Rmu_co8331341.1_g000001

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8331341.1
OG0000863
Physical Location & Seq
Forward (+)
1 .. 514
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8331341.1_g000001.1.cds

Sequence Viewer

Length: 514 bp
acaccttggacagggcccactcgcaggagacctcgacacagactattggcggtgttcacacactgggaccaatccttactgcggaccctccaccagcctcgctagcaccttcatgccccctaaccctacgtcgggaggtcctactgcccccactcatggcaacaccagcatagaccctcagacgatctacttgaactccccctcttttcaaggccaacttggcgccgtatcgactccccaacccattgctggcgcggcgggaacctcggatgccaacactgctaccactgccaacatatctccacccgatcccaatactcagctattgctccaaatgagcgaggccatcacctccttacaggcacgagtggaaagcgctgaaagcagagccgactggcagccgaacacggctggtttccagggaaatacaagacccttcaacgccaagatacaggccgagaagcacccaccagaggccaagcccctcaacatcgaaaagtataattggacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

170

Amino Acids

17.92

Weight (kDa)

5.15

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 222
AccII CGCG 1 cut(s) 255
AciI CCGC 4 cut(s) 50, 82, 255, 258
AclWI GGATC 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 223
AfeI AGCGCT 1 cut(s) 377
AfiI CCNNNNNNNGG 8 cut(s) 11, 24, 81, 131, 132, 156, 249, 473
AgsI TTSAA 3 cut(s) 194, 210, 440
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 303
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 5 cut(s) 14, 212, 343, 454, 475
ApaI GGGCCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 398
AspLEI GCGC 3 cut(s) 225, 255, 378
AspS9I GGNCC 6 cut(s) 14, 15, 67, 84, 138, 508
AsuHPI GGTGA 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 102
AvaII GGWCC 4 cut(s) 67, 84, 138, 508
BaeGI GKGCMC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 364
BbvI GCAGC 1 cut(s) 410
BccI CCATC 1 cut(s) 354
BceAI ACGGC 2 cut(s) 210, 424
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 103
BfoI RGCGCY 2 cut(s) 226, 379
BglI GCCNNNNNGGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 256, 399
BlsI GCNGC 2 cut(s) 257, 400
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 4 cut(s) 67, 84, 138, 508
BmgT120I GGNCC 6 cut(s) 14, 15, 67, 84, 138, 508
BmiI GGNNCC 5 cut(s) 16, 68, 86, 224, 263
BmrFI CCNGG 1 cut(s) 420
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 260
BmtI GCTAGC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 3 cut(s) 5, 265, 419
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 8 cut(s) 11, 24, 81, 131, 132, 156, 249, 473
Bse1I ACTGG 2 cut(s) 68, 399
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 5, 265, 419
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 8 cut(s) 11, 24, 81, 131, 132, 156, 249, 473
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 192, 333
BseNI ACTGG 2 cut(s) 68, 399
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 5 cut(s) 16, 214, 345, 456, 477
BshNI GGYRCC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 8 cut(s) 11, 24, 81, 131, 132, 156, 249, 473
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 5 cut(s) 16, 214, 345, 456, 477
Bso31I GGTCTC 1 cut(s) 22
Bsp120I GGGCCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 184, 308
BspACI CCGC 4 cut(s) 50, 82, 255, 258
BspANI GGCC 5 cut(s) 16, 214, 345, 456, 477
BspCNI CTCAG 2 cut(s) 191, 332
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 5 cut(s) 16, 68, 86, 224, 263
BspOI GCTAGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 2 cut(s) 68, 399
BssECI CCNNGG 3 cut(s) 5, 265, 419
BssMI GATC 2 cut(s) 184, 308
BssNI GRCGYC 1 cut(s) 223
BssSI CACGAG 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 104, 251
BstDEI CTNAG 2 cut(s) 178, 319
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 275
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 2 cut(s) 226, 379
BstHHI GCGC 3 cut(s) 225, 255, 378
BstKTI GATC 2 cut(s) 187, 311
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 184, 308
BstMWI GCNNNNNNNGC 7 cut(s) 103, 166, 220, 255, 279, 288, 382
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 410
BsuRI GGCC 5 cut(s) 16, 214, 345, 456, 477
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 2 cut(s) 277, 286
BtsIMutI CAGTG 3 cut(s) 61, 277, 286
Cac8I GCNNGC 2 cut(s) 104, 251
CfoI GCGC 3 cut(s) 225, 255, 378
Cfr13I GGNCC 6 cut(s) 14, 15, 67, 84, 138, 508
CviAII CATG 2 cut(s) 113, 156
DdeI CTNAG 2 cut(s) 178, 319
DinI GGCGCC 1 cut(s) 224
DpnI GATC 2 cut(s) 186, 310
DpnII GATC 2 cut(s) 184, 308
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 4 cut(s) 67, 84, 138, 508
Eco47III AGCGCT 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 2 cut(s) 14, 138
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 224
EheI GGCGCC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 116, 159
FaiI YATR 5 cut(s) 114, 157, 171, 297, 502
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 112, 155
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 2 cut(s) 256, 399
FokI GGATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 256, 399
FspBI CTAG 1 cut(s) 103
GlaI GCGC 3 cut(s) 224, 254, 377
GluI GCNGC 2 cut(s) 256, 399
HaeII RGCGCY 2 cut(s) 226, 379
HaeIII GGCC 5 cut(s) 16, 214, 345, 456, 477
HhaI GCGC 3 cut(s) 225, 255, 378
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 2 cut(s) 116, 159
Hin6I GCGC 3 cut(s) 223, 253, 376
HinP1I GCGC 3 cut(s) 223, 253, 376
HinfI GANTC 1 cut(s) 233
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 181, 269
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 119, 446
HpyCH4IV ACGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 7 cut(s) 103, 166, 220, 255, 279, 288, 382
HpyF3I CTNAG 2 cut(s) 178, 319
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 116, 159
HspAI GCGC 3 cut(s) 223, 253, 376
KasI GGCGCC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 184, 308
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 260
MaeI CTAG 1 cut(s) 103
MaeII ACGT 1 cut(s) 129
MalI GATC 2 cut(s) 186, 310
MboI GATC 2 cut(s) 184, 308
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 503
Mly113I GGCGCC 1 cut(s) 223
MlyI GAGTC 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 7 cut(s) 103, 166, 220, 255, 279, 288, 382
NarI GGCGCC 1 cut(s) 223
NdeII GATC 2 cut(s) 184, 308
NheI GCTAGC 1 cut(s) 102
NlaIII CATG 2 cut(s) 116, 159
NlaIV GGNNCC 5 cut(s) 16, 68, 86, 224, 263
NmeAIII GCCGAG 1 cut(s) 482
PkrI GCNGC 2 cut(s) 257, 400
PleI GAGTC 1 cut(s) 227
PluTI GGCGCC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 5 cut(s) 16, 68, 86, 224, 263
PspOMI GGGCCC 1 cut(s) 14
PspPI GGNCC 6 cut(s) 14, 15, 67, 84, 138, 508
PspPPI RGGWCCY 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 2 cut(s) 256, 399
Sau3AI GATC 2 cut(s) 184, 308
Sau96I GGNCC 6 cut(s) 14, 15, 67, 84, 138, 508
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 18
SetI ASST 9 cut(s) 7, 34, 111, 132, 140, 267, 325, 354, 513
SfaNI GCATC 1 cut(s) 260
SfoI GGCGCC 1 cut(s) 224
SinI GGWCC 4 cut(s) 67, 84, 138, 508
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 503
SsiI CCGC 4 cut(s) 50, 82, 255, 258
SspDI GGCGCC 1 cut(s) 222
SspMI CTAG 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 132
TaqI TCGA 3 cut(s) 34, 231, 493
TasI AATT 1 cut(s) 503
TauI GCSGC 1 cut(s) 258
TscAI CASTG 3 cut(s) 68, 284, 293
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 3 cut(s) 68, 284, 293
VpaK11BI GGWCC 4 cut(s) 67, 84, 138, 508
XagI CCTNNNNNAGG 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XspI CTAG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.