III ACNGT 2 cut(s) 529, 781
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 3 cut(s) 29, 342, 988
HpyF10VI GCNNNNNNNGC 4 cut(s) 582, 750, 845, 876
HpyF3I CTNAG 2 cut(s) 143, 633
HpySE526I ACGT 1 cut(s) 861
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 1 cut(s) 478
HspAI GCGC 1 cut(s) 350
KflI GGGWCCC 1 cut(s) 995
KpnI GGTACC 1 cut(s) 1040
KspI CCGCGG 1 cut(s) 774
Kzo9I GATC 3 cut(s) 414, 619, 872
LmnI GCTCC 3 cut(s) 336, 429, 642
Lsp1109I GCAGC 2 cut(s) 823, 895
MabI ACCWGGT 1 cut(s) 354
MaeI CTAG 3 cut(s) 582, 701, 1031
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 2 cut(s) 56, 94
MalI GATC 3 cut(s) 416, 621, 874
MboI GATC 3 cut(s) 414, 619, 872
MboII GAAGA 3 cut(s) 225, 233, 679
MfeI CAATTG 2 cut(s) 273, 983
MflI RGATCY 2 cut(s) 619, 872
MhlI GDGCHC 5 cut(s) 426, 647, 653, 732, 755
MluCI AATT 4 cut(s) 273, 380, 852, 983
MlyI GAGTC 3 cut(s) 36, 225, 237
MmeI TCCRAC 5 cut(s) 94, 144, 339, 349, 430
MseI TTAA 2 cut(s) 21, 257
MslI CAYNNNNRTG 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 6 cut(s) 305, 410, 446, 465, 487, 563
MspR9I CCNGG 3 cut(s) 356, 446, 792
MunI CAATTG 2 cut(s) 273, 983
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 2 cut(s) 356, 792
MvnI CGCG 2 cut(s) 435, 773
MwoI GCNNNNNNNGC 4 cut(s) 582, 750, 845, 876
NciI CCSGG 1 cut(s) 446
NdeII GATC 3 cut(s) 414, 619, 872
NlaIII CATG 1 cut(s) 478
NlaIV GGNNCC 6 cut(s) 332, 754, 796, 996, 997, 1038
NmeAIII GCCGAG 1 cut(s) 962
NmuCI GTSAC 2 cut(s) 56, 94
NruI TCGCGA 1 cut(s) 435
NsbI TGCGCA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 3 cut(s) 366, 375, 513
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 395, 461, 895
PflMI CCANNNNNTGG 1 cut(s) 475
PinAI ACCGGT 1 cut(s) 486
PkrI GCNGC 5 cut(s) 50, 772, 775, 838, 885
PleI GAGTC 3 cut(s) 36, 224, 236
PpsI GAGTC 3 cut(s) 36, 224, 236
PpuMI RGGWCCY 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 2 cut(s) 354, 790
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 2 cut(s) 354, 790
PspN4I GGNNCC 6 cut(s) 332, 754, 796, 996, 997, 1038
PspPI GGNCC 5 cut(s) 283, 656, 794, 912, 995
PspPPI RGGWCCY 1 cut(s) 995
PsuI RGATCY 2 cut(s) 619, 872
RruI TCGCGA 1 cut(s) 435
RsaI GTAC 3 cut(s) 671, 706, 1038
RsaNI GTAC 3 cut(s) 670, 705, 1037
RseI CAYNNNNRTG 1 cut(s) 764
SacI GAGCTC 1 cut(s) 426
SacII CCGCGG 1 cut(s) 774
SaqAI TTAA 2 cut(s) 21, 257
SatI GCNGC 5 cut(s) 49, 771, 774, 837, 884
Sau3AI GATC 3 cut(s) 414, 619, 872
Sau96I GGNCC 5 cut(s) 283, 656, 794, 912, 995
SchI GAGTC 3 cut(s) 36, 225, 237
ScrFI CCNGG 3 cut(s) 356, 446, 792
SduI GDGCHC 5 cut(s) 426, 647, 653, 732, 755
SexAI ACCWGGT 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 842
Sfr303I CCGCGG 1 cut(s) 774
SgrAI CRCCGGYG 1 cut(s) 486
SgrBI CCGCGG 1 cut(s) 774
SinI GGWCC 2 cut(s) 912, 995
SmiMI CAYNNNNRTG 1 cut(s) 764
Sse9I AATT 4 cut(s) 273, 380, 852, 983
SsiI CCGC 7 cut(s) 46, 49, 87, 639, 771, 773, 891
SspMI CTAG 3 cut(s) 582, 701, 1031
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 354, 444, 790
StyI CCWWGG 1 cut(s) 899
TaaI ACNGT 2 cut(s) 529, 781
TaiI ACGT 1 cut(s) 864
TaqI TCGA 5 cut(s) 211, 219, 237, 732, 973
TasI AATT 4 cut(s) 273, 380, 852, 983
TauI GCSGC 3 cut(s) 51, 773, 776
TfiI GAWTC 3 cut(s) 395, 461, 895
Tru1I TTAA 2 cut(s) 21, 257
Tru9I TTAA 2 cut(s) 21, 257
TscAI CASTG 2 cut(s) 534, 784
TseFI GTSAC 2 cut(s) 56, 94
TseI GCWGC 2 cut(s) 836, 883
Tsp45I GTSAC 2 cut(s) 56, 94
TspDTI ATGAA 3 cut(s) 326, 614, 836
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 534, 784
Van91I CCANNNNNTGG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 912, 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XspI CTAG 3 cut(s) 582, 701, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.